Wall clock time and date at job start Tue Mar 31 2020 21:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00290 * 2 1 4 4 C 1.53001 * 109.47397 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47332 * 64.99815 * 4 3 2 6 6 C 1.36936 * 120.00389 * 270.00705 * 5 4 3 7 7 H 1.07994 * 120.00257 * 142.01022 * 6 5 4 8 8 C 1.38815 * 119.99530 * 322.00520 * 6 5 4 9 9 N 1.31616 * 120.00156 * 339.40994 * 8 6 5 10 10 Si 1.86801 * 119.99598 * 159.41077 * 8 6 5 11 11 H 1.48494 * 109.47192 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46773 * 120.00101 * 10 8 6 13 13 H 1.48502 * 109.47045 * 240.00073 * 10 8 6 14 14 C 1.46504 * 119.99664 * 89.99854 * 5 4 3 15 15 C 1.53040 * 109.45684 * 121.12015 * 14 5 4 16 16 C 1.53191 * 109.31267 * 181.38633 * 15 14 5 17 17 N 1.46924 * 108.77589 * 305.36748 * 16 15 14 18 18 C 1.34779 * 120.62965 * 233.58285 * 17 16 15 19 19 O 1.21554 * 120.00532 * 6.03247 * 18 17 16 20 20 C 1.47876 * 119.99922 * 186.02727 * 18 17 16 21 21 N 1.34553 * 126.04597 * 7.50941 * 20 18 17 22 22 C 1.30871 * 107.26777 * 180.02562 * 21 20 18 23 23 N 1.34582 * 107.62630 * 359.97438 * 22 21 20 24 24 C 1.46497 * 125.75188 * 179.73383 * 23 22 21 25 25 N 1.28850 * 108.50454 * 0.02562 * 23 22 21 26 26 C 1.46924 * 118.73963 * 53.86190 * 17 16 15 27 27 C 1.53040 * 109.46295 * 241.19267 * 14 5 4 28 28 H 1.08999 * 109.47307 * 59.99300 * 1 2 3 29 29 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47016 * 299.99414 * 1 2 3 31 31 H 1.09004 * 109.46872 * 60.00119 * 3 2 1 32 32 H 1.09000 * 109.47149 * 300.00687 * 3 2 1 33 33 H 1.09008 * 109.46752 * 305.00038 * 4 3 2 34 34 H 1.08996 * 109.46890 * 185.00699 * 4 3 2 35 35 H 0.96999 * 119.99831 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.45981 * 1.15472 * 14 5 4 37 37 H 1.09003 * 109.49597 * 61.43680 * 15 14 5 38 38 H 1.08997 * 109.52980 * 301.35955 * 15 14 5 39 39 H 1.09007 * 109.58732 * 185.58198 * 16 15 14 40 40 H 1.09000 * 109.70788 * 65.22591 * 16 15 14 41 41 H 1.08001 * 126.18714 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47096 * 90.00115 * 24 23 22 43 43 H 1.09001 * 109.47497 * 210.00568 * 24 23 22 44 44 H 1.09008 * 109.47082 * 330.00314 * 24 23 22 45 45 H 1.08995 * 109.58751 * 65.92673 * 26 17 16 46 46 H 1.09004 * 109.59003 * 186.35100 * 26 17 16 47 47 H 1.09005 * 109.49432 * 298.56383 * 27 14 5 48 48 H 1.08992 * 109.49600 * 58.66516 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0967 -0.7971 -1.3369 7 1 3.8151 -1.3091 -2.2451 8 6 4.5815 -1.5190 -0.2549 9 7 5.2910 -0.9149 0.6746 10 14 4.2267 -3.3479 -0.1180 11 1 3.4152 -3.7832 -1.2830 12 1 5.5068 -4.1002 -0.0982 13 1 3.4766 -3.6142 1.1356 14 6 4.2864 1.4006 -2.4147 15 6 5.7369 1.1627 -2.8408 16 6 6.0687 2.0640 -4.0343 17 7 5.0811 1.8258 -5.0957 18 6 5.4779 1.5099 -6.3444 19 8 6.6545 1.3120 -6.5766 20 6 4.4817 1.4039 -7.4322 21 7 3.1796 1.7325 -7.3481 22 6 2.6425 1.4940 -8.5174 23 7 3.6115 1.0195 -9.3218 24 6 3.4426 0.6185 -10.7207 25 7 4.7116 0.9717 -8.6527 26 6 3.6530 1.9446 -4.7716 27 6 3.3481 1.0392 -3.5685 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8514 0.5680 0.8410 34 1 3.9785 2.1764 0.0890 35 1 5.6294 -1.4193 1.4309 36 1 4.1523 2.4502 -2.1530 37 1 5.8656 0.1187 -3.1265 38 1 6.4036 1.3976 -2.0111 39 1 7.0666 1.8282 -4.4040 40 1 6.0303 3.1093 -3.7274 41 1 1.6087 1.6504 -8.7881 42 1 3.6198 1.4768 -11.3687 43 1 4.1546 -0.1712 -10.9608 44 1 2.4277 0.2512 -10.8734 45 1 3.4199 2.9797 -4.5218 46 1 3.0565 1.6300 -5.6279 47 1 3.4994 -0.0036 -3.8474 48 1 2.3143 1.1867 -3.2565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569454537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:44 Heat of formation + Delta-G solvation = 61.493567 kcal Electronic energy + Delta-G solvation = -30597.703916 eV Core-core repulsion = 26498.898016 eV Total energy + Delta-G solvation = -4098.805900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.60601 -39.62828 -37.52624 -36.73611 -35.05588 -34.63713 -31.96136 -31.85986 -30.72380 -30.35228 -28.34581 -27.75730 -25.61821 -25.14074 -23.84350 -22.96532 -22.81626 -21.91357 -20.71420 -19.96318 -19.05466 -17.57544 -16.98882 -16.63150 -16.09033 -16.01131 -15.63799 -15.00585 -14.88937 -14.80999 -14.69312 -13.96546 -13.89089 -13.72530 -13.54944 -13.50020 -13.37259 -12.98534 -12.88043 -12.38158 -12.14005 -11.68767 -11.63377 -11.46251 -11.25108 -10.83114 -10.72578 -10.71804 -10.63478 -10.51474 -10.40933 -10.24156 -10.03430 -9.80735 -9.71425 -9.69650 -9.47836 -9.27718 -8.76280 -8.28316 -8.23536 -6.39833 -5.60657 -3.16559 1.32465 1.97275 2.00563 3.10430 3.47383 3.50406 3.57730 3.61183 3.98219 4.11847 4.51860 4.59287 4.64314 4.74394 4.79790 4.90180 5.33774 5.47337 5.54054 5.70647 5.74481 5.78485 5.80280 5.83119 5.94667 5.97161 6.08095 6.09960 6.17032 6.18856 6.22155 6.24453 6.40372 6.50602 6.57713 6.70057 6.75035 6.78177 6.86543 7.01386 7.27325 7.35356 7.61673 7.74162 7.87836 8.01408 8.13847 8.36637 8.71262 9.35864 9.99582 10.55093 11.40863 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003282 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.004981 B = 8528.213095 C = 8894.106890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.572 5.572 6 C -0.229 4.229 7 H 0.055 0.945 8 C 0.018 3.982 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.290 1.290 14 C 0.175 3.825 15 C -0.131 4.131 16 C 0.113 3.887 17 N -0.581 5.581 18 C 0.609 3.391 19 O -0.530 6.530 20 C 0.157 3.843 21 N -0.478 5.478 22 C 0.187 3.813 23 N -0.308 5.308 24 C 0.086 3.914 25 N -0.256 5.256 26 C 0.079 3.921 27 C -0.137 4.137 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.022 0.978 32 H 0.027 0.973 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.250 0.750 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.131 0.869 47 H 0.065 0.935 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 8.006 -17.472 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.291 5.291 6 C -0.359 4.359 7 H 0.072 0.928 8 C -0.181 4.181 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.217 1.217 14 C 0.068 3.932 15 C -0.171 4.171 16 C -0.009 4.009 17 N -0.313 5.313 18 C 0.392 3.608 19 O -0.404 6.404 20 C -0.123 4.123 21 N -0.203 5.203 22 C -0.108 4.108 23 N -0.103 5.103 24 C -0.055 4.055 25 N -0.094 5.094 26 C -0.044 4.044 27 C -0.177 4.177 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.242 0.758 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.147 0.853 47 H 0.083 0.917 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.238 7.573 -17.367 20.660 hybrid contribution -1.028 -0.743 -0.039 1.269 sum -9.266 6.830 -17.407 20.869 Atomic orbital electron populations 1.22623 0.84444 1.01363 0.98316 1.88224 1.16363 1.27740 1.94789 1.23463 0.99069 0.84027 0.96656 1.21031 0.87330 0.96562 0.93389 1.43742 1.75249 1.02700 1.07413 1.18753 1.35364 0.81604 1.00208 0.92753 1.25007 0.96641 0.97289 0.99173 1.69956 1.35215 1.35351 1.13192 0.86375 0.77266 0.86295 0.77627 1.20421 1.22285 1.21671 1.20381 0.91390 0.93316 0.88140 1.22277 0.99354 1.00122 0.95365 1.21855 0.92322 0.99398 0.87367 1.47873 1.08983 1.66778 1.07651 1.16354 0.85443 0.77950 0.81015 1.90795 1.16793 1.50500 1.82336 1.23865 0.91410 1.04288 0.92776 1.71165 1.06421 1.22382 1.20379 1.26680 0.98271 0.99273 0.86574 1.47371 1.05769 1.44306 1.12845 1.22234 1.04971 1.02956 0.75303 1.74360 1.09448 1.19775 1.05853 1.22844 0.80065 0.99991 1.01481 1.22418 1.00268 0.99887 0.95094 0.95352 0.90854 0.95640 0.95983 0.95508 0.87952 0.94328 0.93983 0.93593 0.90984 0.90801 0.89626 0.91822 0.75800 0.89214 0.88198 0.88018 0.92274 0.85250 0.91661 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.76 10.18 -35.23 -0.36 -8.12 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.14 3.28 5.69 -4.04 -0.02 3.26 16 5 N -0.57 -13.61 2.34 -165.62 -0.39 -13.99 16 6 C -0.23 -6.17 7.70 -15.06 -0.12 -6.28 16 7 H 0.05 1.52 6.94 -52.49 -0.36 1.16 16 8 C 0.02 0.50 4.97 -17.43 -0.09 0.41 16 9 N -0.89 -25.72 11.45 55.49 0.64 -25.09 16 10 Si 0.89 22.69 29.60 -169.99 -5.03 17.66 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 C 0.18 3.52 2.59 -67.89 -0.18 3.35 16 15 C -0.13 -2.63 5.29 -26.61 -0.14 -2.77 16 16 C 0.11 1.94 6.44 -3.71 -0.02 1.92 16 17 N -0.58 -10.06 2.97 -173.60 -0.51 -10.57 16 18 C 0.61 11.28 7.70 -12.31 -0.09 11.19 16 19 O -0.53 -11.25 16.51 5.32 0.09 -11.16 16 20 C 0.16 2.51 7.66 -156.35 -1.20 1.32 16 21 N -0.48 -6.29 7.84 -12.36 -0.10 -6.38 16 22 C 0.19 1.63 12.62 -90.48 -1.14 0.49 16 23 N -0.31 -2.91 3.72 -69.39 -0.26 -3.16 16 24 C 0.09 0.31 11.38 59.85 0.68 0.99 16 25 N -0.26 -3.75 12.09 32.08 0.39 -3.36 16 26 C 0.08 1.25 6.15 -3.49 -0.02 1.22 16 27 C -0.14 -2.51 5.34 -26.39 -0.14 -2.66 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 2.72 5.51 -51.92 -0.29 2.44 16 34 H 0.04 0.81 7.91 -51.93 -0.41 0.40 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.05 0.86 7.79 -51.93 -0.40 0.46 16 37 H 0.07 1.66 7.68 -51.93 -0.40 1.26 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.53 7.00 -51.92 -0.36 1.16 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.23 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.03 8.14 -51.92 -0.42 -0.39 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.13 1.98 4.06 -63.72 -0.26 1.72 16 47 H 0.06 1.37 7.10 -51.93 -0.37 1.00 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -36.12 386.86 -8.33 -44.44 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.49 Total: -1.30 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -1.13 Total: 15.21 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.23 Total: -62.56 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.27 Total: -19.28 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.12 -8.33 -44.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569454537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.937 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds