Wall clock time and date at job start Tue Mar 31 2020 19:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46492 * 109.47644 * 2 1 4 4 N 1.28525 * 124.44424 * 270.31023 * 3 2 1 5 5 C 1.31127 * 109.05847 * 180.17337 * 4 3 2 6 6 C 1.50699 * 127.10840 * 179.82939 * 5 4 3 7 7 C 1.40921 * 105.77742 * 359.57828 * 5 4 3 8 8 C 1.47800 * 127.23558 * 180.26393 * 7 5 4 9 9 O 1.21557 * 120.00219 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99683 * 179.97438 * 8 7 5 11 11 C 1.46504 * 119.99693 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47015 * 176.04756 * 11 10 8 13 13 N 1.46502 * 109.54013 * 54.58264 * 12 11 10 14 14 C 1.36935 * 120.00330 * 62.70158 * 13 12 11 15 15 H 1.08002 * 119.99524 * 353.59283 * 14 13 12 16 16 C 1.38813 * 120.00099 * 173.58775 * 14 13 12 17 17 N 1.31613 * 119.99808 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99828 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47251 * 90.00217 * 18 16 14 20 20 H 1.48501 * 109.47029 * 210.00007 * 18 16 14 21 21 H 1.48502 * 109.47533 * 329.99990 * 18 16 14 22 22 C 1.53173 * 109.54271 * 294.40420 * 12 11 10 23 23 C 1.53103 * 109.15426 * 183.24060 * 22 12 11 24 24 O 1.42896 * 109.49054 * 57.47631 * 23 22 12 25 25 C 1.42903 * 114.09798 * 298.88814 * 24 23 22 26 26 C 1.53098 * 109.41536 * 61.15709 * 25 24 23 27 27 N 1.28590 * 124.44715 * 89.99664 * 3 2 1 28 28 H 1.09003 * 109.47134 * 59.99981 * 1 2 3 29 29 H 1.08997 * 109.47870 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 300.00685 * 1 2 3 31 31 H 1.09001 * 109.47066 * 239.99315 * 2 1 3 32 32 H 1.08998 * 109.47011 * 120.00488 * 2 1 3 33 33 H 1.09001 * 109.47443 * 269.69068 * 6 5 4 34 34 H 1.09001 * 109.47273 * 29.69303 * 6 5 4 35 35 H 1.09010 * 109.47213 * 149.69332 * 6 5 4 36 36 H 0.96994 * 120.00460 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46999 * 296.04973 * 11 10 8 38 38 H 1.09002 * 109.47041 * 56.04662 * 11 10 8 39 39 H 0.97002 * 119.99519 * 242.70035 * 13 12 11 40 40 H 0.97001 * 119.99689 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.52475 * 303.05726 * 22 12 11 42 42 H 1.09003 * 109.52656 * 63.24724 * 22 12 11 43 43 H 1.09000 * 109.40809 * 297.49375 * 23 22 12 44 44 H 1.09006 * 109.49260 * 177.50839 * 23 22 12 45 45 H 1.09001 * 109.48230 * 301.17302 * 25 24 23 46 46 H 1.09002 * 109.49305 * 181.14225 * 25 24 23 47 47 H 1.08996 * 109.52264 * 182.49140 * 26 25 24 48 48 H 1.08990 * 109.57401 * 62.32716 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2553 2.0684 -1.0599 5 6 2.6822 3.2584 -0.7120 6 6 3.0808 4.3855 -1.6296 7 6 2.6855 3.2675 0.6971 8 6 3.0797 4.3827 1.5834 9 8 3.4526 5.4363 1.1054 10 7 3.0258 4.2313 2.9216 11 6 3.4171 5.3366 3.8001 12 6 3.1712 4.9412 5.2575 13 7 3.8628 3.6826 5.5472 14 6 5.2278 3.6160 5.4618 15 1 5.7868 4.4585 5.0820 16 6 5.8931 2.4658 5.8635 17 7 7.2052 2.4020 5.7820 18 14 4.9261 1.0086 6.5199 19 1 4.5642 0.1080 5.3960 20 1 5.7561 0.2657 7.5020 21 1 3.6894 1.4936 7.1836 22 6 1.6680 4.7662 5.4943 23 6 1.4258 4.4504 6.9727 24 8 1.9686 5.4977 7.7791 25 6 3.3793 5.6741 7.6343 26 6 3.7000 6.0413 6.1830 27 7 2.2608 2.0669 1.0604 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 4.1458 4.3146 -1.8508 34 1 2.5118 4.3177 -2.5568 35 1 2.8732 5.3395 -1.1447 36 1 2.7279 3.3908 3.3030 37 1 4.4748 5.5574 3.6570 38 1 2.8257 6.2197 3.5584 39 1 3.3536 2.8964 5.7995 40 1 7.6700 1.5982 6.0623 41 1 1.1480 5.6869 5.2298 42 1 1.2953 3.9469 4.8796 43 1 1.9111 3.5079 7.2260 44 1 0.3544 4.3685 7.1563 45 1 3.8903 4.7476 7.8962 46 1 3.7156 6.4738 8.2943 47 1 4.7791 6.1329 6.0604 48 1 3.2231 6.9887 5.9322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569735863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:23 Heat of formation + Delta-G solvation = 36.601047 kcal Electronic energy + Delta-G solvation = -30779.241925 eV Core-core repulsion = 26679.356604 eV Total energy + Delta-G solvation = -4099.885321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.62032 -39.73696 -38.71048 -35.97123 -35.17662 -33.70721 -32.85479 -32.12909 -31.40504 -30.73750 -29.85407 -28.20159 -27.09432 -24.93966 -23.86713 -23.12842 -22.69207 -21.85683 -21.03449 -20.08644 -18.67636 -17.88054 -17.69338 -17.02863 -16.55119 -15.67781 -15.65412 -15.41809 -14.96445 -14.74667 -14.49616 -14.41815 -14.15315 -13.91227 -13.49477 -13.42253 -13.21033 -12.87293 -12.70995 -12.66192 -12.43499 -12.40227 -12.22776 -11.92657 -11.76475 -11.55538 -11.44173 -11.02852 -11.01881 -10.94273 -10.89165 -10.46260 -10.24162 -10.09927 -9.85740 -9.79325 -9.62251 -9.27706 -9.19649 -8.86491 -8.52726 -7.41159 -5.85137 -3.23755 1.43320 1.97115 2.08873 3.27843 3.29616 3.37403 3.42830 3.57919 3.93751 4.28224 4.49485 4.49597 4.55504 4.77762 4.79470 4.98369 5.03550 5.11495 5.19286 5.25192 5.30767 5.36057 5.45913 5.51072 5.57732 5.64646 5.65077 5.71199 5.77847 5.89201 5.96759 5.99563 6.01382 6.14425 6.19992 6.27588 6.30629 6.46549 6.51185 6.55957 6.64324 6.70385 6.89328 7.62005 7.85668 7.89650 8.21013 8.32551 8.52847 9.08281 9.80428 9.98393 11.32456 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.004035 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.313090 B = 6938.415883 C = 7632.147392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.144 5.144 4 N -0.297 5.297 5 C 0.058 3.942 6 C -0.066 4.066 7 C -0.040 4.040 8 C 0.604 3.396 9 O -0.538 6.538 10 N -0.686 5.686 11 C 0.118 3.882 12 C 0.195 3.805 13 N -0.738 5.738 14 C -0.241 4.241 15 H 0.093 0.907 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.876 3.124 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.276 1.276 22 C -0.155 4.155 23 C 0.066 3.934 24 O -0.391 6.391 25 C 0.069 3.931 26 C -0.151 4.151 27 N -0.246 5.246 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.406 0.594 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 -1.057 -8.844 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.047 5.047 4 N -0.138 5.138 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.203 4.203 8 C 0.387 3.613 9 O -0.414 6.414 10 N -0.335 5.335 11 C -0.008 4.008 12 C 0.104 3.896 13 N -0.381 5.381 14 C -0.371 4.371 15 H 0.111 0.889 16 C -0.184 4.184 17 N -0.575 5.575 18 Si 0.707 3.293 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.202 1.202 22 C -0.194 4.194 23 C -0.011 4.011 24 O -0.310 6.310 25 C -0.008 4.008 26 C -0.191 4.191 27 N -0.094 5.094 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.718 -1.440 -9.024 17.325 hybrid contribution -0.091 -1.243 0.441 1.322 sum -14.809 -2.682 -8.583 17.326 Atomic orbital electron populations 1.22182 0.93022 1.03909 1.03721 1.22060 0.96066 0.74304 1.06143 1.48057 1.44149 1.13261 0.99213 1.73882 1.19213 1.05234 1.15446 1.23248 1.00756 0.93844 0.92761 1.20208 1.01898 0.93833 0.96556 1.23051 1.09154 0.93725 0.94395 1.16572 0.78148 0.84818 0.81794 1.90745 1.48306 1.26935 1.75424 1.45588 1.65272 1.18109 1.04550 1.21889 1.00967 0.87761 0.90141 1.19797 0.90240 0.88151 0.91441 1.42853 1.04849 1.06711 1.83737 1.18905 0.80692 1.01543 1.35926 0.88937 1.24647 0.95082 0.97784 1.00905 1.69688 1.06064 1.28429 1.53281 0.86699 0.79550 0.84176 0.78917 1.21215 1.21824 1.20248 1.22412 0.96780 1.02579 0.97591 1.22450 0.98123 0.90814 0.89749 1.87814 1.23257 1.54845 1.65118 1.22479 0.80688 1.01644 0.95940 1.22417 1.03030 0.97656 0.95967 1.74388 1.14896 1.04343 1.15728 0.91428 0.89523 0.91283 0.87209 0.87041 0.90115 0.90976 0.88588 0.75786 0.90777 0.92081 0.80564 0.93039 0.90643 0.91253 0.93018 0.89856 0.91593 0.89954 0.89715 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.15 0.38 -0.79 16 2 C 0.13 1.15 7.24 -4.05 -0.03 1.13 16 3 N -0.14 -1.97 3.94 -10.62 -0.04 -2.01 16 4 N -0.30 -4.30 12.01 33.92 0.41 -3.89 16 5 C 0.06 0.88 7.39 -81.88 -0.61 0.28 16 6 C -0.07 -0.82 10.00 36.01 0.36 -0.46 16 7 C -0.04 -0.68 7.21 -82.68 -0.60 -1.27 16 8 C 0.60 11.00 7.83 -12.35 -0.10 10.90 16 9 O -0.54 -10.57 15.20 5.32 0.08 -10.49 16 10 N -0.69 -12.06 5.13 -61.26 -0.31 -12.38 16 11 C 0.12 2.07 4.37 -4.04 -0.02 2.05 16 12 C 0.20 3.33 0.41 -131.63 -0.05 3.28 16 13 N -0.74 -15.13 3.38 -47.06 -0.16 -15.29 16 14 C -0.24 -6.08 9.15 -15.06 -0.14 -6.22 16 15 H 0.09 2.57 7.02 -52.49 -0.37 2.20 16 16 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 17 N -0.93 -27.88 13.97 55.49 0.78 -27.10 16 18 Si 0.88 20.84 27.67 -169.99 -4.70 16.14 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.11 6.62 56.52 0.37 -5.74 16 22 C -0.16 -2.25 4.80 -26.59 -0.13 -2.38 16 23 C 0.07 0.98 6.67 37.21 0.25 1.22 16 24 O -0.39 -6.48 10.77 -35.23 -0.38 -6.86 16 25 C 0.07 1.15 6.68 37.21 0.25 1.40 16 26 C -0.15 -2.52 4.78 -26.59 -0.13 -2.64 16 27 N -0.25 -3.92 11.84 33.42 0.40 -3.52 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.25 6.77 -51.92 -0.35 0.90 16 36 H 0.41 7.09 7.20 -40.82 -0.29 6.79 16 37 H 0.07 1.49 7.49 -51.93 -0.39 1.10 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.36 7.42 4.77 -40.82 -0.19 7.23 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.95 7.41 -51.93 -0.38 0.56 16 43 H 0.05 0.84 7.16 -51.93 -0.37 0.47 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.27 7.75 -51.93 -0.40 0.86 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.56 7.17 -51.93 -0.37 1.19 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -32.41 385.77 -6.14 -38.55 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -7.37 Total: 14.31 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.65 Total: 6.74 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 1.06 Total: -64.20 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.30 Total: -17.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.70 Total: 16.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.41 -6.14 -38.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569735863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.153 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds