Wall clock time and date at job start Tue Mar 31 2020 21:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00253 * 2 1 4 4 C 1.52998 * 109.46989 * 269.99629 * 3 2 1 5 5 C 1.53009 * 109.47017 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46853 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99617 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99904 * 180.02562 * 7 6 5 10 10 N 1.31615 * 119.99999 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00065 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47186 * 89.99946 * 11 9 7 13 13 H 1.48493 * 109.47149 * 210.00293 * 11 9 7 14 14 H 1.48503 * 109.46808 * 329.99797 * 11 9 7 15 15 C 1.34779 * 119.99576 * 179.97438 * 2 1 3 16 16 O 1.21596 * 119.99989 * 183.51384 * 15 2 1 17 17 C 1.47527 * 120.00041 * 3.51007 * 15 2 1 18 18 C 1.36597 * 125.76991 * 173.09309 * 17 15 2 19 19 N 1.34810 * 106.84116 * 180.18195 * 18 17 15 20 20 C 1.46496 * 126.59660 * 179.84987 * 19 18 17 21 21 C 1.53002 * 109.46958 * 124.71242 * 20 19 18 22 22 H 1.08998 * 110.80754 * 302.82691 * 21 20 19 23 23 C 1.54818 * 110.93494 * 179.17499 * 21 20 19 24 24 C 1.54106 * 104.18488 * 220.91027 * 23 21 20 25 25 O 1.43881 * 107.37651 * 358.10300 * 24 23 21 26 26 C 1.44382 * 106.90169 * 26.27389 * 25 24 23 27 27 N 1.40220 * 106.80770 * 359.59015 * 19 18 17 28 28 N 1.28763 * 108.36627 * 0.26175 * 27 19 18 29 29 H 1.08996 * 109.47474 * 263.94883 * 1 2 3 30 30 H 1.09001 * 109.46719 * 23.95161 * 1 2 3 31 31 H 1.09000 * 109.47202 * 143.94198 * 1 2 3 32 32 H 1.08996 * 109.47089 * 29.99944 * 3 2 1 33 33 H 1.09002 * 109.46752 * 149.99712 * 3 2 1 34 34 H 1.08998 * 109.46974 * 299.99903 * 4 3 2 35 35 H 1.08994 * 109.46994 * 60.00282 * 4 3 2 36 36 H 1.08996 * 109.46891 * 300.00210 * 5 4 3 37 37 H 1.09002 * 109.46922 * 59.99962 * 5 4 3 38 38 H 0.96994 * 120.00653 * 359.97438 * 6 5 4 39 39 H 0.96997 * 120.00245 * 179.97438 * 10 9 7 40 40 H 1.07998 * 126.58022 * 0.04066 * 18 17 15 41 41 H 1.08993 * 109.47201 * 4.71331 * 20 19 18 42 42 H 1.09002 * 109.47371 * 244.70953 * 20 19 18 43 43 H 1.08997 * 110.48902 * 339.58177 * 23 21 20 44 44 H 1.08991 * 110.48345 * 102.10472 * 23 21 20 45 45 H 1.08996 * 109.87898 * 117.39673 * 24 23 21 46 46 H 1.08999 * 109.87706 * 238.39574 * 24 23 21 47 47 H 1.08995 * 110.61914 * 201.57545 * 26 25 24 48 48 H 1.08997 * 110.61355 * 78.73706 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 6 3.2183 3.0350 -1.4425 6 7 3.4620 3.4581 -2.8237 7 6 4.1351 4.6240 -3.0739 8 1 4.4867 5.2314 -2.2530 9 6 4.3656 5.0253 -4.3827 10 7 5.0130 6.1457 -4.6232 11 14 3.7569 3.9751 -5.8025 12 1 2.3834 4.3975 -6.1774 13 1 4.6622 4.1446 -6.9672 14 1 3.7411 2.5481 -5.3914 15 6 2.1388 -1.1673 0.0005 16 8 3.3531 -1.1683 0.0651 17 6 1.4032 -2.4437 -0.0771 18 6 1.9640 -3.6812 -0.2183 19 7 0.9495 -4.5684 -0.2503 20 6 1.0646 -6.0219 -0.3927 21 6 0.3463 -6.7068 0.7718 22 1 0.7521 -6.3734 1.7269 23 6 0.4294 -8.2474 0.6437 24 6 -0.9732 -8.7366 1.0537 25 8 -1.7424 -7.5774 1.4207 26 6 -1.1818 -6.4572 0.7027 27 7 -0.2367 -3.8330 -0.1152 28 7 0.0682 -2.5860 -0.0157 29 1 -0.3634 -0.1083 1.0219 30 1 -0.3633 0.9392 -0.4172 31 1 -0.3633 -0.8308 -0.6049 32 1 1.6085 2.0283 0.5138 33 1 3.1499 1.1382 0.5139 34 1 3.0417 0.9505 -1.9562 35 1 1.5003 1.8406 -1.9563 36 1 2.6296 3.7948 -0.9286 37 1 4.1707 2.9041 -0.9287 38 1 3.1466 2.9124 -3.5610 39 1 5.1744 6.4259 -5.5376 40 1 3.0178 -3.9056 -0.2924 41 1 2.1170 -6.3053 -0.3876 42 1 0.6094 -6.3321 -1.3333 43 1 0.6475 -8.5335 -0.3852 44 1 1.1870 -8.6459 1.3184 45 1 -1.4491 -9.2433 0.2142 46 1 -0.8951 -9.4175 1.9013 47 1 -1.4401 -5.5188 1.1933 48 1 -1.5240 -6.4547 -0.3322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569252378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:08 Heat of formation + Delta-G solvation = 15.852505 kcal Electronic energy + Delta-G solvation = -28415.228695 eV Core-core repulsion = 24314.443649 eV Total energy + Delta-G solvation = -4100.785045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.31395 -40.73487 -40.34600 -37.63847 -36.62072 -36.23005 -34.15788 -33.35747 -32.45705 -31.56621 -30.33519 -28.13946 -27.59122 -27.04899 -24.91858 -23.91574 -23.50835 -22.94475 -22.56001 -21.76137 -20.62004 -19.65363 -18.76916 -17.68495 -17.49295 -17.34663 -16.97295 -16.67682 -16.53841 -16.27235 -15.96985 -15.80544 -15.73028 -15.48402 -15.05908 -14.83838 -14.64057 -14.15092 -14.07949 -13.81053 -13.71360 -13.67756 -13.39996 -13.15908 -12.83753 -12.78544 -12.67601 -12.50425 -12.38010 -12.17425 -12.05122 -11.87036 -11.83109 -11.79083 -11.67689 -11.31449 -11.13889 -10.98211 -10.69954 -10.37077 -9.68279 -9.31422 -8.03911 -5.37803 0.11618 0.60092 1.04116 1.36467 1.40070 1.47512 1.92560 2.19231 2.47360 2.87492 3.10923 3.27166 3.30624 3.45999 3.59904 3.61450 3.70587 3.92491 3.96222 4.03864 4.09607 4.20320 4.21703 4.32273 4.35677 4.40207 4.42555 4.46985 4.58580 4.63787 4.73432 4.78003 4.80905 4.84085 4.87363 4.91862 4.98446 5.13115 5.16155 5.27647 5.29211 5.41632 5.54154 5.74451 5.87498 6.20193 6.27967 6.82253 7.06024 7.07713 7.82470 8.01628 9.17531 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.001799 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.149318 B =15557.098061 C =15944.880116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.125 3.875 4 C -0.126 4.126 5 C 0.157 3.843 6 N -0.761 5.761 7 C -0.239 4.239 8 H 0.058 0.942 9 C -0.064 4.064 10 N -0.982 5.982 11 Si 0.958 3.042 12 H -0.274 1.274 13 H -0.293 1.293 14 H -0.257 1.257 15 C 0.594 3.406 16 O -0.571 6.571 17 C -0.123 4.123 18 C 0.112 3.888 19 N -0.349 5.349 20 C 0.123 3.877 21 C -0.131 4.131 22 H 0.086 0.914 23 C -0.136 4.136 24 C 0.034 3.966 25 O -0.410 6.410 26 C 0.053 3.947 27 N -0.085 5.085 28 N -0.215 5.215 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.022 0.978 38 H 0.365 0.635 39 H 0.259 0.741 40 H 0.234 0.766 41 H 0.150 0.850 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -36.979 12.245 41.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.002 3.998 4 C -0.165 4.165 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.370 4.370 8 H 0.076 0.924 9 C -0.256 4.256 10 N -0.633 5.633 11 Si 0.784 3.216 12 H -0.200 1.200 13 H -0.220 1.220 14 H -0.182 1.182 15 C 0.381 3.619 16 O -0.450 6.450 17 C -0.262 4.262 18 C -0.046 4.046 19 N -0.133 5.133 20 C 0.004 3.996 21 C -0.150 4.150 22 H 0.104 0.896 23 C -0.174 4.174 24 C -0.042 4.042 25 O -0.330 6.330 26 C -0.023 4.023 27 N -0.065 5.065 28 N -0.088 5.088 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.198 0.802 39 H 0.067 0.933 40 H 0.250 0.750 41 H 0.168 0.832 42 H 0.139 0.861 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.009 -36.922 12.576 41.444 hybrid contribution 1.046 0.120 -1.121 1.538 sum -12.963 -36.802 11.455 40.665 Atomic orbital electron populations 1.22261 0.76808 1.04395 1.03250 1.47761 1.08683 1.05205 1.71429 1.21415 0.98113 0.84368 0.95920 1.21928 1.00463 0.96143 0.97979 1.20688 0.97011 0.94143 0.85129 1.42741 1.69165 1.24942 1.03832 1.19088 1.27217 0.97794 0.92915 0.92380 1.25532 1.01265 0.98784 0.99974 1.69883 1.48118 1.25256 1.20030 0.85371 0.77909 0.79379 0.78899 1.20022 1.21951 1.18179 1.17184 0.85830 0.82805 0.76053 1.90802 1.14075 1.87398 1.52724 1.21350 0.90362 0.95242 1.19252 1.23805 0.97529 0.87781 0.95453 1.50728 1.04987 1.09892 1.47730 1.22535 1.06183 0.70430 1.00411 1.22980 0.95947 0.97102 0.99015 0.89585 1.22932 0.97735 0.91636 1.05130 1.23420 0.90955 0.88535 1.01309 1.88920 1.57088 1.18583 1.68407 1.23655 0.91693 0.89726 0.97235 1.81901 1.05507 0.96512 1.22542 1.74752 1.12742 1.10349 1.10972 0.91600 0.89824 0.89120 0.87497 0.90517 0.93302 0.90892 0.94462 0.96024 0.80234 0.93251 0.74992 0.83207 0.86131 0.87563 0.88264 0.91348 0.89132 0.90148 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 9.58 127.77 1.22 2.68 16 2 N -0.60 -14.77 2.87 -850.57 -2.44 -17.21 16 3 C 0.12 3.22 5.41 86.38 0.47 3.69 16 4 C -0.13 -3.94 5.65 30.60 0.17 -3.77 16 5 C 0.16 6.17 6.26 86.38 0.54 6.72 16 6 N -0.76 -37.47 5.41 -343.45 -1.86 -39.33 16 7 C -0.24 -14.22 10.47 84.03 0.88 -13.34 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 9 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 10 N -0.98 -64.31 13.97 21.65 0.30 -64.00 16 11 Si 0.96 46.80 27.74 68.60 1.90 48.70 16 12 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 14 H -0.26 -11.55 6.52 99.48 0.65 -10.90 16 15 C 0.59 15.97 7.67 86.69 0.66 16.64 16 16 O -0.57 -18.63 16.43 -4.02 -0.07 -18.69 16 17 C -0.12 -2.63 6.69 40.82 0.27 -2.36 16 18 C 0.11 1.55 11.28 83.85 0.95 2.49 16 19 N -0.35 -3.96 3.69 -347.11 -1.28 -5.24 16 20 C 0.12 0.28 5.93 86.38 0.51 0.80 16 21 C -0.13 -0.70 3.37 -9.49 -0.03 -0.73 16 22 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 23 C -0.14 -0.17 6.60 31.59 0.21 0.04 16 24 C 0.03 0.24 7.70 72.36 0.56 0.79 16 25 O -0.41 -6.37 11.53 -148.98 -1.72 -8.09 16 26 C 0.05 0.64 6.09 72.67 0.44 1.08 16 27 N -0.08 -1.55 11.79 37.02 0.44 -1.11 16 28 N -0.21 -4.59 8.82 -49.99 -0.44 -5.03 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.09 1.87 5.33 -2.39 -0.01 1.86 16 32 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.08 2.19 7.37 -2.39 -0.02 2.17 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.36 17.18 5.53 -92.71 -0.51 16.66 16 39 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.23 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.15 -0.69 8.08 -2.39 -0.02 -0.71 16 42 H 0.12 -0.03 8.10 -2.39 -0.02 -0.05 16 43 H 0.11 -0.33 7.86 -2.39 -0.02 -0.35 16 44 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.08 1.31 7.30 -2.39 -0.02 1.29 16 48 H 0.07 0.75 8.02 -2.39 -0.02 0.73 16 Total: -1.00 -83.61 392.57 2.55 -81.06 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.39 Total: 17.64 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 7.32 Total: 11.30 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.28 Total: -131.92 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.78 Total: -26.78 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.90 Total: 48.70 kcal Total: -83.61 2.55 -81.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569252378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.911 kcal (2) G-P(sol) polarization free energy of solvation -83.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds