Wall clock time and date at job start Tue Mar 31 2020 21:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37358 * 125.83296 * 2 1 4 4 N 1.29404 * 108.83252 * 180.02562 * 3 2 1 5 5 N 1.40177 * 108.13718 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.34683 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47161 * 270.02473 * 6 5 4 8 8 O 1.21287 * 120.00105 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00294 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62697 * 359.72282 * 9 7 6 11 11 C 1.53631 * 108.54311 * 126.36889 * 10 9 7 12 12 C 1.53036 * 109.23951 * 54.85275 * 11 10 9 13 13 C 1.53006 * 109.45641 * 178.48957 * 12 11 10 14 14 C 1.52999 * 109.47319 * 295.07161 * 13 12 11 15 15 N 1.46496 * 109.47148 * 179.97438 * 14 13 12 16 16 C 1.36941 * 120.00061 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99383 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00121 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47145 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47020 * 119.99864 * 20 18 16 23 23 H 1.48501 * 109.46779 * 239.99556 * 20 18 16 24 24 C 1.53038 * 109.54072 * 298.50881 * 12 11 10 25 25 C 1.46928 * 120.63275 * 179.97438 * 9 7 6 26 26 C 1.34819 * 125.83634 * 180.02562 * 2 1 3 27 27 O 1.21815 * 126.29642 * 359.94775 * 26 2 1 28 28 H 1.09005 * 109.47424 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47305 * 119.97424 * 1 2 3 30 30 H 1.08998 * 109.47653 * 239.97059 * 1 2 3 31 31 H 1.08000 * 125.58808 * 0.04623 * 3 2 1 32 32 H 1.09002 * 109.47394 * 30.02222 * 6 5 4 33 33 H 1.09004 * 109.46823 * 150.02630 * 6 5 4 34 34 H 1.09003 * 109.58246 * 246.19992 * 10 9 7 35 35 H 1.09000 * 109.59024 * 6.62369 * 10 9 7 36 36 H 1.08997 * 109.63034 * 294.85972 * 11 10 9 37 37 H 1.09000 * 109.45516 * 174.73931 * 11 10 9 38 38 H 1.08996 * 109.45229 * 58.53108 * 12 11 10 39 39 H 1.09005 * 109.46971 * 55.06858 * 13 12 11 40 40 H 1.08993 * 109.47107 * 175.06534 * 13 12 11 41 41 H 1.09005 * 109.46852 * 299.99770 * 14 13 12 42 42 H 1.08997 * 109.47060 * 59.99743 * 14 13 12 43 43 H 0.96998 * 120.00372 * 359.97438 * 15 14 13 44 44 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.49846 * 301.41634 * 24 12 11 46 46 H 1.09000 * 109.52498 * 181.33721 * 24 12 11 47 47 H 1.09003 * 109.58362 * 353.37346 * 25 9 7 48 48 H 1.08991 * 109.58578 * 113.65579 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2690 1.1136 0.0000 4 7 3.5065 0.7353 -0.0005 5 7 3.5343 -0.6662 -0.0015 6 6 4.7313 -1.5109 -0.0029 7 6 5.1411 -1.7991 -1.4242 8 8 4.4965 -1.3441 -2.3453 9 7 6.2233 -2.5632 -1.6718 10 6 7.0171 -3.1174 -0.5665 11 6 7.1350 -4.6365 -0.7633 12 6 7.7082 -4.9219 -2.1532 13 6 7.8630 -6.4326 -2.3403 14 6 8.9046 -6.9646 -1.3539 15 7 9.0523 -8.4111 -1.5327 16 6 9.9358 -9.1105 -0.7545 17 1 10.5240 -8.5955 -0.0092 18 6 10.0762 -10.4810 -0.9242 19 7 9.3597 -11.1084 -1.8327 20 14 11.2819 -11.4349 0.1369 21 1 11.9601 -10.5042 1.0745 22 1 10.5496 -12.4702 0.9096 23 1 12.2948 -12.0885 -0.7303 24 6 6.7606 -4.3704 -3.2209 25 6 6.6350 -2.8534 -3.0520 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0001 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5134 -0.8902 30 1 -0.3634 -0.5143 0.8897 31 1 1.9249 2.1373 0.0007 32 1 5.5416 -0.9938 0.5111 33 1 4.5152 -2.4481 0.5101 34 1 8.0100 -2.6677 -0.5685 35 1 6.5206 -2.9077 0.3810 36 1 6.1500 -5.0947 -0.6748 37 1 7.7984 -5.0505 -0.0040 38 1 8.6823 -4.4425 -2.2496 39 1 6.9061 -6.9213 -2.1569 40 1 8.1880 -6.6410 -3.3596 41 1 9.8615 -6.4759 -1.5373 42 1 8.5795 -6.7561 -0.3347 43 1 8.5244 -8.8735 -2.2022 44 1 9.4576 -12.0662 -1.9511 45 1 5.7791 -4.8312 -3.1093 46 1 7.1574 -4.5947 -4.2111 47 1 5.8863 -2.4695 -3.7450 48 1 7.5961 -2.3806 -3.2537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568089033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:37 Heat of formation + Delta-G solvation = -4.373383 kcal Electronic energy + Delta-G solvation = -28991.166352 eV Core-core repulsion = 24889.504246 eV Total energy + Delta-G solvation = -4101.662106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.43688 -41.30085 -39.07828 -38.45166 -36.91598 -36.25827 -35.10704 -33.36089 -32.76904 -32.01709 -30.13504 -29.26939 -27.80162 -26.45931 -24.74393 -24.33373 -23.71226 -22.73955 -22.22325 -21.40842 -20.18768 -19.14507 -18.77698 -18.50795 -17.55432 -17.19044 -17.03308 -16.71570 -16.52337 -16.31354 -15.82602 -15.56606 -15.46560 -15.33370 -15.02461 -14.88827 -14.54167 -14.35744 -14.13801 -13.99352 -13.58028 -13.50233 -13.30981 -13.22808 -13.04459 -12.94904 -12.87384 -12.51001 -12.30915 -12.22114 -12.06094 -11.98100 -11.64763 -11.61678 -11.43714 -11.35075 -11.20924 -10.89557 -10.74307 -9.73925 -9.67616 -8.98961 -7.95581 -5.24623 0.63620 1.07029 1.40374 1.47036 1.48377 1.52183 1.58555 1.93847 2.27169 2.56033 3.31713 3.38416 3.42392 3.67886 3.76425 3.85790 4.03728 4.07395 4.08321 4.09806 4.19479 4.32865 4.36919 4.40928 4.46680 4.49323 4.57136 4.61715 4.75958 4.77595 4.80097 4.87246 4.89781 4.94608 4.96814 5.04791 5.08186 5.21314 5.29641 5.38434 5.49615 5.52546 5.57394 5.67175 6.25074 6.27354 6.58605 6.87978 6.98653 7.32501 8.10676 8.32031 9.28610 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.001874 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.847935 B =14941.239748 C =15387.856933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.279 3.721 4 N -0.310 5.310 5 N -0.446 5.446 6 C 0.141 3.859 7 C 0.495 3.505 8 O -0.581 6.581 9 N -0.603 5.603 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.072 4.072 13 C -0.110 4.110 14 C 0.151 3.849 15 N -0.752 5.752 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.294 1.294 23 H -0.293 1.293 24 C -0.122 4.122 25 C 0.116 3.884 26 C 0.629 3.371 27 O -0.602 6.602 28 H 0.145 0.855 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.291 0.709 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.029 0.971 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.047 0.953 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.556 33.025 5.693 36.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.019 4.019 4 N -0.131 5.131 5 N -0.265 5.265 6 C 0.016 3.984 7 C 0.283 3.717 8 O -0.461 6.461 9 N -0.336 5.336 10 C -0.017 4.017 11 C -0.171 4.171 12 C -0.091 4.091 13 C -0.148 4.148 14 C 0.026 3.974 15 N -0.394 5.394 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.160 4.160 25 C -0.006 4.006 26 C 0.327 3.673 27 O -0.479 6.479 28 H 0.163 0.837 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.306 0.694 32 H 0.178 0.822 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.010 32.722 5.368 35.997 hybrid contribution -0.451 -1.849 -0.248 1.920 sum -14.461 30.873 5.119 34.474 Atomic orbital electron populations 1.22162 0.71813 1.07310 1.03407 1.46130 1.10214 1.05975 1.66311 1.27184 0.84440 0.96095 0.94146 1.76982 1.20399 0.90054 1.25667 1.48403 1.05323 1.04271 1.68509 1.21493 0.86566 0.96230 0.94121 1.21362 0.80012 0.78117 0.92221 1.90679 1.54389 1.53473 1.47520 1.48237 1.27362 1.49393 1.08651 1.22200 0.97378 0.93088 0.89000 1.22113 1.01619 0.95801 0.97574 1.21003 0.99531 0.93692 0.94922 1.21639 0.98198 0.95963 0.98967 1.20900 0.96277 0.83135 0.97137 1.42699 1.48619 1.04213 1.43917 1.19731 1.14439 0.90750 1.12580 0.90289 1.25650 1.02629 0.97872 1.01245 1.69842 1.45720 1.08571 1.38281 0.85025 0.78070 0.78448 0.77936 1.18667 1.22130 1.22054 1.21893 0.99501 0.94604 1.00042 1.21596 1.01103 0.95531 0.82417 1.17114 0.82960 0.85526 0.81657 1.91045 1.78597 1.17526 1.60710 0.83701 0.91690 0.90536 0.69352 0.82205 0.85046 0.88040 0.87388 0.92815 0.89293 0.89332 0.93455 0.92608 0.95992 0.95330 0.79797 0.94075 0.93399 0.89744 0.91134 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.08 127.77 1.42 2.03 16 2 N -0.56 -8.40 3.14 -683.69 -2.15 -10.55 16 3 C 0.28 2.58 12.61 179.82 2.27 4.85 16 4 N -0.31 -5.46 12.53 -59.42 -0.74 -6.21 16 5 N -0.45 -10.19 3.11 -481.79 -1.50 -11.69 16 6 C 0.14 2.64 5.21 85.63 0.45 3.08 16 7 C 0.50 12.26 7.77 87.66 0.68 12.94 16 8 O -0.58 -19.71 15.84 -3.05 -0.05 -19.76 16 9 N -0.60 -12.18 2.97 -818.12 -2.43 -14.61 16 10 C 0.10 1.48 6.37 86.51 0.55 2.03 16 11 C -0.13 -2.66 5.16 30.82 0.16 -2.50 16 12 C -0.07 -1.64 2.15 -10.77 -0.02 -1.67 16 13 C -0.11 -3.46 4.80 30.60 0.15 -3.31 16 14 C 0.15 5.89 6.02 86.38 0.52 6.41 16 15 N -0.75 -39.13 5.60 -343.45 -1.92 -41.05 16 16 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 19 N -0.97 -61.02 13.06 21.65 0.28 -60.73 16 20 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 C -0.12 -2.70 5.36 30.66 0.16 -2.54 16 25 C 0.12 2.41 6.43 86.35 0.55 2.97 16 26 C 0.63 16.42 8.60 178.99 1.54 17.96 16 27 O -0.60 -20.88 17.76 -4.72 -0.08 -20.96 16 28 H 0.14 -0.58 8.07 -2.38 -0.02 -0.60 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.29 -1.46 8.06 -2.91 -0.02 -1.48 16 32 H 0.16 1.72 7.93 -2.39 -0.02 1.71 16 33 H 0.13 2.25 7.67 -2.39 -0.02 2.23 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 0.99 5.93 -2.39 -0.01 0.97 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.78 6.50 -2.39 -0.02 1.76 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.03 1.08 6.53 -2.39 -0.02 1.06 16 43 H 0.37 20.75 7.67 -92.71 -0.71 20.04 16 44 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 1.77 7.01 -2.39 -0.02 1.75 16 48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -93.03 393.01 3.43 -89.60 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.26 Total: 22.36 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 9.73 Total: 24.96 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -8.46 Total: -144.84 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.13 Total: -40.72 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -93.03 3.43 -89.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568089033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.230 kcal (2) G-P(sol) polarization free energy of solvation -93.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds