Wall clock time and date at job start Tue Mar 31 2020 19:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46954 * 2 1 4 4 N 1.28513 * 124.44399 * 90.02130 * 3 2 1 5 5 C 1.31135 * 109.05974 * 179.97438 * 4 3 2 6 6 C 1.50702 * 127.11156 * 180.02562 * 5 4 3 7 7 C 1.40926 * 105.77478 * 359.97438 * 5 4 3 8 8 C 1.47807 * 127.23519 * 179.97438 * 7 5 4 9 9 O 1.21557 * 119.99964 * 0.02562 * 8 7 5 10 10 N 1.34769 * 119.99873 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99873 * 174.69418 * 10 8 7 12 12 C 1.53006 * 109.54649 * 304.10525 * 11 10 8 13 13 N 1.46499 * 109.47249 * 305.58605 * 12 11 10 14 14 C 1.36930 * 119.99862 * 175.02093 * 13 12 11 15 15 H 1.07998 * 120.00219 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99764 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00330 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46999 * 60.00180 * 18 16 14 20 20 H 1.48496 * 109.47393 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47314 * 300.00533 * 18 16 14 22 22 C 1.53182 * 109.54545 * 183.93146 * 11 10 8 23 23 C 1.53283 * 109.06207 * 297.03324 * 22 11 10 24 24 O 1.42899 * 109.46023 * 302.44187 * 23 22 11 25 25 C 1.42908 * 114.09985 * 61.15797 * 24 23 22 26 26 C 1.53095 * 109.41437 * 298.84522 * 25 24 23 27 27 N 1.28589 * 124.44436 * 269.72160 * 3 2 1 28 28 H 1.09002 * 109.47120 * 60.00504 * 1 2 3 29 29 H 1.08993 * 109.47393 * 300.00218 * 1 2 3 30 30 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47120 * 119.99496 * 2 1 3 32 32 H 1.09005 * 109.47374 * 240.00127 * 2 1 3 33 33 H 1.08996 * 109.47380 * 89.97457 * 6 5 4 34 34 H 1.09007 * 109.46797 * 209.97609 * 6 5 4 35 35 H 1.09003 * 109.47086 * 329.96763 * 6 5 4 36 36 H 0.97004 * 120.00215 * 354.70343 * 10 8 7 37 37 H 1.09006 * 109.46405 * 65.58323 * 12 11 10 38 38 H 1.08996 * 109.46890 * 185.57928 * 12 11 10 39 39 H 0.97004 * 119.99891 * 355.02236 * 13 12 11 40 40 H 0.96994 * 120.00677 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.52145 * 57.01908 * 22 11 10 42 42 H 1.09000 * 109.52486 * 177.21013 * 22 11 10 43 43 H 1.09000 * 109.45976 * 182.44847 * 23 22 11 44 44 H 1.08999 * 109.47039 * 62.44209 * 23 22 11 45 45 H 1.08996 * 109.48360 * 178.86142 * 25 24 23 46 46 H 1.09003 * 109.48629 * 58.83244 * 25 24 23 47 47 H 1.09004 * 109.52148 * 297.69981 * 26 25 24 48 48 H 1.08996 * 109.57303 * 177.53772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2609 2.0664 1.0598 5 6 2.6827 3.2584 0.7119 6 6 3.0822 4.3852 1.6294 7 6 2.6863 3.2673 -0.6973 8 6 3.0806 4.3825 -1.5836 9 8 3.4532 5.4362 -1.1056 10 7 3.0280 4.2307 -2.9217 11 6 3.3064 5.3700 -3.7996 12 6 2.3713 6.5285 -3.4468 13 7 0.9818 6.0668 -3.4953 14 6 -0.0319 6.9054 -3.1158 15 1 0.1928 7.9074 -2.7811 16 6 -1.3486 6.4681 -3.1622 17 7 -1.6225 5.2473 -3.5706 18 14 -2.7316 7.6124 -2.6452 19 1 -2.7240 8.8200 -3.5093 20 1 -4.0330 6.9110 -2.7854 21 1 -2.5372 8.0157 -1.2293 22 6 3.0849 4.9589 -5.2585 23 6 4.0804 3.8519 -5.6233 24 8 5.4130 4.3185 -5.4031 25 6 5.6904 4.6733 -4.0469 26 6 4.7616 5.8126 -3.6188 27 7 2.2655 2.0653 -1.0604 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 4.1471 4.3136 1.8505 34 1 2.8750 5.3393 1.1446 35 1 2.5133 4.3178 2.5567 36 1 2.8057 3.3671 -3.3035 37 1 2.6002 6.8874 -2.4433 38 1 2.5103 7.3385 -4.1628 39 1 0.7800 5.1670 -3.7962 40 1 -2.5424 4.9415 -3.6027 41 1 2.0663 4.5910 -5.3827 42 1 3.2440 5.8198 -5.9078 43 1 3.9577 3.5847 -6.6729 44 1 3.8944 2.9765 -5.0012 45 1 6.7273 4.9979 -3.9608 46 1 5.5254 3.8088 -3.4038 47 1 4.9545 6.6909 -4.2350 48 1 4.9408 6.0559 -2.5715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570310364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:14 Heat of formation + Delta-G solvation = 13.174217 kcal Electronic energy + Delta-G solvation = -31345.262748 eV Core-core repulsion = 27244.361563 eV Total energy + Delta-G solvation = -4100.901185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.70332 -41.69860 -39.47671 -37.25158 -36.04436 -35.50061 -34.26135 -33.09431 -32.43759 -32.07506 -31.93138 -28.99921 -28.19528 -26.32013 -25.37128 -24.63236 -23.73495 -23.01713 -22.09508 -21.98483 -20.26217 -19.26063 -19.01069 -18.14645 -17.59062 -17.15150 -17.01177 -16.85381 -16.30692 -16.03621 -15.74685 -15.46242 -15.34803 -15.17900 -14.89043 -14.84422 -14.30540 -14.20385 -14.00973 -13.78117 -13.58718 -13.43345 -13.23810 -13.08506 -13.02415 -12.83477 -12.75932 -12.57153 -12.38057 -12.29989 -12.16431 -12.06374 -11.96691 -11.67800 -11.41340 -11.35383 -11.04047 -10.79054 -10.55187 -10.25495 -9.90817 -8.95360 -7.95333 -5.21273 0.25637 0.83890 1.21513 1.42252 1.45097 1.50667 1.99828 2.32318 2.53812 2.83803 2.96365 3.37483 3.54551 3.66141 3.77438 3.86294 3.86646 3.88814 3.95474 4.01830 4.20171 4.25329 4.28235 4.43022 4.46040 4.58343 4.64623 4.66770 4.74536 4.75251 4.77892 4.80525 4.86954 4.89286 4.95355 5.04882 5.12243 5.13028 5.15675 5.21620 5.29544 5.46616 5.59016 5.60805 6.23910 6.26224 6.47586 7.05094 7.19201 7.34010 8.08834 8.35682 9.27197 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006795 B = 0.005786 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4119.729588 B = 4837.887258 C = 7188.354434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.133 5.133 4 N -0.299 5.299 5 C 0.044 3.956 6 C -0.062 4.062 7 C -0.069 4.069 8 C 0.617 3.383 9 O -0.540 6.540 10 N -0.691 5.691 11 C 0.179 3.821 12 C 0.143 3.857 13 N -0.728 5.728 14 C -0.239 4.239 15 H 0.066 0.934 16 C -0.070 4.070 17 N -0.963 5.963 18 Si 0.965 3.035 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.286 1.286 22 C -0.148 4.148 23 C 0.065 3.935 24 O -0.390 6.390 25 C 0.071 3.929 26 C -0.156 4.156 27 N -0.252 5.252 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.030 0.970 38 H 0.024 0.976 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.045 0.955 47 H 0.086 0.914 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -12.342 3.906 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.005 3.995 3 N -0.038 5.038 4 N -0.141 5.141 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.230 4.230 8 C 0.401 3.599 9 O -0.416 6.416 10 N -0.342 5.342 11 C 0.093 3.907 12 C 0.015 3.985 13 N -0.371 5.371 14 C -0.371 4.371 15 H 0.084 0.916 16 C -0.262 4.262 17 N -0.614 5.614 18 Si 0.795 3.205 19 H -0.202 1.202 20 H -0.219 1.219 21 H -0.212 1.212 22 C -0.186 4.186 23 C -0.011 4.011 24 O -0.308 6.308 25 C -0.006 4.006 26 C -0.195 4.195 27 N -0.101 5.101 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.241 0.759 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.208 0.792 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.022 -12.684 4.124 18.640 hybrid contribution -1.569 0.865 0.235 1.807 sum 11.453 -11.819 4.358 17.025 Atomic orbital electron populations 1.22181 0.92818 1.05535 1.02050 1.22630 0.96298 0.72150 1.08389 1.48677 1.42274 1.14355 0.98482 1.73860 1.19093 1.05370 1.15801 1.23622 1.00870 0.94549 0.92807 1.20224 1.02879 0.92309 0.96683 1.23008 1.10923 0.94129 0.94972 1.16605 0.76796 0.84686 0.81839 1.90676 1.48049 1.27202 1.75673 1.45688 1.70116 1.13731 1.04703 1.20573 0.94826 0.85663 0.89646 1.21152 0.84040 0.94697 0.98594 1.42269 1.00647 1.14847 1.79368 1.19491 0.87322 0.95482 1.34829 0.91644 1.25404 0.99262 0.98172 1.03406 1.69780 1.18330 1.17970 1.55302 0.85332 0.78819 0.78350 0.78015 1.20246 1.21914 1.21225 1.22404 1.00796 1.01586 0.93813 1.22684 0.81083 0.94365 1.02980 1.87897 1.29960 1.85204 1.27785 1.22545 0.99674 0.95751 0.82623 1.22497 0.92904 1.00212 1.03861 1.74259 1.14606 1.04652 1.16630 0.93726 0.92882 0.85891 0.84389 0.84888 0.88410 0.90478 0.89418 0.75902 0.95211 0.95834 0.79175 0.94229 0.91003 0.89235 0.86552 0.92748 0.86917 0.93653 0.89511 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.24 71.98 0.74 -2.13 16 2 C 0.12 1.99 7.24 86.38 0.63 2.61 16 3 N -0.13 -3.71 3.94 -187.49 -0.74 -4.45 16 4 N -0.30 -9.14 12.01 -46.58 -0.56 -9.70 16 5 C 0.04 1.47 7.39 43.32 0.32 1.79 16 6 C -0.06 -1.73 10.00 71.24 0.71 -1.02 16 7 C -0.07 -2.48 7.21 42.25 0.30 -2.18 16 8 C 0.62 23.21 7.24 86.78 0.63 23.84 16 9 O -0.54 -22.00 11.50 -3.90 -0.04 -22.05 16 10 N -0.69 -23.40 3.75 -425.26 -1.60 -24.99 16 11 C 0.18 5.94 0.32 3.73 0.00 5.94 16 12 C 0.14 6.14 4.79 86.38 0.41 6.55 16 13 N -0.73 -37.77 5.21 -343.44 -1.79 -39.56 16 14 C -0.24 -13.90 9.99 84.04 0.84 -13.06 16 15 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 17 N -0.96 -59.23 13.06 21.65 0.28 -58.95 16 18 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 22 C -0.15 -4.35 4.84 30.75 0.15 -4.20 16 23 C 0.07 1.55 6.67 72.08 0.48 2.03 16 24 O -0.39 -9.85 10.77 -148.98 -1.60 -11.45 16 25 C 0.07 1.70 6.68 72.01 0.48 2.18 16 26 C -0.16 -4.43 4.82 30.69 0.15 -4.28 16 27 N -0.25 -8.23 11.85 -48.16 -0.57 -8.80 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.48 6.77 -2.38 -0.02 2.47 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 12.79 7.18 -92.71 -0.67 12.13 16 37 H 0.03 1.42 6.25 -2.38 -0.01 1.41 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.38 20.23 6.51 -92.71 -0.60 19.63 16 40 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.07 2.41 7.22 -2.38 -0.02 2.39 16 42 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.05 1.22 7.01 -2.39 -0.02 1.20 16 45 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 1.11 7.75 -2.39 -0.02 1.10 16 47 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 48 H 0.08 2.61 6.25 -2.39 -0.01 2.60 16 Total: -1.00 -74.93 384.67 1.44 -73.49 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.27 Total: 42.24 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.31 Total: 14.42 kcal Atomic # 7 Polarization: -141.47 SS G_CDS: -4.97 Total: -146.45 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.65 Total: -33.50 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -74.93 1.44 -73.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570310364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.663 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds