Wall clock time and date at job start Tue Mar 31 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00490 * 2 1 4 4 C 1.50693 * 109.47517 * 179.97438 * 3 2 1 5 5 N 1.30825 * 126.44009 * 90.02315 * 4 3 2 6 6 N 1.28934 * 109.74031 * 180.11546 * 5 4 3 7 7 C 1.29726 * 109.42829 * 0.08590 * 6 5 4 8 8 N 1.34794 * 126.44427 * 269.99532 * 4 3 2 9 9 C 1.46223 * 128.59895 * 359.51953 * 8 4 3 10 10 C 1.53334 * 109.17552 * 161.68733 * 9 8 4 11 11 N 1.47081 * 109.24757 * 45.64878 * 10 9 8 12 12 C 1.34782 * 120.94601 * 116.47677 * 11 10 9 13 13 O 1.21277 * 119.99732 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00001 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.47084 * 320.00270 * 14 12 11 16 16 N 1.46900 * 109.47122 * 200.00203 * 14 12 11 17 17 C 1.53005 * 109.46991 * 79.99854 * 14 12 11 18 18 C 1.52998 * 109.46956 * 184.99950 * 17 14 12 19 19 C 1.53001 * 109.47279 * 180.02562 * 18 17 14 20 20 C 1.50691 * 109.47123 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00746 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99954 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47371 * 89.99880 * 24 22 20 26 26 H 1.48500 * 109.46605 * 209.99738 * 24 22 20 27 27 H 1.48498 * 109.46842 * 329.99361 * 24 22 20 28 28 C 1.47518 * 118.10605 * 296.45135 * 11 10 9 29 29 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47052 * 300.00672 * 1 2 3 31 31 H 1.08999 * 109.47243 * 60.00082 * 1 2 3 32 32 H 1.08993 * 109.47325 * 59.99538 * 3 2 1 33 33 H 1.09005 * 109.46899 * 300.00051 * 3 2 1 34 34 H 1.09005 * 109.51777 * 281.59714 * 9 8 4 35 35 H 1.09000 * 109.52383 * 41.71470 * 9 8 4 36 36 H 1.09005 * 109.50730 * 165.57680 * 10 9 8 37 37 H 1.09000 * 109.51019 * 285.67261 * 10 9 8 38 38 H 1.00900 * 110.99679 * 176.04915 * 16 14 12 39 39 H 1.00899 * 110.99858 * 299.99872 * 16 14 12 40 40 H 1.08993 * 109.47103 * 305.00044 * 17 14 12 41 41 H 1.08993 * 109.46809 * 65.00206 * 17 14 12 42 42 H 1.09001 * 109.47523 * 300.00222 * 18 17 14 43 43 H 1.09003 * 109.47119 * 59.99901 * 18 17 14 44 44 H 1.09001 * 109.46929 * 300.00469 * 19 18 17 45 45 H 1.09003 * 109.46524 * 59.99574 * 19 18 17 46 46 H 0.97002 * 120.00005 * 179.97438 * 23 22 20 47 47 H 1.08993 * 109.96169 * 283.81309 * 28 11 10 48 48 H 1.09006 * 109.95646 * 162.53027 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2876 1.1252 -1.0515 6 7 5.5184 1.0252 -0.6805 7 6 5.5791 1.0165 0.6153 8 7 4.3103 1.1234 1.0853 9 6 3.9343 1.1631 2.4978 10 6 5.0893 0.6115 3.3421 11 7 6.3541 1.2014 2.8780 12 6 7.0889 1.9904 3.6868 13 8 6.7099 2.2223 4.8153 14 6 8.3820 2.5833 3.1894 15 1 8.9156 1.8429 2.5933 16 7 9.2116 2.9798 4.3350 17 6 8.0817 3.8114 2.3277 18 6 9.3833 4.3395 1.7213 19 6 9.0832 5.5680 0.8601 20 6 10.3651 6.0878 0.2624 21 1 11.3004 5.5914 0.4751 22 6 10.3441 7.1973 -0.5560 23 7 9.2052 7.8014 -0.8154 24 14 11.9331 7.8412 -1.2975 25 1 12.1687 7.1857 -2.6090 26 1 11.8300 9.3101 -1.4897 27 1 13.0638 7.5398 -0.3832 28 6 6.7958 0.9046 1.5021 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.7281 2.1926 2.7910 35 1 3.0439 0.5544 2.6550 36 1 4.9301 0.8692 4.3893 37 1 5.1321 -0.4725 3.2364 38 1 10.1106 3.3210 4.0295 39 1 8.7385 3.6661 4.9036 40 1 7.3943 3.5350 1.5282 41 1 7.6279 4.5863 2.9453 42 1 10.0707 4.6159 2.5208 43 1 9.8372 3.5645 1.1037 44 1 8.3956 5.2921 0.0606 45 1 8.6295 6.3429 1.4782 46 1 9.1904 8.5822 -1.3909 47 1 7.2014 -0.1058 1.4513 48 1 7.5511 1.6259 1.1901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579107667.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:12 Heat of formation + Delta-G solvation = -23.445003 kcal Electronic energy + Delta-G solvation = -29799.080860 eV Core-core repulsion = 25696.591747 eV Total energy + Delta-G solvation = -4102.489113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.52522 -41.37624 -38.94851 -38.19588 -37.45054 -35.67091 -35.26780 -33.03146 -32.94901 -31.74558 -29.58916 -29.11333 -27.68769 -27.05361 -26.48352 -25.28655 -23.89963 -22.54014 -22.02451 -21.77402 -19.89410 -18.83383 -18.49162 -18.36210 -18.17076 -17.33067 -17.13558 -16.88798 -16.57065 -16.45853 -16.37097 -16.18149 -15.90364 -15.35559 -15.06997 -14.97965 -14.40002 -14.35866 -14.24084 -13.92590 -13.73561 -13.55287 -13.43827 -13.35232 -13.03053 -12.93951 -12.62024 -12.59415 -12.44750 -12.42741 -12.40348 -11.62316 -11.53968 -11.46169 -11.30878 -11.26380 -10.88590 -10.81986 -10.57768 -10.46800 -10.09213 -9.72157 -8.21687 -6.33019 0.49183 1.11768 1.33334 1.39526 1.40880 1.51547 1.52934 1.67742 2.39768 2.65070 2.95857 3.12188 3.14168 3.23181 3.45099 3.62189 3.66990 3.82156 3.89747 3.94004 3.98949 4.08219 4.16276 4.26756 4.33088 4.42257 4.49765 4.51460 4.51970 4.57176 4.59038 4.69509 4.70522 4.88031 4.88844 4.94120 5.06354 5.13283 5.20628 5.50188 5.64483 5.69598 5.82946 5.87831 5.99323 6.10930 6.21561 6.46898 6.85274 6.89223 7.37052 7.48317 8.90208 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.002917 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.414263 B = 9596.095051 C =11489.867070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.154 3.846 4 C 0.181 3.819 5 N -0.321 5.321 6 N -0.318 5.318 7 C 0.168 3.832 8 N -0.456 5.456 9 C 0.084 3.916 10 C 0.098 3.902 11 N -0.619 5.619 12 C 0.539 3.461 13 O -0.549 6.549 14 C 0.081 3.919 15 H 0.126 0.874 16 N -0.827 5.827 17 C -0.135 4.135 18 C -0.094 4.094 19 C 0.025 3.975 20 C -0.539 4.539 21 H 0.066 0.934 22 C -0.004 4.004 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.259 1.259 28 C 0.196 3.804 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.359 0.641 39 H 0.347 0.653 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.065 0.935 44 H -0.017 1.017 45 H -0.016 1.016 46 H 0.262 0.738 47 H 0.139 0.861 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.197 -18.830 9.731 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.075 3.925 4 C -0.088 4.088 5 N -0.163 5.163 6 N -0.158 5.158 7 C -0.102 4.102 8 N -0.147 5.147 9 C -0.038 4.038 10 C -0.024 4.024 11 N -0.354 5.354 12 C 0.328 3.672 13 O -0.425 6.425 14 C -0.034 4.034 15 H 0.143 0.857 16 N -0.360 5.360 17 C -0.174 4.174 18 C -0.132 4.132 19 C -0.012 4.012 20 C -0.577 4.577 21 H 0.084 0.916 22 C -0.202 4.202 23 N -0.577 5.577 24 Si 0.789 3.211 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.182 1.182 28 C 0.071 3.929 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.126 0.874 38 H 0.175 0.825 39 H 0.160 0.840 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.002 0.998 45 H 0.003 0.997 46 H 0.071 0.929 47 H 0.156 0.844 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.005 -19.532 9.103 26.843 hybrid contribution -0.164 2.125 -0.168 2.138 sum -16.170 -17.407 8.936 25.383 Atomic orbital electron populations 1.23031 0.77745 1.04420 1.01753 1.87909 1.22623 1.26410 1.95804 1.20655 0.80796 0.86382 1.04646 1.24758 0.97110 1.04224 0.82701 1.74415 0.96688 1.19617 1.25573 1.74023 1.12690 1.19738 1.09301 1.25184 0.88473 1.04056 0.92473 1.46055 1.06251 1.52824 1.09567 1.22794 1.01153 1.05469 0.74380 1.22089 0.80361 0.99500 1.00438 1.48196 1.23909 1.50071 1.13243 1.20705 0.85482 0.76568 0.84440 1.90661 1.71881 1.59972 1.20006 1.21455 0.92108 0.97318 0.92565 0.85655 1.58738 1.07216 1.50077 1.19942 1.22254 0.99157 0.97036 0.99000 1.21435 0.95646 0.97529 0.98591 1.18980 0.95413 0.93137 0.93697 1.21723 0.94934 1.12214 1.28856 0.91556 1.26030 0.99817 0.97238 0.97094 1.70109 1.27693 1.21526 1.38399 0.85456 0.79504 0.77204 0.78971 1.19908 1.21045 1.18246 1.20569 0.89532 1.06322 0.76435 0.88192 0.91705 0.92829 0.88001 0.88923 0.88360 0.84050 0.85686 0.87393 0.82520 0.83997 0.92368 0.93051 0.91948 0.91607 0.99815 0.99743 0.92919 0.84362 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.74 10.69 -148.98 -1.59 -8.34 16 3 C 0.15 2.43 6.33 71.23 0.45 2.88 16 4 C 0.18 4.44 7.69 138.11 1.06 5.50 16 5 N -0.32 -10.68 12.23 -50.42 -0.62 -11.29 16 6 N -0.32 -10.64 12.21 -50.19 -0.61 -11.25 16 7 C 0.17 4.28 7.88 138.22 1.09 5.36 16 8 N -0.46 -9.64 3.11 -504.51 -1.57 -11.21 16 9 C 0.08 1.03 6.87 86.54 0.59 1.62 16 10 C 0.10 1.25 6.43 86.38 0.55 1.80 16 11 N -0.62 -11.39 2.97 -820.89 -2.44 -13.83 16 12 C 0.54 12.86 6.96 87.65 0.61 13.47 16 13 O -0.55 -15.98 15.68 -3.02 -0.05 -16.02 16 14 C 0.08 1.92 2.35 44.17 0.10 2.03 16 15 H 0.13 2.47 7.04 -2.39 -0.02 2.45 16 16 N -0.83 -19.89 8.94 -171.80 -1.54 -21.43 16 17 C -0.13 -4.10 4.50 30.60 0.14 -3.96 16 18 C -0.09 -3.48 4.92 30.59 0.15 -3.33 16 19 C 0.02 1.29 4.97 29.85 0.15 1.44 16 20 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 21 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 22 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 23 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 24 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 28 C 0.20 3.69 6.19 85.52 0.53 4.22 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.92 8.01 -2.39 -0.02 0.91 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.13 1.60 7.01 -2.38 -0.02 1.58 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.36 8.02 7.55 -89.69 -0.68 7.34 16 39 H 0.35 8.83 8.58 -89.69 -0.77 8.07 16 40 H 0.06 1.85 6.75 -2.39 -0.02 1.84 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 2.15 6.87 -2.39 -0.02 2.13 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.12 2.49 4.88 -2.38 -0.01 2.48 16 Total: -1.00 -82.97 391.11 0.82 -82.14 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.45 Total: 19.89 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.38 Total: 2.64 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -6.49 Total: -126.79 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.64 Total: -24.36 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -82.97 0.82 -82.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579107667.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.698 kcal (2) G-P(sol) polarization free energy of solvation -82.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds