Wall clock time and date at job start Tue Mar 31 2020 21:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00290 * 2 1 4 4 C 1.53001 * 109.47397 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47332 * 64.99815 * 4 3 2 6 6 C 1.36936 * 120.00389 * 270.00705 * 5 4 3 7 7 H 1.07994 * 120.00257 * 142.01022 * 6 5 4 8 8 C 1.38815 * 119.99530 * 322.00520 * 6 5 4 9 9 N 1.31616 * 120.00156 * 339.40994 * 8 6 5 10 10 Si 1.86801 * 119.99598 * 159.41077 * 8 6 5 11 11 H 1.48494 * 109.47192 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46773 * 120.00101 * 10 8 6 13 13 H 1.48502 * 109.47045 * 240.00073 * 10 8 6 14 14 C 1.46504 * 119.99664 * 89.99854 * 5 4 3 15 15 C 1.53040 * 109.45684 * 121.12015 * 14 5 4 16 16 C 1.53191 * 109.31267 * 181.38633 * 15 14 5 17 17 N 1.46924 * 108.77589 * 305.36748 * 16 15 14 18 18 C 1.34779 * 120.62965 * 233.58285 * 17 16 15 19 19 O 1.21554 * 120.00532 * 6.03247 * 18 17 16 20 20 C 1.47876 * 119.99922 * 186.02727 * 18 17 16 21 21 N 1.34553 * 126.04597 * 7.50941 * 20 18 17 22 22 C 1.30871 * 107.26777 * 180.02562 * 21 20 18 23 23 N 1.34582 * 107.62630 * 359.97438 * 22 21 20 24 24 C 1.46497 * 125.75188 * 179.73383 * 23 22 21 25 25 N 1.28850 * 108.50454 * 0.02562 * 23 22 21 26 26 C 1.46924 * 118.73963 * 53.86190 * 17 16 15 27 27 C 1.53040 * 109.46295 * 241.19267 * 14 5 4 28 28 H 1.08999 * 109.47307 * 59.99300 * 1 2 3 29 29 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47016 * 299.99414 * 1 2 3 31 31 H 1.09004 * 109.46872 * 60.00119 * 3 2 1 32 32 H 1.09000 * 109.47149 * 300.00687 * 3 2 1 33 33 H 1.09008 * 109.46752 * 305.00038 * 4 3 2 34 34 H 1.08996 * 109.46890 * 185.00699 * 4 3 2 35 35 H 0.96999 * 119.99831 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.45981 * 1.15472 * 14 5 4 37 37 H 1.09003 * 109.49597 * 61.43680 * 15 14 5 38 38 H 1.08997 * 109.52980 * 301.35955 * 15 14 5 39 39 H 1.09007 * 109.58732 * 185.58198 * 16 15 14 40 40 H 1.09000 * 109.70788 * 65.22591 * 16 15 14 41 41 H 1.08001 * 126.18714 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47096 * 90.00115 * 24 23 22 43 43 H 1.09001 * 109.47497 * 210.00568 * 24 23 22 44 44 H 1.09008 * 109.47082 * 330.00314 * 24 23 22 45 45 H 1.08995 * 109.58751 * 65.92673 * 26 17 16 46 46 H 1.09004 * 109.59003 * 186.35100 * 26 17 16 47 47 H 1.09005 * 109.49432 * 298.56383 * 27 14 5 48 48 H 1.08992 * 109.49600 * 58.66516 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0967 -0.7971 -1.3369 7 1 3.8151 -1.3091 -2.2451 8 6 4.5815 -1.5190 -0.2549 9 7 5.2910 -0.9149 0.6746 10 14 4.2267 -3.3479 -0.1180 11 1 3.4152 -3.7832 -1.2830 12 1 5.5068 -4.1002 -0.0982 13 1 3.4766 -3.6142 1.1356 14 6 4.2864 1.4006 -2.4147 15 6 5.7369 1.1627 -2.8408 16 6 6.0687 2.0640 -4.0343 17 7 5.0811 1.8258 -5.0957 18 6 5.4779 1.5099 -6.3444 19 8 6.6545 1.3120 -6.5766 20 6 4.4817 1.4039 -7.4322 21 7 3.1796 1.7325 -7.3481 22 6 2.6425 1.4940 -8.5174 23 7 3.6115 1.0195 -9.3218 24 6 3.4426 0.6185 -10.7207 25 7 4.7116 0.9717 -8.6527 26 6 3.6530 1.9446 -4.7716 27 6 3.3481 1.0392 -3.5685 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8514 0.5680 0.8410 34 1 3.9785 2.1764 0.0890 35 1 5.6294 -1.4193 1.4309 36 1 4.1523 2.4502 -2.1530 37 1 5.8656 0.1187 -3.1265 38 1 6.4036 1.3976 -2.0111 39 1 7.0666 1.8282 -4.4040 40 1 6.0303 3.1093 -3.7274 41 1 1.6087 1.6504 -8.7881 42 1 3.6198 1.4768 -11.3687 43 1 4.1546 -0.1712 -10.9608 44 1 2.4277 0.2512 -10.8734 45 1 3.4199 2.9797 -4.5218 46 1 3.0565 1.6300 -5.6279 47 1 3.4994 -0.0036 -3.8474 48 1 2.3143 1.1867 -3.2565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569454537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:43 Heat of formation + Delta-G solvation = 37.630712 kcal Electronic energy + Delta-G solvation = -30598.738687 eV Core-core repulsion = 26498.898016 eV Total energy + Delta-G solvation = -4099.840671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.46893 -41.03943 -39.14445 -38.25805 -36.57791 -35.58700 -33.72375 -32.78635 -32.37223 -31.88258 -29.83540 -28.68608 -27.12037 -26.60700 -25.33443 -24.36472 -23.96685 -22.98995 -22.27833 -21.52186 -20.43938 -18.76966 -18.04787 -17.78061 -17.64963 -17.17869 -17.12475 -16.65043 -16.49134 -16.11756 -15.84665 -15.63272 -15.46595 -15.18847 -14.99366 -14.59194 -14.37155 -14.12202 -13.94836 -13.66185 -13.41660 -13.36405 -13.18468 -12.88348 -12.74396 -12.69389 -12.52270 -12.31732 -12.19785 -12.05088 -11.84272 -11.64572 -11.48369 -11.45438 -11.42924 -11.13554 -10.70379 -10.56191 -10.33161 -10.25805 -9.64967 -8.39106 -7.68341 -5.26870 0.30291 1.11852 1.31743 1.43886 1.47321 1.55132 1.96323 2.23174 2.59081 3.01401 3.27135 3.42009 3.43868 3.65200 3.84683 4.05242 4.27302 4.28510 4.36266 4.40286 4.43722 4.47593 4.50248 4.58461 4.67413 4.69832 4.70953 4.75438 4.78863 4.84237 4.87512 4.94707 4.97448 5.04660 5.08721 5.15168 5.24404 5.42814 5.47739 5.63435 5.65376 5.79566 5.88721 5.91364 6.29019 6.55935 6.74355 6.84425 7.11530 7.33425 8.02769 8.51558 9.27436 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003282 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.004981 B = 8528.213095 C = 8894.106890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.056 3.944 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.215 4.215 7 H 0.037 0.963 8 C -0.028 4.028 9 N -0.918 5.918 10 Si 0.937 3.063 11 H -0.277 1.277 12 H -0.299 1.299 13 H -0.292 1.292 14 C 0.172 3.828 15 C -0.119 4.119 16 C 0.121 3.879 17 N -0.582 5.582 18 C 0.602 3.398 19 O -0.572 6.572 20 C 0.125 3.875 21 N -0.501 5.501 22 C 0.208 3.792 23 N -0.300 5.300 24 C 0.074 3.926 25 N -0.286 5.286 26 C 0.088 3.912 27 C -0.122 4.122 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.245 0.755 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.284 0.716 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.084 0.916 46 H 0.143 0.857 47 H 0.030 0.970 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 9.670 -19.712 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.022 4.022 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.346 4.346 7 H 0.055 0.945 8 C -0.224 4.224 9 N -0.564 5.564 10 Si 0.768 3.232 11 H -0.202 1.202 12 H -0.227 1.227 13 H -0.219 1.219 14 C 0.065 3.935 15 C -0.159 4.159 16 C -0.001 4.001 17 N -0.313 5.313 18 C 0.387 3.613 19 O -0.450 6.450 20 C -0.154 4.154 21 N -0.228 5.228 22 C -0.086 4.086 23 N -0.095 5.095 24 C -0.064 4.064 25 N -0.127 5.127 26 C -0.034 4.034 27 C -0.162 4.162 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.300 0.700 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.162 0.838 45 H 0.103 0.897 46 H 0.159 0.841 47 H 0.049 0.951 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.541 9.249 -19.639 24.585 hybrid contribution -0.124 -1.250 0.489 1.348 sum -11.665 7.998 -19.149 23.806 Atomic orbital electron populations 1.22803 0.81738 1.02415 1.00063 1.88146 1.19462 1.28909 1.95179 1.23251 0.96664 0.83873 0.98442 1.20985 0.89800 0.96302 0.91543 1.43903 1.75628 1.02064 1.08701 1.18694 1.33441 0.83362 0.99107 0.94523 1.25462 0.97547 0.99762 0.99645 1.70059 1.36751 1.35962 1.13628 0.85680 0.76725 0.83572 0.77235 1.20236 1.22677 1.21940 1.20572 0.91399 0.93979 0.87516 1.22090 0.99475 0.98283 0.96065 1.21723 0.92006 1.00195 0.86188 1.47950 1.09562 1.66395 1.07437 1.16777 0.85624 0.76992 0.81859 1.90749 1.18707 1.52338 1.83182 1.23321 0.92221 1.07129 0.92691 1.70944 1.05106 1.23694 1.23030 1.27697 0.99779 0.96231 0.84847 1.47801 1.04507 1.42883 1.14316 1.22774 1.07408 1.03784 0.72454 1.74259 1.12239 1.20295 1.05928 1.22913 0.79246 1.00616 1.00585 1.22226 1.00085 0.98439 0.95429 0.93666 0.90308 0.93646 0.93698 0.93873 0.91777 0.92758 0.94603 0.91145 0.95091 0.92387 0.90762 0.88692 0.70044 0.87236 0.88821 0.83762 0.89737 0.84070 0.95147 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.02 10.18 -148.98 -1.52 -18.53 16 3 C 0.06 2.15 6.28 71.98 0.45 2.60 16 4 C 0.14 6.35 5.69 86.38 0.49 6.84 16 5 N -0.58 -27.98 2.34 -677.89 -1.59 -29.57 16 6 C -0.21 -11.88 7.70 84.03 0.65 -11.23 16 7 H 0.04 2.15 6.94 -2.91 -0.02 2.13 16 8 C -0.03 -1.61 4.97 84.86 0.42 -1.19 16 9 N -0.92 -54.66 11.45 21.65 0.25 -54.41 16 10 Si 0.94 47.93 29.60 68.60 2.03 49.96 16 11 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 13 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 14 C 0.17 6.84 2.59 45.02 0.12 6.96 16 15 C -0.12 -4.93 5.29 30.67 0.16 -4.76 16 16 C 0.12 4.20 6.44 86.36 0.56 4.76 16 17 N -0.58 -20.08 2.97 -821.43 -2.44 -22.52 16 18 C 0.60 22.75 7.70 86.80 0.67 23.42 16 19 O -0.57 -25.38 16.51 -3.89 -0.06 -25.44 16 20 C 0.12 3.95 7.66 137.13 1.05 5.00 16 21 N -0.50 -11.98 7.84 -193.02 -1.51 -13.50 16 22 C 0.21 2.78 12.62 180.30 2.27 5.06 16 23 N -0.30 -4.79 3.72 -373.46 -1.39 -6.18 16 24 C 0.07 0.26 11.38 127.77 1.45 1.71 16 25 N -0.29 -8.16 12.09 -52.43 -0.63 -8.80 16 26 C 0.09 2.64 6.15 86.51 0.53 3.17 16 27 C -0.12 -4.39 5.34 30.82 0.16 -4.23 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 3.48 5.51 -2.38 -0.01 3.47 16 34 H 0.05 2.23 7.91 -2.39 -0.02 2.21 16 35 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.07 2.49 7.79 -2.39 -0.02 2.47 16 37 H 0.03 1.50 7.68 -2.39 -0.02 1.48 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 2.76 7.00 -2.38 -0.02 2.74 16 40 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.28 -0.07 8.06 -2.91 -0.02 -0.09 16 42 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.14 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.14 4.05 4.06 -25.68 -0.10 3.94 16 47 H 0.03 1.29 7.10 -2.38 -0.02 1.28 16 48 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -84.76 386.86 4.24 -80.51 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.87 Total: 8.30 kcal Atomic # 6 Polarization: 29.93 SS G_CDS: 10.24 Total: 40.17 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -7.31 Total: -134.97 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.58 Total: -43.97 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -84.76 4.24 -80.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569454537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.142 kcal (2) G-P(sol) polarization free energy of solvation -84.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds