Wall clock time and date at job start Tue Mar 31 2020 20:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47652 * 2 1 4 4 C 1.42896 * 114.00423 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47346 * 179.97438 * 4 3 2 6 6 N 1.31791 * 119.08508 * 269.97329 * 5 4 3 7 7 C 1.32546 * 121.01047 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.39967 * 180.02562 * 7 6 5 9 9 C 1.38122 * 119.20127 * 0.02562 * 7 6 5 10 10 C 1.39625 * 118.33029 * 359.97438 * 9 7 6 11 11 N 1.38536 * 120.52632 * 179.97438 * 10 9 7 12 12 N 1.40108 * 120.00139 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00451 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00115 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.46681 * 319.99358 * 15 13 12 17 17 N 1.46898 * 109.46837 * 199.99429 * 15 13 12 18 18 C 1.53001 * 109.47017 * 79.99404 * 15 13 12 19 19 C 1.53004 * 109.46827 * 185.00017 * 18 15 13 20 20 C 1.50706 * 109.46693 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00038 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99557 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00021 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00258 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47296 * 89.99934 * 24 22 20 26 26 H 1.48501 * 109.47348 * 209.99995 * 24 22 20 27 27 H 1.48507 * 109.46906 * 330.00127 * 24 22 20 28 28 N 1.31753 * 119.08573 * 90.00303 * 5 4 3 29 29 H 1.09004 * 109.46757 * 300.00506 * 1 2 3 30 30 H 1.09005 * 109.46964 * 59.99727 * 1 2 3 31 31 H 1.08998 * 109.47471 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47013 * 239.99762 * 2 1 3 33 33 H 1.09005 * 109.46964 * 120.00272 * 2 1 3 34 34 H 1.09003 * 109.47485 * 59.99298 * 4 3 2 35 35 H 1.09007 * 109.46795 * 299.99844 * 4 3 2 36 36 H 1.08993 * 109.47284 * 270.00200 * 8 7 6 37 37 H 1.09004 * 109.46867 * 30.00433 * 8 7 6 38 38 H 1.09001 * 109.47216 * 149.99576 * 8 7 6 39 39 H 1.07995 * 120.83076 * 180.27328 * 9 7 6 40 40 H 0.97002 * 120.00560 * 359.97438 * 11 10 9 41 41 H 0.97002 * 119.99302 * 359.97438 * 12 11 10 42 42 H 1.00898 * 111.00230 * 299.99598 * 17 15 13 43 43 H 1.00899 * 110.99658 * 63.95863 * 17 15 13 44 44 H 1.08998 * 109.47125 * 305.00326 * 18 15 13 45 45 H 1.09004 * 109.46989 * 65.00181 * 18 15 13 46 46 H 1.08994 * 109.47043 * 300.00097 * 19 18 15 47 47 H 1.08988 * 109.46877 * 60.00408 * 19 18 15 48 48 H 0.96999 * 120.00373 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9160 -0.0012 6 7 3.9849 3.5345 -1.1531 7 6 4.3270 4.8142 -1.1982 8 6 4.5118 5.5080 -2.5232 9 6 4.5121 5.5043 -0.0161 10 6 4.3290 4.8192 1.1867 11 7 4.5033 5.4668 2.3989 12 7 4.3172 4.7686 3.5993 13 6 4.4862 5.3987 4.7786 14 8 4.7999 6.5700 4.8008 15 6 4.2855 4.6478 6.0697 16 1 3.4244 3.9863 5.9751 17 7 4.0514 5.6034 7.1606 18 6 5.5342 3.8188 6.3770 19 6 5.2842 2.9615 7.6194 20 6 6.5144 2.1454 7.9224 21 1 7.3873 2.2302 7.2922 22 6 6.5254 1.2907 9.0042 23 7 7.5987 0.5781 9.2684 24 14 5.0152 1.1436 10.0938 25 1 4.1303 0.0716 9.5712 26 1 5.4345 0.8083 11.4783 27 1 4.2803 2.4341 10.0979 28 7 3.9852 3.5351 1.1500 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8334 0.9765 -0.8907 35 1 3.8340 0.9763 0.8892 36 1 5.5491 5.4098 -2.8431 37 1 3.8576 5.0521 -3.2663 38 1 4.2622 6.5639 -2.4184 39 1 4.7868 6.5487 -0.0221 40 1 4.7549 6.4035 2.4167 41 1 4.0660 3.8319 3.5815 42 1 4.8362 6.2283 7.2685 43 1 3.1965 6.1185 7.0128 44 1 5.7590 3.1724 5.5286 45 1 6.3771 4.4855 6.5592 46 1 5.0594 3.6079 8.4676 47 1 4.4414 2.2949 7.4371 48 1 7.6066 -0.0229 10.0296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578127493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:12 Heat of formation + Delta-G solvation = -7.900650 kcal Electronic energy + Delta-G solvation = -28522.264222 eV Core-core repulsion = 24420.449162 eV Total energy + Delta-G solvation = -4101.815059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39704 -40.06450 -38.26912 -36.93339 -35.43093 -34.46172 -33.39892 -32.81009 -31.56954 -30.58689 -30.33484 -28.65208 -27.51250 -26.60710 -23.81822 -23.09658 -23.05890 -22.19673 -20.91368 -20.09030 -18.81513 -18.10604 -17.10702 -16.94925 -16.74582 -16.36729 -16.08935 -15.76375 -15.72385 -15.46111 -15.15631 -14.84870 -14.54922 -14.16485 -13.82086 -13.63455 -13.54654 -13.49073 -12.97936 -12.72409 -12.65396 -12.59782 -12.48876 -12.29768 -11.72743 -11.67985 -11.50665 -11.12954 -11.01015 -10.92278 -10.62489 -10.47603 -9.98554 -9.92671 -9.87148 -9.83462 -9.64300 -9.55106 -9.14293 -8.65509 -8.48265 -8.02464 -6.00969 -3.99002 0.62495 1.01470 1.62514 2.45821 2.98696 3.35124 3.39816 3.43009 3.50333 3.64850 3.96753 4.16404 4.38870 4.50016 4.61966 4.73429 4.77353 4.83028 4.87346 4.95253 5.02863 5.10464 5.11470 5.18411 5.20591 5.24980 5.34725 5.41555 5.48959 5.54187 5.56002 5.63539 5.83621 5.93847 6.21726 6.32373 6.42098 6.64835 6.80830 6.83345 6.98057 7.19162 7.32555 7.40662 7.52999 7.55427 7.83656 7.92917 8.13688 8.55718 9.03438 9.61685 11.12476 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.002688 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.230040 B =10413.186495 C =12289.806019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.381 6.381 4 C 0.134 3.866 5 C 0.375 3.625 6 N -0.546 5.546 7 C 0.208 3.792 8 C -0.104 4.104 9 C -0.285 4.285 10 C 0.443 3.557 11 N -0.505 5.505 12 N -0.515 5.515 13 C 0.483 3.517 14 O -0.555 6.555 15 C 0.088 3.912 16 H 0.105 0.895 17 N -0.804 5.804 18 C -0.089 4.089 19 C -0.004 4.004 20 C -0.522 4.522 21 H 0.069 0.931 22 C 0.066 3.934 23 N -0.906 5.906 24 Si 0.879 3.121 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.260 1.260 28 N -0.568 5.568 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.443 0.557 41 H 0.436 0.564 42 H 0.352 0.648 43 H 0.338 0.662 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.010 0.990 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.756 6.537 -24.049 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.299 6.299 4 C 0.055 3.945 5 C 0.105 3.895 6 N -0.267 5.267 7 C 0.066 3.934 8 C -0.162 4.162 9 C -0.314 4.314 10 C 0.198 3.802 11 N -0.233 5.233 12 N -0.263 5.263 13 C 0.268 3.732 14 O -0.431 6.431 15 C -0.029 4.029 16 H 0.123 0.877 17 N -0.332 5.332 18 C -0.128 4.128 19 C -0.042 4.042 20 C -0.560 4.560 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.545 5.545 24 Si 0.707 3.293 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.184 1.184 28 N -0.295 5.295 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.164 0.836 40 H 0.288 0.712 41 H 0.278 0.722 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.889 5.769 -23.198 26.698 hybrid contribution -0.136 1.205 -0.098 1.216 sum -12.025 6.974 -23.296 27.128 Atomic orbital electron populations 1.21740 0.93568 1.02344 1.03181 1.22513 0.95688 0.83043 1.00553 1.87912 1.19253 1.27166 1.95577 1.20913 0.82779 0.88169 1.02594 1.22240 0.89187 0.95629 0.82455 1.68070 1.19013 1.10069 1.29544 1.21353 0.87744 0.89097 0.95229 1.20764 1.03657 0.99681 0.92059 1.21773 1.14924 1.03189 0.91518 1.18322 0.88308 0.88873 0.84648 1.43229 1.74124 1.11553 0.94381 1.45412 1.71409 1.13542 0.95897 1.23283 0.76119 0.88727 0.85031 1.90673 1.48540 1.16709 1.87207 1.21882 1.03067 0.94752 0.83246 0.87734 1.59069 1.08576 1.24156 1.41447 1.21539 0.92924 0.97232 1.01064 1.19491 0.96962 0.94493 0.93204 1.21158 0.99617 1.22740 1.12504 0.91304 1.25012 0.95990 0.95176 0.97303 1.69919 1.28439 1.27054 1.29096 0.86774 0.83619 0.79164 0.79786 1.20459 1.21611 1.18387 1.67562 1.22074 1.08170 1.31650 0.91754 0.91937 0.90888 0.93058 0.92755 0.90325 0.90190 0.89567 0.89793 0.90146 0.83647 0.71246 0.72153 0.83353 0.85023 0.91966 0.91964 0.94691 0.97159 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.38 -4.34 10.33 -35.23 -0.36 -4.70 16 4 C 0.13 1.40 6.37 36.00 0.23 1.63 16 5 C 0.38 4.72 7.27 -157.24 -1.14 3.58 16 6 N -0.55 -6.54 10.27 -7.07 -0.07 -6.62 16 7 C 0.21 2.06 6.82 -82.33 -0.56 1.50 16 8 C -0.10 -0.62 10.21 36.01 0.37 -0.25 16 9 C -0.28 -2.76 9.71 -39.11 -0.38 -3.14 16 10 C 0.44 5.32 7.64 -154.79 -1.18 4.14 16 11 N -0.51 -6.02 6.41 31.23 0.20 -5.82 16 12 N -0.51 -6.69 6.29 31.22 0.20 -6.50 16 13 C 0.48 7.00 7.18 -10.99 -0.08 6.93 16 14 O -0.56 -9.16 16.09 5.56 0.09 -9.07 16 15 C 0.09 1.32 3.15 -68.86 -0.22 1.10 16 16 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 17 N -0.80 -11.84 8.44 -5.66 -0.05 -11.89 16 18 C -0.09 -1.67 4.78 -26.73 -0.13 -1.79 16 19 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 20 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 21 H 0.07 2.09 7.99 -52.49 -0.42 1.68 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 23 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 24 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 28 N -0.57 -7.48 9.41 -9.97 -0.09 -7.57 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 39 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.44 4.79 8.02 -182.59 -1.46 3.32 16 41 H 0.44 5.47 7.99 -182.59 -1.46 4.01 16 42 H 0.35 5.27 8.58 -39.29 -0.34 4.94 16 43 H 0.34 4.22 9.06 -39.29 -0.36 3.86 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 47 H 0.01 0.23 7.57 -51.94 -0.39 -0.16 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -35.09 406.73 -10.73 -45.82 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -9.86 Total: 10.15 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.00 Total: 0.26 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: 0.96 Total: -65.64 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.27 Total: -13.77 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.09 -10.73 -45.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578127493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.919 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds