Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47652 * 2 1 4 4 C 1.42896 * 114.00423 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47346 * 179.97438 * 4 3 2 6 6 N 1.31791 * 119.08508 * 269.97329 * 5 4 3 7 7 C 1.32546 * 121.01047 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.39967 * 180.02562 * 7 6 5 9 9 C 1.38122 * 119.20127 * 0.02562 * 7 6 5 10 10 C 1.39625 * 118.33029 * 359.97438 * 9 7 6 11 11 N 1.38536 * 120.52632 * 179.97438 * 10 9 7 12 12 N 1.40108 * 120.00139 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00451 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00115 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.46681 * 319.99358 * 15 13 12 17 17 N 1.46898 * 109.46837 * 199.99429 * 15 13 12 18 18 C 1.53001 * 109.47017 * 79.99404 * 15 13 12 19 19 C 1.53004 * 109.46827 * 185.00017 * 18 15 13 20 20 C 1.50706 * 109.46693 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00038 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99557 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00021 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00258 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47296 * 89.99934 * 24 22 20 26 26 H 1.48501 * 109.47348 * 209.99995 * 24 22 20 27 27 H 1.48507 * 109.46906 * 330.00127 * 24 22 20 28 28 N 1.31753 * 119.08573 * 90.00303 * 5 4 3 29 29 H 1.09004 * 109.46757 * 300.00506 * 1 2 3 30 30 H 1.09005 * 109.46964 * 59.99727 * 1 2 3 31 31 H 1.08998 * 109.47471 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47013 * 239.99762 * 2 1 3 33 33 H 1.09005 * 109.46964 * 120.00272 * 2 1 3 34 34 H 1.09003 * 109.47485 * 59.99298 * 4 3 2 35 35 H 1.09007 * 109.46795 * 299.99844 * 4 3 2 36 36 H 1.08993 * 109.47284 * 270.00200 * 8 7 6 37 37 H 1.09004 * 109.46867 * 30.00433 * 8 7 6 38 38 H 1.09001 * 109.47216 * 149.99576 * 8 7 6 39 39 H 1.07995 * 120.83076 * 180.27328 * 9 7 6 40 40 H 0.97002 * 120.00560 * 359.97438 * 11 10 9 41 41 H 0.97002 * 119.99302 * 359.97438 * 12 11 10 42 42 H 1.00898 * 111.00230 * 299.99598 * 17 15 13 43 43 H 1.00899 * 110.99658 * 63.95863 * 17 15 13 44 44 H 1.08998 * 109.47125 * 305.00326 * 18 15 13 45 45 H 1.09004 * 109.46989 * 65.00181 * 18 15 13 46 46 H 1.08994 * 109.47043 * 300.00097 * 19 18 15 47 47 H 1.08988 * 109.46877 * 60.00408 * 19 18 15 48 48 H 0.96999 * 120.00373 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9160 -0.0012 6 7 3.9849 3.5345 -1.1531 7 6 4.3270 4.8142 -1.1982 8 6 4.5118 5.5080 -2.5232 9 6 4.5121 5.5043 -0.0161 10 6 4.3290 4.8192 1.1867 11 7 4.5033 5.4668 2.3989 12 7 4.3172 4.7686 3.5993 13 6 4.4862 5.3987 4.7786 14 8 4.7999 6.5700 4.8008 15 6 4.2855 4.6478 6.0697 16 1 3.4244 3.9863 5.9751 17 7 4.0514 5.6034 7.1606 18 6 5.5342 3.8188 6.3770 19 6 5.2842 2.9615 7.6194 20 6 6.5144 2.1454 7.9224 21 1 7.3873 2.2302 7.2922 22 6 6.5254 1.2907 9.0042 23 7 7.5987 0.5781 9.2684 24 14 5.0152 1.1436 10.0938 25 1 4.1303 0.0716 9.5712 26 1 5.4345 0.8083 11.4783 27 1 4.2803 2.4341 10.0979 28 7 3.9852 3.5351 1.1500 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8334 0.9765 -0.8907 35 1 3.8340 0.9763 0.8892 36 1 5.5491 5.4098 -2.8431 37 1 3.8576 5.0521 -3.2663 38 1 4.2622 6.5639 -2.4184 39 1 4.7868 6.5487 -0.0221 40 1 4.7549 6.4035 2.4167 41 1 4.0660 3.8319 3.5815 42 1 4.8362 6.2283 7.2685 43 1 3.1965 6.1185 7.0128 44 1 5.7590 3.1724 5.5286 45 1 6.3771 4.4855 6.5592 46 1 5.0594 3.6079 8.4676 47 1 4.4414 2.2949 7.4371 48 1 7.6066 -0.0229 10.0296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578127493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = -34.681077 kcal Electronic energy + Delta-G solvation = -28523.425508 eV Core-core repulsion = 24420.449162 eV Total energy + Delta-G solvation = -4102.976346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.24778 -41.19709 -39.03376 -37.93200 -36.83937 -35.24002 -34.81641 -34.31408 -32.32178 -32.24599 -31.24768 -29.35800 -28.46834 -28.01179 -25.32909 -23.98845 -23.68710 -23.05601 -22.35966 -21.51503 -19.77158 -19.27525 -18.71468 -17.89629 -17.82306 -17.39843 -16.99801 -16.80088 -16.50706 -16.39550 -16.26072 -15.97760 -15.92023 -15.61210 -15.06447 -14.70339 -14.47991 -14.23492 -14.17962 -14.05134 -13.67885 -13.50113 -13.29420 -13.14123 -13.05619 -12.81499 -12.61467 -12.31994 -12.17790 -12.10298 -11.80538 -11.76476 -11.61012 -11.39595 -11.39200 -11.21281 -10.70727 -10.68264 -10.64825 -10.43222 -9.81922 -8.97281 -8.24454 -6.27942 -0.19016 0.16441 0.65658 1.30634 1.41360 1.44562 1.58355 2.20445 2.42429 2.51602 2.85188 3.12376 3.18907 3.30675 3.46417 3.60034 3.78157 3.99334 4.05207 4.16109 4.19471 4.20775 4.23129 4.37825 4.42779 4.51896 4.53535 4.67349 4.77472 4.77734 4.85602 4.86452 4.94225 5.04025 5.11803 5.24442 5.26356 5.48628 5.52738 5.65236 5.71168 5.74248 5.94731 6.11271 6.14413 6.32443 6.45179 6.46979 6.80826 6.96331 7.16667 7.36673 8.92513 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.002688 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.230040 B =10413.186495 C =12289.806019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.404 6.404 4 C 0.135 3.865 5 C 0.355 3.645 6 N -0.559 5.559 7 C 0.198 3.802 8 C -0.100 4.100 9 C -0.277 4.277 10 C 0.425 3.575 11 N -0.505 5.505 12 N -0.509 5.509 13 C 0.489 3.511 14 O -0.575 6.575 15 C 0.098 3.902 16 H 0.126 0.874 17 N -0.810 5.810 18 C -0.081 4.081 19 C 0.002 3.998 20 C -0.532 4.532 21 H 0.027 0.973 22 C 0.002 3.998 23 N -0.956 5.956 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.290 1.290 27 H -0.241 1.241 28 N -0.588 5.588 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.177 0.823 40 H 0.447 0.553 41 H 0.438 0.562 42 H 0.350 0.650 43 H 0.352 0.648 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.033 0.967 47 H 0.024 0.976 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 7.377 -25.105 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.323 6.323 4 C 0.056 3.944 5 C 0.085 3.915 6 N -0.280 5.280 7 C 0.056 3.944 8 C -0.157 4.157 9 C -0.305 4.305 10 C 0.181 3.819 11 N -0.235 5.235 12 N -0.255 5.255 13 C 0.274 3.726 14 O -0.453 6.453 15 C -0.019 4.019 16 H 0.144 0.856 17 N -0.340 5.340 18 C -0.119 4.119 19 C -0.035 4.035 20 C -0.570 4.570 21 H 0.045 0.955 22 C -0.194 4.194 23 N -0.597 5.597 24 Si 0.775 3.225 25 H -0.190 1.190 26 H -0.216 1.216 27 H -0.164 1.164 28 N -0.316 5.316 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.195 0.805 40 H 0.293 0.707 41 H 0.281 0.719 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.952 6.613 -24.301 28.791 hybrid contribution 0.583 0.936 0.090 1.106 sum -13.369 7.549 -24.211 28.669 Atomic orbital electron populations 1.21763 0.92964 1.03486 1.02433 1.22727 0.96223 0.81983 1.01533 1.87878 1.19665 1.29029 1.95748 1.20976 0.82618 0.87452 1.03311 1.22629 0.89705 0.96537 0.82595 1.68136 1.19290 1.11247 1.29334 1.22063 0.86775 0.88622 0.96979 1.20885 1.04483 1.00550 0.89809 1.22131 1.13446 1.04523 0.90428 1.18638 0.88980 0.89020 0.85234 1.43244 1.74792 1.11661 0.93827 1.45261 1.70394 1.13601 0.96285 1.22978 0.76083 0.88305 0.85250 1.90665 1.49643 1.17531 1.87473 1.21644 1.01715 0.94824 0.83731 0.85627 1.59052 1.09270 1.24397 1.41271 1.21305 0.94401 0.96943 0.99287 1.19378 0.94739 0.94431 0.94991 1.21559 1.00313 1.23321 1.11768 0.95459 1.26025 0.99487 0.94802 0.99119 1.70083 1.31138 1.28351 1.30158 0.85626 0.79417 0.80193 0.77233 1.19023 1.21637 1.16440 1.67530 1.22783 1.08995 1.32243 0.92849 0.92284 0.88803 0.91530 0.92280 0.88978 0.90014 0.88195 0.89835 0.87775 0.80537 0.70699 0.71909 0.83635 0.83400 0.91849 0.93592 0.94836 0.95801 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.40 -9.11 10.33 -148.98 -1.54 -10.65 16 4 C 0.13 2.80 6.37 71.23 0.45 3.25 16 5 C 0.36 8.85 7.27 138.76 1.01 9.86 16 6 N -0.56 -12.94 10.27 -176.28 -1.81 -14.75 16 7 C 0.20 3.57 6.82 42.42 0.29 3.86 16 8 C -0.10 -0.94 10.21 71.24 0.73 -0.21 16 9 C -0.28 -4.85 9.71 22.58 0.22 -4.63 16 10 C 0.42 9.78 7.64 133.17 1.02 10.80 16 11 N -0.51 -11.50 6.41 -55.09 -0.35 -11.86 16 12 N -0.51 -12.73 6.29 -173.54 -1.09 -13.82 16 13 C 0.49 13.57 7.18 87.66 0.63 14.20 16 14 O -0.58 -18.31 16.09 -3.02 -0.05 -18.36 16 15 C 0.10 2.78 3.15 44.17 0.14 2.92 16 16 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 17 N -0.81 -22.37 8.44 -171.80 -1.45 -23.82 16 18 C -0.08 -2.98 4.78 30.60 0.15 -2.84 16 19 C 0.00 0.10 3.93 29.85 0.12 0.21 16 20 C -0.53 -30.53 9.66 25.60 0.25 -30.29 16 21 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 22 C 0.00 0.10 5.47 84.66 0.46 0.57 16 23 N -0.96 -60.60 13.96 21.45 0.30 -60.30 16 24 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 28 N -0.59 -15.31 9.41 -185.45 -1.75 -17.06 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.10 0.49 8.09 -2.39 -0.02 0.47 16 39 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.45 9.10 8.02 -213.31 -1.71 7.39 16 41 H 0.44 10.63 7.99 -213.31 -1.70 8.93 16 42 H 0.35 10.06 8.58 -89.70 -0.77 9.29 16 43 H 0.35 8.01 9.06 -89.69 -0.81 7.20 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.03 1.53 6.81 -2.39 -0.02 1.51 16 47 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 48 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -77.05 406.73 -3.21 -80.26 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -4.04 Total: 36.44 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.68 Total: 7.70 kcal Atomic # 7 Polarization: -135.45 SS G_CDS: -6.15 Total: -141.60 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.59 Total: -29.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -77.05 -3.21 -80.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578127493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.576 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds