Wall clock time and date at job start Tue Mar 31 2020 21:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00490 * 2 1 4 4 C 1.50693 * 109.47517 * 179.97438 * 3 2 1 5 5 N 1.30825 * 126.44009 * 90.02315 * 4 3 2 6 6 N 1.28934 * 109.74031 * 180.11546 * 5 4 3 7 7 C 1.29726 * 109.42829 * 0.08590 * 6 5 4 8 8 N 1.34794 * 126.44427 * 269.99532 * 4 3 2 9 9 C 1.46223 * 128.59895 * 359.51953 * 8 4 3 10 10 C 1.53334 * 109.17552 * 161.68733 * 9 8 4 11 11 N 1.47081 * 109.24757 * 45.64878 * 10 9 8 12 12 C 1.34782 * 120.94601 * 116.47677 * 11 10 9 13 13 O 1.21277 * 119.99732 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00001 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.47084 * 320.00270 * 14 12 11 16 16 N 1.46900 * 109.47122 * 200.00203 * 14 12 11 17 17 C 1.53005 * 109.46991 * 79.99854 * 14 12 11 18 18 C 1.52998 * 109.46956 * 184.99950 * 17 14 12 19 19 C 1.53001 * 109.47279 * 180.02562 * 18 17 14 20 20 C 1.50691 * 109.47123 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00746 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99954 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47371 * 89.99880 * 24 22 20 26 26 H 1.48500 * 109.46605 * 209.99738 * 24 22 20 27 27 H 1.48498 * 109.46842 * 329.99361 * 24 22 20 28 28 C 1.47518 * 118.10605 * 296.45135 * 11 10 9 29 29 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47052 * 300.00672 * 1 2 3 31 31 H 1.08999 * 109.47243 * 60.00082 * 1 2 3 32 32 H 1.08993 * 109.47325 * 59.99538 * 3 2 1 33 33 H 1.09005 * 109.46899 * 300.00051 * 3 2 1 34 34 H 1.09005 * 109.51777 * 281.59714 * 9 8 4 35 35 H 1.09000 * 109.52383 * 41.71470 * 9 8 4 36 36 H 1.09005 * 109.50730 * 165.57680 * 10 9 8 37 37 H 1.09000 * 109.51019 * 285.67261 * 10 9 8 38 38 H 1.00900 * 110.99679 * 176.04915 * 16 14 12 39 39 H 1.00899 * 110.99858 * 299.99872 * 16 14 12 40 40 H 1.08993 * 109.47103 * 305.00044 * 17 14 12 41 41 H 1.08993 * 109.46809 * 65.00206 * 17 14 12 42 42 H 1.09001 * 109.47523 * 300.00222 * 18 17 14 43 43 H 1.09003 * 109.47119 * 59.99901 * 18 17 14 44 44 H 1.09001 * 109.46929 * 300.00469 * 19 18 17 45 45 H 1.09003 * 109.46524 * 59.99574 * 19 18 17 46 46 H 0.97002 * 120.00005 * 179.97438 * 23 22 20 47 47 H 1.08993 * 109.96169 * 283.81309 * 28 11 10 48 48 H 1.09006 * 109.95646 * 162.53027 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2876 1.1252 -1.0515 6 7 5.5184 1.0252 -0.6805 7 6 5.5791 1.0165 0.6153 8 7 4.3103 1.1234 1.0853 9 6 3.9343 1.1631 2.4978 10 6 5.0893 0.6115 3.3421 11 7 6.3541 1.2014 2.8780 12 6 7.0889 1.9904 3.6868 13 8 6.7099 2.2223 4.8153 14 6 8.3820 2.5833 3.1894 15 1 8.9156 1.8429 2.5933 16 7 9.2116 2.9798 4.3350 17 6 8.0817 3.8114 2.3277 18 6 9.3833 4.3395 1.7213 19 6 9.0832 5.5680 0.8601 20 6 10.3651 6.0878 0.2624 21 1 11.3004 5.5914 0.4751 22 6 10.3441 7.1973 -0.5560 23 7 9.2052 7.8014 -0.8154 24 14 11.9331 7.8412 -1.2975 25 1 12.1687 7.1857 -2.6090 26 1 11.8300 9.3101 -1.4897 27 1 13.0638 7.5398 -0.3832 28 6 6.7958 0.9046 1.5021 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.7281 2.1926 2.7910 35 1 3.0439 0.5544 2.6550 36 1 4.9301 0.8692 4.3893 37 1 5.1321 -0.4725 3.2364 38 1 10.1106 3.3210 4.0295 39 1 8.7385 3.6661 4.9036 40 1 7.3943 3.5350 1.5282 41 1 7.6279 4.5863 2.9453 42 1 10.0707 4.6159 2.5208 43 1 9.8372 3.5645 1.1037 44 1 8.3956 5.2921 0.0606 45 1 8.6295 6.3429 1.4782 46 1 9.1904 8.5822 -1.3909 47 1 7.2014 -0.1058 1.4513 48 1 7.5511 1.6259 1.1901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579107667.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:14 Heat of formation + Delta-G solvation = 3.848162 kcal Electronic energy + Delta-G solvation = -29797.897340 eV Core-core repulsion = 25696.591747 eV Total energy + Delta-G solvation = -4101.305593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.58521 -40.40365 -38.35898 -37.27270 -36.18136 -34.75366 -33.40124 -32.05944 -31.30598 -30.98381 -28.60567 -27.91691 -26.84321 -25.87391 -25.71238 -24.11127 -22.44487 -21.66923 -20.98113 -20.27449 -18.97871 -17.94574 -17.49038 -17.37207 -16.64573 -16.41144 -16.31089 -16.22453 -15.72012 -15.46664 -15.09242 -14.80966 -14.53792 -14.42732 -14.01132 -13.99614 -13.44641 -13.28880 -13.12992 -12.96047 -12.74619 -12.51161 -12.32516 -12.03632 -11.98746 -11.88764 -11.64798 -11.29331 -10.85137 -10.79371 -10.65677 -10.58316 -10.43385 -10.27325 -10.02613 -9.82012 -9.51022 -9.44081 -9.21585 -9.16167 -8.61505 -8.37815 -6.02584 -4.05720 1.36735 1.92374 2.32333 2.46100 2.57342 3.31140 3.33425 3.37448 3.39990 3.76682 3.88107 4.02043 4.17284 4.35895 4.40365 4.43799 4.57676 4.68260 4.70846 4.84432 4.84792 4.90857 4.95470 5.04887 5.06101 5.15727 5.18635 5.20226 5.33471 5.34274 5.55505 5.63703 5.76117 5.83676 5.87366 6.15261 6.43686 6.49090 6.52768 6.66005 6.79905 6.97529 7.12077 7.48118 7.61325 7.73181 7.85690 7.95705 8.37154 8.47753 9.01172 9.58957 11.08689 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.002917 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.414263 B = 9596.095051 C =11489.867070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.153 3.847 4 C 0.176 3.824 5 N -0.269 5.269 6 N -0.270 5.270 7 C 0.170 3.830 8 N -0.458 5.458 9 C 0.087 3.913 10 C 0.100 3.900 11 N -0.626 5.626 12 C 0.537 3.463 13 O -0.522 6.522 14 C 0.074 3.926 15 H 0.104 0.896 16 N -0.828 5.828 17 C -0.150 4.150 18 C -0.108 4.108 19 C 0.023 3.977 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.274 1.274 28 C 0.194 3.806 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.355 0.645 39 H 0.349 0.651 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.261 0.739 47 H 0.108 0.892 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 -17.415 8.392 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.074 3.926 4 C -0.091 4.091 5 N -0.112 5.112 6 N -0.111 5.111 7 C -0.098 4.098 8 N -0.150 5.150 9 C -0.037 4.037 10 C -0.023 4.023 11 N -0.362 5.362 12 C 0.326 3.674 13 O -0.396 6.396 14 C -0.042 4.042 15 H 0.122 0.878 16 N -0.361 5.361 17 C -0.189 4.189 18 C -0.146 4.146 19 C -0.014 4.014 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 C 0.069 3.931 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.070 0.930 47 H 0.126 0.874 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.111 -18.087 7.761 25.435 hybrid contribution -0.022 1.697 0.240 1.714 sum -16.133 -16.390 8.001 24.350 Atomic orbital electron populations 1.22817 0.79740 1.03386 1.00515 1.87955 1.20494 1.26337 1.95554 1.20481 0.83141 0.86008 1.02996 1.24083 0.95604 1.06300 0.83073 1.74538 0.96128 1.17141 1.23347 1.74162 1.11976 1.17658 1.07265 1.24811 0.87072 1.05050 0.92903 1.45835 1.07028 1.53681 1.08415 1.22494 1.00067 1.04497 0.76672 1.21856 0.81694 0.98376 1.00392 1.48237 1.23352 1.50939 1.13707 1.20850 0.85490 0.76429 0.84601 1.90667 1.71284 1.58816 1.18839 1.21513 0.91423 0.98311 0.92912 0.87799 1.58710 1.07062 1.50165 1.20164 1.22480 1.01250 0.96055 0.99143 1.21659 0.93692 1.00137 0.99100 1.19066 0.97080 0.91135 0.94151 1.21213 0.93726 1.12087 1.29016 0.92631 1.25034 0.96173 0.96774 0.96467 1.69961 1.25135 1.20880 1.37405 0.86594 0.83748 0.78021 0.79654 1.20565 1.21247 1.19857 1.20409 0.90733 1.04809 0.77121 0.89066 0.93711 0.93307 0.91172 0.89095 0.88619 0.87316 0.86066 0.89605 0.82978 0.83690 0.91664 0.91620 0.93176 0.92773 0.96587 0.96839 0.92962 0.87408 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.49 10.69 -35.23 -0.38 -3.86 16 3 C 0.15 1.31 6.33 36.00 0.23 1.54 16 4 C 0.18 2.20 7.69 -155.37 -1.19 1.01 16 5 N -0.27 -4.34 12.23 32.71 0.40 -3.94 16 6 N -0.27 -4.39 12.21 32.78 0.40 -3.99 16 7 C 0.17 2.20 7.88 -155.31 -1.22 0.98 16 8 N -0.46 -5.12 3.11 -110.82 -0.34 -5.46 16 9 C 0.09 0.64 6.87 -4.02 -0.03 0.61 16 10 C 0.10 0.77 6.43 -3.55 -0.02 0.75 16 11 N -0.63 -6.40 2.97 -173.40 -0.52 -6.91 16 12 C 0.54 6.86 6.96 -10.99 -0.08 6.78 16 13 O -0.52 -7.99 15.68 5.56 0.09 -7.90 16 14 C 0.07 0.93 2.35 -68.86 -0.16 0.77 16 15 H 0.10 1.16 7.04 -51.93 -0.37 0.79 16 16 N -0.83 -10.62 8.94 -5.65 -0.05 -10.67 16 17 C -0.15 -2.29 4.50 -26.73 -0.12 -2.41 16 18 C -0.11 -2.01 4.92 -26.73 -0.13 -2.14 16 19 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 20 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 24 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.19 1.98 6.19 -4.50 -0.03 1.95 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.41 8.01 -51.93 -0.42 0.00 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.12 0.94 7.01 -51.93 -0.36 0.57 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.35 4.29 7.55 -39.29 -0.30 3.99 16 39 H 0.35 4.64 8.58 -39.29 -0.34 4.30 16 40 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.89 6.87 -51.93 -0.36 0.53 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.13 1.38 4.88 -51.93 -0.25 1.12 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -36.85 391.11 -8.34 -45.19 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.36 Total: 3.12 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.20 Total: -1.80 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.63 Total: -57.26 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.29 Total: -11.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.85 -8.34 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579107667.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.036 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds