Wall clock time and date at job start Tue Mar 31 2020 21:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00253 * 2 1 4 4 C 1.52998 * 109.46989 * 269.99629 * 3 2 1 5 5 C 1.53009 * 109.47017 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46853 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99617 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99904 * 180.02562 * 7 6 5 10 10 N 1.31615 * 119.99999 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00065 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47186 * 89.99946 * 11 9 7 13 13 H 1.48493 * 109.47149 * 210.00293 * 11 9 7 14 14 H 1.48503 * 109.46808 * 329.99797 * 11 9 7 15 15 C 1.34779 * 119.99576 * 179.97438 * 2 1 3 16 16 O 1.21596 * 119.99989 * 183.51384 * 15 2 1 17 17 C 1.47527 * 120.00041 * 3.51007 * 15 2 1 18 18 C 1.36597 * 125.76991 * 173.09309 * 17 15 2 19 19 N 1.34810 * 106.84116 * 180.18195 * 18 17 15 20 20 C 1.46496 * 126.59660 * 179.84987 * 19 18 17 21 21 C 1.53002 * 109.46958 * 124.71242 * 20 19 18 22 22 H 1.08998 * 110.80754 * 302.82691 * 21 20 19 23 23 C 1.54818 * 110.93494 * 179.17499 * 21 20 19 24 24 C 1.54106 * 104.18488 * 220.91027 * 23 21 20 25 25 O 1.43881 * 107.37651 * 358.10300 * 24 23 21 26 26 C 1.44382 * 106.90169 * 26.27389 * 25 24 23 27 27 N 1.40220 * 106.80770 * 359.59015 * 19 18 17 28 28 N 1.28763 * 108.36627 * 0.26175 * 27 19 18 29 29 H 1.08996 * 109.47474 * 263.94883 * 1 2 3 30 30 H 1.09001 * 109.46719 * 23.95161 * 1 2 3 31 31 H 1.09000 * 109.47202 * 143.94198 * 1 2 3 32 32 H 1.08996 * 109.47089 * 29.99944 * 3 2 1 33 33 H 1.09002 * 109.46752 * 149.99712 * 3 2 1 34 34 H 1.08998 * 109.46974 * 299.99903 * 4 3 2 35 35 H 1.08994 * 109.46994 * 60.00282 * 4 3 2 36 36 H 1.08996 * 109.46891 * 300.00210 * 5 4 3 37 37 H 1.09002 * 109.46922 * 59.99962 * 5 4 3 38 38 H 0.96994 * 120.00653 * 359.97438 * 6 5 4 39 39 H 0.96997 * 120.00245 * 179.97438 * 10 9 7 40 40 H 1.07998 * 126.58022 * 0.04066 * 18 17 15 41 41 H 1.08993 * 109.47201 * 4.71331 * 20 19 18 42 42 H 1.09002 * 109.47371 * 244.70953 * 20 19 18 43 43 H 1.08997 * 110.48902 * 339.58177 * 23 21 20 44 44 H 1.08991 * 110.48345 * 102.10472 * 23 21 20 45 45 H 1.08996 * 109.87898 * 117.39673 * 24 23 21 46 46 H 1.08999 * 109.87706 * 238.39574 * 24 23 21 47 47 H 1.08995 * 110.61914 * 201.57545 * 26 25 24 48 48 H 1.08997 * 110.61355 * 78.73706 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 6 3.2183 3.0350 -1.4425 6 7 3.4620 3.4581 -2.8237 7 6 4.1351 4.6240 -3.0739 8 1 4.4867 5.2314 -2.2530 9 6 4.3656 5.0253 -4.3827 10 7 5.0130 6.1457 -4.6232 11 14 3.7569 3.9751 -5.8025 12 1 2.3834 4.3975 -6.1774 13 1 4.6622 4.1446 -6.9672 14 1 3.7411 2.5481 -5.3914 15 6 2.1388 -1.1673 0.0005 16 8 3.3531 -1.1683 0.0651 17 6 1.4032 -2.4437 -0.0771 18 6 1.9640 -3.6812 -0.2183 19 7 0.9495 -4.5684 -0.2503 20 6 1.0646 -6.0219 -0.3927 21 6 0.3463 -6.7068 0.7718 22 1 0.7521 -6.3734 1.7269 23 6 0.4294 -8.2474 0.6437 24 6 -0.9732 -8.7366 1.0537 25 8 -1.7424 -7.5774 1.4207 26 6 -1.1818 -6.4572 0.7027 27 7 -0.2367 -3.8330 -0.1152 28 7 0.0682 -2.5860 -0.0157 29 1 -0.3634 -0.1083 1.0219 30 1 -0.3633 0.9392 -0.4172 31 1 -0.3633 -0.8308 -0.6049 32 1 1.6085 2.0283 0.5138 33 1 3.1499 1.1382 0.5139 34 1 3.0417 0.9505 -1.9562 35 1 1.5003 1.8406 -1.9563 36 1 2.6296 3.7948 -0.9286 37 1 4.1707 2.9041 -0.9287 38 1 3.1466 2.9124 -3.5610 39 1 5.1744 6.4259 -5.5376 40 1 3.0178 -3.9056 -0.2924 41 1 2.1170 -6.3053 -0.3876 42 1 0.6094 -6.3321 -1.3333 43 1 0.6475 -8.5335 -0.3852 44 1 1.1870 -8.6459 1.3184 45 1 -1.4491 -9.2433 0.2142 46 1 -0.8951 -9.4175 1.9013 47 1 -1.4401 -5.5188 1.1933 48 1 -1.5240 -6.4547 -0.3322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569252378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:10 Heat of formation + Delta-G solvation = 43.517276 kcal Electronic energy + Delta-G solvation = -28414.029060 eV Core-core repulsion = 24314.443649 eV Total energy + Delta-G solvation = -4099.585411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.64647 -40.09766 -39.58669 -36.26876 -35.88936 -34.90788 -32.92662 -32.29062 -31.31108 -30.34996 -29.75730 -27.29182 -26.88492 -25.77131 -23.66871 -23.31536 -22.57018 -22.04593 -21.40092 -20.99980 -19.79739 -18.06222 -17.49635 -17.19188 -16.74789 -16.53676 -16.26609 -16.05591 -15.74832 -15.06525 -15.00441 -14.78683 -14.55837 -14.39065 -13.99907 -13.79652 -13.42430 -13.35330 -13.06173 -12.85633 -12.76429 -12.63668 -12.31825 -12.14106 -12.11086 -12.00198 -11.72824 -11.49993 -11.17793 -11.10973 -10.88991 -10.82688 -10.72794 -10.45191 -10.27866 -10.15102 -10.04801 -9.63747 -9.54810 -8.84268 -8.66018 -7.17534 -5.72125 -3.07061 0.73439 1.42795 1.51826 2.86427 3.12474 3.22560 3.41285 3.44690 3.48350 3.62196 3.76250 3.82952 3.93392 4.26051 4.28075 4.33706 4.42046 4.57953 4.59816 4.63828 4.72546 4.90412 4.98101 5.08604 5.11685 5.13966 5.21282 5.27632 5.28678 5.36087 5.39198 5.55550 5.59399 5.65861 5.86330 5.88410 5.96284 5.99442 6.06888 6.24553 6.31254 6.51637 6.80786 6.82973 7.25347 7.56078 8.03722 8.05225 8.47222 9.26598 9.99246 10.19544 11.46421 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.001799 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.149318 B =15557.098061 C =15944.880116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.119 3.881 4 C -0.144 4.144 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.598 3.402 16 O -0.535 6.535 17 C -0.094 4.094 18 C 0.096 3.904 19 N -0.363 5.363 20 C 0.131 3.869 21 C -0.138 4.138 22 H 0.096 0.904 23 C -0.147 4.147 24 C 0.045 3.955 25 O -0.377 6.377 26 C 0.057 3.943 27 N -0.069 5.069 28 N -0.200 5.200 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.205 0.795 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -33.868 12.886 38.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C -0.004 4.004 4 C -0.183 4.183 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.372 4.372 8 H 0.109 0.891 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.384 3.616 16 O -0.411 6.411 17 C -0.233 4.233 18 C -0.061 4.061 19 N -0.148 5.148 20 C 0.010 3.990 21 C -0.158 4.158 22 H 0.114 0.886 23 C -0.186 4.186 24 C -0.032 4.032 25 O -0.295 6.295 26 C -0.019 4.019 27 N -0.049 5.049 28 N -0.073 5.073 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.222 0.778 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.122 0.878 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.327 -33.754 13.180 38.609 hybrid contribution 0.876 -0.779 -1.443 1.859 sum -12.451 -34.534 11.737 38.540 Atomic orbital electron populations 1.22175 0.78352 1.03852 1.02615 1.47684 1.07776 1.05675 1.71875 1.21548 0.97796 0.83215 0.97806 1.22124 1.01071 0.98965 0.96092 1.20524 0.96643 0.91944 0.87626 1.42705 1.69661 1.26221 1.01647 1.19092 1.27674 0.96848 0.93626 0.89146 1.24669 1.00519 0.97210 0.96883 1.69702 1.46208 1.23037 1.19402 0.86531 0.78425 0.80335 0.83185 1.21100 1.21734 1.20381 1.16823 0.86056 0.81851 0.76883 1.90834 1.12621 1.86749 1.50918 1.21497 0.89986 0.95224 1.16572 1.23404 0.96347 0.88715 0.97607 1.50472 1.06134 1.08642 1.49507 1.22055 1.03718 0.73018 1.00195 1.23078 0.98002 0.95696 0.99017 0.88586 1.22947 0.98878 0.93388 1.03350 1.23180 0.89863 0.89415 1.00697 1.88961 1.55689 1.17174 1.67709 1.23668 0.89674 0.90850 0.97740 1.81955 1.04157 0.96683 1.22132 1.74784 1.12643 1.09510 1.10394 0.92433 0.91064 0.88843 0.89956 0.89340 0.91682 0.91910 0.95419 0.95308 0.80730 0.93118 0.77795 0.86990 0.87871 0.89914 0.89638 0.92053 0.89598 0.87835 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.58 59.85 0.57 1.34 16 2 N -0.60 -7.70 2.87 -182.82 -0.53 -8.22 16 3 C 0.12 1.61 5.41 -4.05 -0.02 1.58 16 4 C -0.14 -2.34 5.65 -26.73 -0.15 -2.49 16 5 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 6 N -0.76 -18.92 5.41 -59.91 -0.32 -19.25 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 10 N -0.94 -30.06 13.97 55.49 0.78 -29.28 16 11 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16 12 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 14 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 15 C 0.60 8.25 7.67 -12.47 -0.10 8.15 16 16 O -0.54 -8.81 16.43 5.28 0.09 -8.72 16 17 C -0.09 -1.06 6.69 -83.55 -0.56 -1.61 16 18 C 0.10 0.77 11.28 -16.84 -0.19 0.58 16 19 N -0.36 -2.48 3.69 -61.07 -0.23 -2.71 16 20 C 0.13 0.38 5.93 -4.04 -0.02 0.36 16 21 C -0.14 -0.52 3.37 -88.61 -0.30 -0.82 16 22 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 23 C -0.15 -0.32 6.60 -25.20 -0.17 -0.49 16 24 C 0.05 0.19 7.70 37.74 0.29 0.48 16 25 O -0.38 -2.96 11.53 -35.23 -0.41 -3.37 16 26 C 0.06 0.36 6.09 38.21 0.23 0.59 16 27 N -0.07 -0.67 11.79 60.35 0.71 0.04 16 28 N -0.20 -2.22 8.82 32.85 0.29 -1.93 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 31 H 0.09 1.01 5.33 -51.93 -0.28 0.74 16 32 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.09 1.28 7.37 -51.93 -0.38 0.90 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.36 8.82 5.53 -40.82 -0.23 8.60 16 39 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 40 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.11 0.03 8.08 -51.93 -0.42 -0.39 16 42 H 0.10 0.20 8.10 -51.93 -0.42 -0.23 16 43 H 0.08 0.05 7.86 -51.93 -0.41 -0.36 16 44 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.10 0.81 7.30 -51.93 -0.38 0.43 16 48 H 0.07 0.39 8.02 -51.93 -0.42 -0.03 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -37.46 392.57 -6.69 -44.15 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.58 Total: 1.73 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.69 Total: 3.56 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.70 Total: -61.35 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.32 Total: -12.09 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.46 -6.69 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569252378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.665 kcal (2) G-P(sol) polarization free energy of solvation -37.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds