Wall clock time and date at job start Tue Mar 31 2020 19:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46492 * 109.47644 * 2 1 4 4 N 1.28525 * 124.44424 * 270.31023 * 3 2 1 5 5 C 1.31127 * 109.05847 * 180.17337 * 4 3 2 6 6 C 1.50699 * 127.10840 * 179.82939 * 5 4 3 7 7 C 1.40921 * 105.77742 * 359.57828 * 5 4 3 8 8 C 1.47800 * 127.23558 * 180.26393 * 7 5 4 9 9 O 1.21557 * 120.00219 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99683 * 179.97438 * 8 7 5 11 11 C 1.46504 * 119.99693 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47015 * 176.04756 * 11 10 8 13 13 N 1.46502 * 109.54013 * 54.58264 * 12 11 10 14 14 C 1.36935 * 120.00330 * 62.70158 * 13 12 11 15 15 H 1.08002 * 119.99524 * 353.59283 * 14 13 12 16 16 C 1.38813 * 120.00099 * 173.58775 * 14 13 12 17 17 N 1.31613 * 119.99808 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99828 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47251 * 90.00217 * 18 16 14 20 20 H 1.48501 * 109.47029 * 210.00007 * 18 16 14 21 21 H 1.48502 * 109.47533 * 329.99990 * 18 16 14 22 22 C 1.53173 * 109.54271 * 294.40420 * 12 11 10 23 23 C 1.53103 * 109.15426 * 183.24060 * 22 12 11 24 24 O 1.42896 * 109.49054 * 57.47631 * 23 22 12 25 25 C 1.42903 * 114.09798 * 298.88814 * 24 23 22 26 26 C 1.53098 * 109.41536 * 61.15709 * 25 24 23 27 27 N 1.28590 * 124.44715 * 89.99664 * 3 2 1 28 28 H 1.09003 * 109.47134 * 59.99981 * 1 2 3 29 29 H 1.08997 * 109.47870 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 300.00685 * 1 2 3 31 31 H 1.09001 * 109.47066 * 239.99315 * 2 1 3 32 32 H 1.08998 * 109.47011 * 120.00488 * 2 1 3 33 33 H 1.09001 * 109.47443 * 269.69068 * 6 5 4 34 34 H 1.09001 * 109.47273 * 29.69303 * 6 5 4 35 35 H 1.09010 * 109.47213 * 149.69332 * 6 5 4 36 36 H 0.96994 * 120.00460 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46999 * 296.04973 * 11 10 8 38 38 H 1.09002 * 109.47041 * 56.04662 * 11 10 8 39 39 H 0.97002 * 119.99519 * 242.70035 * 13 12 11 40 40 H 0.97001 * 119.99689 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.52475 * 303.05726 * 22 12 11 42 42 H 1.09003 * 109.52656 * 63.24724 * 22 12 11 43 43 H 1.09000 * 109.40809 * 297.49375 * 23 22 12 44 44 H 1.09006 * 109.49260 * 177.50839 * 23 22 12 45 45 H 1.09001 * 109.48230 * 301.17302 * 25 24 23 46 46 H 1.09002 * 109.49305 * 181.14225 * 25 24 23 47 47 H 1.08996 * 109.52264 * 182.49140 * 26 25 24 48 48 H 1.08990 * 109.57401 * 62.32716 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2553 2.0684 -1.0599 5 6 2.6822 3.2584 -0.7120 6 6 3.0808 4.3855 -1.6296 7 6 2.6855 3.2675 0.6971 8 6 3.0797 4.3827 1.5834 9 8 3.4526 5.4363 1.1054 10 7 3.0258 4.2313 2.9216 11 6 3.4171 5.3366 3.8001 12 6 3.1712 4.9412 5.2575 13 7 3.8628 3.6826 5.5472 14 6 5.2278 3.6160 5.4618 15 1 5.7868 4.4585 5.0820 16 6 5.8931 2.4658 5.8635 17 7 7.2052 2.4020 5.7820 18 14 4.9261 1.0086 6.5199 19 1 4.5642 0.1080 5.3960 20 1 5.7561 0.2657 7.5020 21 1 3.6894 1.4936 7.1836 22 6 1.6680 4.7662 5.4943 23 6 1.4258 4.4504 6.9727 24 8 1.9686 5.4977 7.7791 25 6 3.3793 5.6741 7.6343 26 6 3.7000 6.0413 6.1830 27 7 2.2608 2.0669 1.0604 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 4.1458 4.3146 -1.8508 34 1 2.5118 4.3177 -2.5568 35 1 2.8732 5.3395 -1.1447 36 1 2.7279 3.3908 3.3030 37 1 4.4748 5.5574 3.6570 38 1 2.8257 6.2197 3.5584 39 1 3.3536 2.8964 5.7995 40 1 7.6700 1.5982 6.0623 41 1 1.1480 5.6869 5.2298 42 1 1.2953 3.9469 4.8796 43 1 1.9111 3.5079 7.2260 44 1 0.3544 4.3685 7.1563 45 1 3.8903 4.7476 7.8962 46 1 3.7156 6.4738 8.2943 47 1 4.7791 6.1329 6.0604 48 1 3.2231 6.9887 5.9322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569735863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:22 Heat of formation + Delta-G solvation = 12.081816 kcal Electronic energy + Delta-G solvation = -30780.305159 eV Core-core repulsion = 26679.356604 eV Total energy + Delta-G solvation = -4100.948555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.74959 -41.14713 -40.10239 -37.41592 -36.08658 -35.27605 -34.26622 -33.67087 -32.36042 -32.01553 -31.64564 -29.29004 -28.32941 -26.11204 -25.59567 -24.44234 -23.80161 -23.13159 -22.12687 -21.44994 -20.14472 -19.80921 -18.93852 -18.15429 -17.63379 -17.14102 -17.00003 -16.75772 -16.35318 -16.28178 -15.83895 -15.59443 -15.45943 -15.01019 -14.89969 -14.75878 -14.32191 -14.24760 -14.16161 -13.82099 -13.72031 -13.44443 -13.24716 -13.05761 -12.98681 -12.89616 -12.71019 -12.59046 -12.37931 -12.21730 -12.16614 -12.07796 -11.75502 -11.48508 -11.40805 -11.21999 -11.19705 -10.98228 -10.39597 -10.33859 -9.95475 -9.31529 -7.97215 -5.31982 0.19679 0.80851 1.16858 1.36083 1.38786 1.45982 2.07048 2.22113 2.49763 2.82276 3.04244 3.32680 3.46004 3.63045 3.79395 3.82419 3.88211 3.88585 3.95597 4.09073 4.19542 4.20249 4.42062 4.42216 4.56588 4.59934 4.67858 4.70033 4.73731 4.74733 4.77529 4.79919 4.85569 4.96016 5.00502 5.05948 5.11960 5.16660 5.25821 5.27173 5.29062 5.46423 5.56040 5.84449 6.25044 6.33994 6.46399 7.01729 7.10641 7.13151 7.82944 8.02642 9.24069 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.004035 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.313090 B = 6938.415883 C = 7632.147392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 N -0.132 5.132 4 N -0.297 5.297 5 C 0.049 3.951 6 C -0.064 4.064 7 C -0.070 4.070 8 C 0.602 3.398 9 O -0.559 6.559 10 N -0.685 5.685 11 C 0.125 3.875 12 C 0.191 3.809 13 N -0.734 5.734 14 C -0.202 4.202 15 H 0.058 0.942 16 C -0.059 4.059 17 N -0.984 5.984 18 Si 0.940 3.060 19 H -0.283 1.283 20 H -0.306 1.306 21 H -0.247 1.247 22 C -0.147 4.147 23 C 0.061 3.939 24 O -0.394 6.394 25 C 0.074 3.926 26 C -0.148 4.148 27 N -0.255 5.255 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.408 0.592 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.365 0.635 40 H 0.253 0.747 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.117 0.883 45 H 0.037 0.963 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.057 -1.872 -9.219 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.001 4.001 3 N -0.037 5.037 4 N -0.138 5.138 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.231 4.231 8 C 0.386 3.614 9 O -0.437 6.437 10 N -0.334 5.334 11 C 0.000 4.000 12 C 0.101 3.899 13 N -0.378 5.378 14 C -0.333 4.333 15 H 0.076 0.924 16 C -0.250 4.250 17 N -0.635 5.635 18 Si 0.769 3.231 19 H -0.210 1.210 20 H -0.234 1.234 21 H -0.172 1.172 22 C -0.185 4.185 23 C -0.015 4.015 24 O -0.313 6.313 25 C -0.003 4.003 26 C -0.188 4.188 27 N -0.104 5.104 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.199 0.801 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.135 0.865 45 H 0.055 0.945 46 H 0.119 0.881 47 H 0.076 0.924 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.159 -2.223 -9.402 20.569 hybrid contribution 0.904 -0.965 0.472 1.404 sum -17.255 -3.188 -8.930 19.689 Atomic orbital electron populations 1.22153 0.91391 1.05662 1.02748 1.22650 0.97411 0.72162 1.07848 1.48690 1.42298 1.14223 0.98481 1.73890 1.19284 1.05032 1.15640 1.23654 1.00542 0.94708 0.92536 1.20260 1.02486 0.92457 0.97003 1.22903 1.11260 0.93980 0.94973 1.16793 0.77632 0.85033 0.81974 1.90721 1.49255 1.27916 1.75786 1.45568 1.65200 1.18080 1.04530 1.21780 0.99199 0.88652 0.90401 1.20028 0.92217 0.86659 0.90975 1.42769 1.03080 1.08446 1.83459 1.18735 0.82581 0.99596 1.32420 0.92388 1.25346 0.95841 1.01008 1.02811 1.69878 1.08210 1.29098 1.56310 0.85638 0.78930 0.80509 0.78036 1.20951 1.23395 1.17168 1.22378 0.94051 1.04192 0.97861 1.22638 0.99795 0.89662 0.89417 1.87824 1.22525 1.55331 1.65587 1.22386 0.81021 1.00871 0.95991 1.22373 1.01556 0.98678 0.96149 1.74327 1.15117 1.04257 1.16714 0.92018 0.86378 0.92536 0.84920 0.86003 0.89734 0.88508 0.89541 0.75609 0.94277 0.90193 0.80091 0.93823 0.88603 0.89983 0.94463 0.86543 0.94501 0.88132 0.92370 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.24 71.98 0.74 -1.05 16 2 C 0.12 1.72 7.24 86.38 0.63 2.34 16 3 N -0.13 -3.39 3.94 -187.52 -0.74 -4.13 16 4 N -0.30 -8.15 12.01 -46.59 -0.56 -8.71 16 5 C 0.05 1.45 7.39 43.32 0.32 1.77 16 6 C -0.06 -1.52 10.00 71.24 0.71 -0.81 16 7 C -0.07 -2.34 7.21 42.24 0.30 -2.04 16 8 C 0.60 21.99 7.83 86.77 0.68 22.67 16 9 O -0.56 -22.25 15.20 -3.90 -0.06 -22.31 16 10 N -0.68 -23.86 5.13 -466.00 -2.39 -26.24 16 11 C 0.13 4.36 4.37 86.38 0.38 4.74 16 12 C 0.19 6.32 0.41 3.72 0.00 6.32 16 13 N -0.73 -29.74 3.38 -302.80 -1.02 -30.76 16 14 C -0.20 -10.48 9.15 84.03 0.77 -9.71 16 15 H 0.06 3.40 7.02 -2.91 -0.02 3.38 16 16 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 17 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 18 Si 0.94 43.43 27.67 68.60 1.90 45.33 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.25 -10.08 6.62 99.48 0.66 -9.42 16 22 C -0.15 -3.79 4.80 30.69 0.15 -3.64 16 23 C 0.06 1.62 6.67 72.02 0.48 2.10 16 24 O -0.39 -11.90 10.77 -148.98 -1.60 -13.51 16 25 C 0.07 2.38 6.68 72.01 0.48 2.86 16 26 C -0.15 -4.81 4.78 30.69 0.15 -4.66 16 27 N -0.25 -7.85 11.84 -48.17 -0.57 -8.42 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 29 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 2.24 6.77 -2.38 -0.02 2.23 16 36 H 0.41 13.86 7.20 -92.71 -0.67 13.19 16 37 H 0.04 1.63 7.49 -2.39 -0.02 1.62 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.37 14.39 4.77 -92.71 -0.44 13.94 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 1.96 7.41 -2.39 -0.02 1.94 16 43 H 0.04 1.10 7.16 -2.39 -0.02 1.08 16 44 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 46 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.06 2.20 7.17 -2.39 -0.02 2.19 16 48 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.83 385.77 1.34 -71.50 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -0.17 Total: 40.53 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 6.25 Total: 18.06 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -4.98 Total: -139.60 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.66 Total: -35.81 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.90 Total: 45.33 kcal Total: -72.83 1.34 -71.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569735863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.578 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds