Wall clock time and date at job start Tue Mar 31 2020 19:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46954 * 2 1 4 4 N 1.28513 * 124.44399 * 90.02130 * 3 2 1 5 5 C 1.31135 * 109.05974 * 179.97438 * 4 3 2 6 6 C 1.50702 * 127.11156 * 180.02562 * 5 4 3 7 7 C 1.40926 * 105.77478 * 359.97438 * 5 4 3 8 8 C 1.47807 * 127.23519 * 179.97438 * 7 5 4 9 9 O 1.21557 * 119.99964 * 0.02562 * 8 7 5 10 10 N 1.34769 * 119.99873 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99873 * 174.69418 * 10 8 7 12 12 C 1.53006 * 109.54649 * 304.10525 * 11 10 8 13 13 N 1.46499 * 109.47249 * 305.58605 * 12 11 10 14 14 C 1.36930 * 119.99862 * 175.02093 * 13 12 11 15 15 H 1.07998 * 120.00219 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99764 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00330 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46999 * 60.00180 * 18 16 14 20 20 H 1.48496 * 109.47393 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47314 * 300.00533 * 18 16 14 22 22 C 1.53182 * 109.54545 * 183.93146 * 11 10 8 23 23 C 1.53283 * 109.06207 * 297.03324 * 22 11 10 24 24 O 1.42899 * 109.46023 * 302.44187 * 23 22 11 25 25 C 1.42908 * 114.09985 * 61.15797 * 24 23 22 26 26 C 1.53095 * 109.41437 * 298.84522 * 25 24 23 27 27 N 1.28589 * 124.44436 * 269.72160 * 3 2 1 28 28 H 1.09002 * 109.47120 * 60.00504 * 1 2 3 29 29 H 1.08993 * 109.47393 * 300.00218 * 1 2 3 30 30 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47120 * 119.99496 * 2 1 3 32 32 H 1.09005 * 109.47374 * 240.00127 * 2 1 3 33 33 H 1.08996 * 109.47380 * 89.97457 * 6 5 4 34 34 H 1.09007 * 109.46797 * 209.97609 * 6 5 4 35 35 H 1.09003 * 109.47086 * 329.96763 * 6 5 4 36 36 H 0.97004 * 120.00215 * 354.70343 * 10 8 7 37 37 H 1.09006 * 109.46405 * 65.58323 * 12 11 10 38 38 H 1.08996 * 109.46890 * 185.57928 * 12 11 10 39 39 H 0.97004 * 119.99891 * 355.02236 * 13 12 11 40 40 H 0.96994 * 120.00677 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.52145 * 57.01908 * 22 11 10 42 42 H 1.09000 * 109.52486 * 177.21013 * 22 11 10 43 43 H 1.09000 * 109.45976 * 182.44847 * 23 22 11 44 44 H 1.08999 * 109.47039 * 62.44209 * 23 22 11 45 45 H 1.08996 * 109.48360 * 178.86142 * 25 24 23 46 46 H 1.09003 * 109.48629 * 58.83244 * 25 24 23 47 47 H 1.09004 * 109.52148 * 297.69981 * 26 25 24 48 48 H 1.08996 * 109.57303 * 177.53772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2609 2.0664 1.0598 5 6 2.6827 3.2584 0.7119 6 6 3.0822 4.3852 1.6294 7 6 2.6863 3.2673 -0.6973 8 6 3.0806 4.3825 -1.5836 9 8 3.4532 5.4362 -1.1056 10 7 3.0280 4.2307 -2.9217 11 6 3.3064 5.3700 -3.7996 12 6 2.3713 6.5285 -3.4468 13 7 0.9818 6.0668 -3.4953 14 6 -0.0319 6.9054 -3.1158 15 1 0.1928 7.9074 -2.7811 16 6 -1.3486 6.4681 -3.1622 17 7 -1.6225 5.2473 -3.5706 18 14 -2.7316 7.6124 -2.6452 19 1 -2.7240 8.8200 -3.5093 20 1 -4.0330 6.9110 -2.7854 21 1 -2.5372 8.0157 -1.2293 22 6 3.0849 4.9589 -5.2585 23 6 4.0804 3.8519 -5.6233 24 8 5.4130 4.3185 -5.4031 25 6 5.6904 4.6733 -4.0469 26 6 4.7616 5.8126 -3.6188 27 7 2.2655 2.0653 -1.0604 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 4.1471 4.3136 1.8505 34 1 2.8750 5.3393 1.1446 35 1 2.5133 4.3178 2.5567 36 1 2.8057 3.3671 -3.3035 37 1 2.6002 6.8874 -2.4433 38 1 2.5103 7.3385 -4.1628 39 1 0.7800 5.1670 -3.7962 40 1 -2.5424 4.9415 -3.6027 41 1 2.0663 4.5910 -5.3827 42 1 3.2440 5.8198 -5.9078 43 1 3.9577 3.5847 -6.6729 44 1 3.8944 2.9765 -5.0012 45 1 6.7273 4.9979 -3.9608 46 1 5.5254 3.8088 -3.4038 47 1 4.9545 6.6909 -4.2350 48 1 4.9408 6.0559 -2.5715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570310364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:18 Heat of formation + Delta-G solvation = 38.722014 kcal Electronic energy + Delta-G solvation = -31344.154912 eV Core-core repulsion = 27244.361563 eV Total energy + Delta-G solvation = -4099.793349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.50282 -40.37534 -38.21780 -35.77479 -35.01235 -33.68955 -32.95604 -31.71002 -31.04867 -30.94607 -30.33494 -27.90048 -26.54295 -25.09018 -23.70810 -23.36305 -22.66340 -21.45535 -20.93256 -20.72315 -18.87319 -17.77214 -17.20360 -16.99446 -16.44593 -15.92026 -15.84459 -15.37897 -14.79788 -14.69083 -14.38019 -14.21160 -14.08653 -13.79010 -13.46933 -13.29566 -13.06762 -12.81315 -12.70289 -12.55091 -12.36864 -12.33485 -12.20930 -11.79503 -11.61457 -11.50384 -11.32727 -11.13402 -10.88649 -10.84873 -10.77550 -10.49113 -10.30892 -10.11456 -10.07129 -9.68888 -9.56479 -9.32966 -9.06400 -8.76978 -8.53449 -6.82934 -5.71241 -2.97529 1.54055 2.08392 2.20286 3.33840 3.47231 3.50888 3.52513 3.69696 3.98175 4.01479 4.62817 4.63758 4.64726 4.83644 4.86855 4.90972 5.04229 5.10981 5.12692 5.18517 5.31832 5.37714 5.49005 5.49784 5.62141 5.64040 5.77769 5.79085 5.81762 5.89642 5.91224 5.98062 6.08159 6.10167 6.13383 6.26221 6.34001 6.43890 6.50257 6.57916 6.67475 6.89218 7.07389 7.29817 7.76142 7.84109 8.29768 8.47677 8.56893 9.59271 10.17061 10.52647 11.51650 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006795 B = 0.005786 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4119.729588 B = 4837.887258 C = 7188.354434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 N -0.144 5.144 4 N -0.298 5.298 5 C 0.060 3.940 6 C -0.067 4.067 7 C -0.037 4.037 8 C 0.623 3.377 9 O -0.519 6.519 10 N -0.698 5.698 11 C 0.174 3.826 12 C 0.141 3.859 13 N -0.724 5.724 14 C -0.229 4.229 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.287 1.287 22 C -0.154 4.154 23 C 0.060 3.940 24 O -0.386 6.386 25 C 0.066 3.934 26 C -0.163 4.163 27 N -0.247 5.247 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.382 0.618 40 H 0.253 0.747 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 -11.078 3.892 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.018 3.982 3 N -0.047 5.047 4 N -0.139 5.139 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.200 4.200 8 C 0.406 3.594 9 O -0.393 6.393 10 N -0.349 5.349 11 C 0.089 3.911 12 C 0.013 3.987 13 N -0.369 5.369 14 C -0.360 4.360 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.585 5.585 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.214 1.214 22 C -0.192 4.192 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.011 4.011 26 C -0.202 4.202 27 N -0.095 5.095 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.215 0.785 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.189 -11.432 4.120 17.212 hybrid contribution -1.304 0.533 0.207 1.424 sum 10.885 -10.899 4.327 16.000 Atomic orbital electron populations 1.22202 0.92826 1.03790 1.04357 1.22024 0.96352 0.74238 1.05612 1.48021 1.44084 1.13318 0.99231 1.73872 1.19021 1.05530 1.15439 1.23227 1.00729 0.93644 0.92797 1.20212 1.01326 0.94180 0.96828 1.23007 1.09030 0.93618 0.94389 1.16389 0.77035 0.84617 0.81366 1.90697 1.47011 1.26375 1.75248 1.45740 1.70558 1.13571 1.05071 1.20638 0.94627 0.87147 0.88721 1.21096 0.85104 0.92704 0.99775 1.42204 0.99441 1.15491 1.79720 1.19171 0.86209 0.95168 1.35501 0.91383 1.24669 0.97110 0.96637 1.02647 1.69637 1.18299 1.16519 1.54024 0.86304 0.81833 0.79904 0.78409 1.21319 1.21855 1.21416 1.22472 1.01010 1.00613 0.95144 1.22639 0.82190 0.95360 1.01458 1.87889 1.29780 1.85252 1.27523 1.22515 0.99003 0.96634 0.82972 1.22566 0.94185 0.99105 1.04361 1.74312 1.14577 1.04808 1.15808 0.90805 0.91354 0.89640 0.87433 0.87313 0.90443 0.88321 0.90958 0.76460 0.93130 0.96032 0.78452 0.93767 0.89126 0.89367 0.88779 0.93523 0.89241 0.93538 0.90237 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.14 1.26 7.24 -4.04 -0.03 1.23 16 3 N -0.14 -2.08 3.94 -10.61 -0.04 -2.12 16 4 N -0.30 -4.66 12.01 33.92 0.41 -4.25 16 5 C 0.06 0.99 7.39 -81.87 -0.61 0.39 16 6 C -0.07 -0.93 10.00 36.01 0.36 -0.57 16 7 C -0.04 -0.66 7.21 -82.68 -0.60 -1.26 16 8 C 0.62 11.43 7.24 -12.35 -0.09 11.34 16 9 O -0.52 -10.22 11.50 5.32 0.06 -10.16 16 10 N -0.70 -11.66 3.75 -48.38 -0.18 -11.84 16 11 C 0.17 2.89 0.32 -131.63 -0.04 2.85 16 12 C 0.14 2.97 4.79 -4.04 -0.02 2.95 16 13 N -0.72 -18.33 5.21 -59.91 -0.31 -18.65 16 14 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 17 N -0.94 -28.35 13.06 55.49 0.72 -27.62 16 18 Si 0.90 23.03 29.55 -169.99 -5.02 18.01 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 C -0.15 -2.31 4.84 -26.49 -0.13 -2.44 16 23 C 0.06 0.77 6.67 37.30 0.25 1.02 16 24 O -0.39 -5.33 10.77 -35.23 -0.38 -5.71 16 25 C 0.07 0.85 6.68 37.21 0.25 1.10 16 26 C -0.16 -2.37 4.82 -26.59 -0.13 -2.50 16 27 N -0.25 -4.05 11.85 33.42 0.40 -3.66 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.53 6.77 -51.93 -0.35 1.18 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 6.28 7.18 -40.82 -0.29 5.99 16 37 H 0.05 1.17 6.25 -51.93 -0.32 0.84 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.38 10.01 6.51 -40.82 -0.27 9.75 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.09 1.51 7.22 -51.92 -0.37 1.13 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.56 7.01 -51.93 -0.36 0.20 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.10 1.49 6.25 -51.93 -0.32 1.17 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -34.37 384.67 -6.52 -40.89 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.32 Total: 13.66 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.65 Total: 5.65 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: 0.99 Total: -68.13 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.32 Total: -15.87 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.37 -6.52 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570310364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.611 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds