Wall clock time and date at job start Tue Mar 31 2020 21:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35635 * 116.99946 * 2 1 4 4 N 1.32960 * 120.49970 * 0.20615 * 3 2 1 5 5 C 1.31749 * 120.96586 * 180.26997 * 4 3 2 6 6 N 1.31790 * 122.01889 * 359.77520 * 5 4 3 7 7 C 1.33024 * 120.88515 * 359.97438 * 6 5 4 8 8 N 1.38825 * 120.52911 * 180.02562 * 7 6 5 9 9 C 1.46896 * 110.99726 * 324.08211 * 8 7 6 10 10 C 1.46892 * 110.99769 * 88.03580 * 8 7 6 11 11 C 1.39376 * 120.49515 * 179.97438 * 3 2 1 12 12 N 1.40415 * 120.91090 * 0.02562 * 11 3 2 13 13 C 1.34780 * 119.99441 * 299.23357 * 12 11 3 14 14 O 1.21298 * 120.00152 * 353.51026 * 13 12 11 15 15 C 1.50703 * 119.99706 * 173.51567 * 13 12 11 16 16 H 1.09000 * 109.47507 * 39.99670 * 15 13 12 17 17 N 1.46897 * 109.46978 * 159.99827 * 15 13 12 18 18 C 1.53000 * 109.46798 * 279.99990 * 15 13 12 19 19 C 1.53007 * 109.46923 * 175.00223 * 18 15 13 20 20 C 1.53005 * 109.46813 * 179.97438 * 19 18 15 21 21 C 1.50693 * 109.46734 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00453 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00188 * 180.02562 * 21 20 19 24 24 N 1.31524 * 119.99944 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00632 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47212 * 59.99572 * 25 23 21 27 27 H 1.48494 * 109.47349 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46809 * 299.99832 * 25 23 21 29 29 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00639 * 1 2 3 31 31 H 1.08996 * 109.46549 * 60.00364 * 1 2 3 32 32 H 1.07995 * 118.99671 * 179.75477 * 5 4 3 33 33 H 1.09006 * 109.47337 * 63.95401 * 9 8 7 34 34 H 1.09002 * 109.47043 * 183.94809 * 9 8 7 35 35 H 1.08999 * 109.47711 * 303.95466 * 9 8 7 36 36 H 1.09001 * 109.47299 * 48.72687 * 10 8 7 37 37 H 1.09000 * 109.47241 * 168.72925 * 10 8 7 38 38 H 1.08999 * 109.47273 * 288.72528 * 10 8 7 39 39 H 0.96994 * 120.00201 * 119.23774 * 12 11 3 40 40 H 1.00902 * 111.00200 * 296.04311 * 17 15 13 41 41 H 1.00906 * 111.00108 * 60.00190 * 17 15 13 42 42 H 1.08991 * 109.47313 * 55.00014 * 18 15 13 43 43 H 1.08998 * 109.47015 * 294.99502 * 18 15 13 44 44 H 1.09005 * 109.46791 * 59.99874 * 19 18 15 45 45 H 1.08999 * 109.46968 * 299.99949 * 19 18 15 46 46 H 1.09000 * 109.46883 * 299.99659 * 20 19 18 47 47 H 1.08995 * 109.46772 * 60.00372 * 20 19 18 48 48 H 0.96995 * 120.00435 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3304 2.3299 0.0041 5 6 1.9189 3.5086 -0.0012 6 7 3.2308 3.6346 -0.0063 7 6 4.0196 2.5635 -0.0059 8 7 5.4006 2.7048 -0.0108 9 6 5.8086 3.8610 -0.8199 10 6 5.9240 2.8090 1.3578 11 6 3.4360 1.2935 0.0005 12 7 4.2294 0.1350 0.0005 13 6 4.1394 -0.7433 1.0189 14 8 3.4632 -0.4783 1.9904 15 6 4.8791 -2.0545 0.9506 16 1 5.8651 -1.8932 0.5149 17 7 5.0261 -2.6049 2.3046 18 6 4.0928 -3.0389 0.0825 19 6 4.9018 -4.3261 -0.0895 20 6 4.1152 -5.3108 -0.9571 21 6 4.9123 -6.5783 -1.1269 22 1 5.8826 -6.6724 -0.6622 23 6 4.4029 -7.6179 -1.8756 24 7 3.2210 -7.5036 -2.4412 25 14 5.3905 -9.1895 -2.0856 26 1 5.6438 -9.7967 -0.7543 27 1 4.6272 -10.1451 -2.9278 28 1 6.6856 -8.8763 -2.7413 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.3077 4.3989 -0.0016 33 1 5.4241 4.7751 -0.3673 34 1 6.8967 3.9076 -0.8644 35 1 5.4077 3.7585 -1.8283 36 1 5.5024 2.0115 1.9697 37 1 7.0100 2.7176 1.3395 38 1 5.6479 3.7754 1.7798 39 1 4.8422 -0.0331 -0.7322 40 1 5.5968 -2.0033 2.8795 41 1 4.1251 -2.7635 2.7303 42 1 3.9069 -2.5933 -0.8947 43 1 3.1422 -3.2688 0.5638 44 1 5.0877 -4.7717 0.8879 45 1 5.8524 -4.0962 -0.5707 46 1 3.1648 -5.5405 -0.4754 47 1 3.9290 -4.8654 -1.9343 48 1 2.8627 -8.2348 -2.9683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579328703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:06 Heat of formation + Delta-G solvation = -17.219230 kcal Electronic energy + Delta-G solvation = -29940.032941 eV Core-core repulsion = 25837.813798 eV Total energy + Delta-G solvation = -4102.219143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86654 -39.81953 -39.08484 -37.43081 -35.83230 -35.09002 -33.31636 -32.77338 -31.32717 -30.53641 -28.14417 -27.90778 -27.75767 -25.66501 -25.34144 -23.99957 -22.30212 -22.24968 -20.37303 -19.97654 -18.85442 -18.43082 -17.80753 -17.20659 -16.44790 -16.33830 -16.17707 -15.71687 -15.58082 -15.48373 -14.81461 -14.45773 -14.43932 -14.35360 -14.18096 -14.00344 -13.91279 -12.97351 -12.73029 -12.53836 -12.38440 -12.29741 -12.17064 -11.84501 -11.75788 -11.64526 -11.47599 -11.11273 -10.79066 -10.70763 -10.63244 -10.40180 -10.34617 -10.24588 -9.68898 -9.56912 -9.22542 -9.19722 -9.02677 -8.73889 -8.53977 -8.26953 -5.92987 -3.94529 0.47552 0.77768 2.44271 2.58508 2.93149 3.19012 3.37973 3.41418 3.41916 3.44895 3.77201 3.92257 4.45374 4.52424 4.64222 4.75197 4.80064 4.90302 4.99750 5.08957 5.11350 5.13051 5.19757 5.23699 5.36966 5.42427 5.42782 5.43533 5.50229 5.60193 5.98102 6.07623 6.16296 6.19522 6.48796 6.54642 6.61664 6.85627 6.90268 7.03990 7.07970 7.27411 7.31628 7.51106 7.69946 7.77445 7.93705 8.08152 8.09074 8.52168 9.13058 9.69017 11.18427 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002577 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.443126 B =10864.194346 C =11614.978026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.282 6.282 3 C 0.378 3.622 4 N -0.572 5.572 5 C 0.341 3.659 6 N -0.563 5.563 7 C 0.356 3.644 8 N -0.486 5.486 9 C 0.030 3.970 10 C 0.034 3.966 11 C 0.041 3.959 12 N -0.654 5.654 13 C 0.491 3.509 14 O -0.536 6.536 15 C 0.083 3.917 16 H 0.103 0.897 17 N -0.810 5.810 18 C -0.101 4.101 19 C -0.100 4.100 20 C 0.020 3.980 21 C -0.516 4.516 22 H 0.055 0.945 23 C 0.055 3.945 24 N -0.898 5.898 25 Si 0.891 3.109 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.202 0.798 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.416 0.584 40 H 0.337 0.663 41 H 0.350 0.650 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.013 0.987 47 H 0.012 0.988 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 26.316 5.236 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.184 6.184 3 C 0.190 3.810 4 N -0.304 5.304 5 C 0.052 3.948 6 N -0.286 5.286 7 C 0.119 3.881 8 N -0.208 5.208 9 C -0.117 4.117 10 C -0.112 4.112 11 C -0.060 4.060 12 N -0.304 5.304 13 C 0.278 3.722 14 O -0.411 6.411 15 C -0.033 4.033 16 H 0.120 0.880 17 N -0.338 5.338 18 C -0.139 4.139 19 C -0.137 4.137 20 C -0.017 4.017 21 C -0.555 4.555 22 H 0.073 0.927 23 C -0.146 4.146 24 N -0.538 5.538 25 Si 0.719 3.281 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.218 0.782 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.254 0.746 40 H 0.149 0.851 41 H 0.164 0.836 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.204 25.721 5.290 26.261 hybrid contribution 0.055 0.110 0.004 0.123 sum 0.259 25.831 5.294 26.369 Atomic orbital electron populations 1.23013 0.76226 1.03938 1.02447 1.86368 1.23566 1.22924 1.85580 1.20220 0.88292 0.85535 0.86996 1.68172 1.41261 0.98723 1.22229 1.24452 0.87754 0.93913 0.88728 1.68501 1.06966 1.33214 1.19962 1.20010 0.90572 0.87121 0.90376 1.59680 1.04001 1.42843 1.14231 1.22383 1.01211 0.90739 0.97409 1.22427 1.01258 1.01482 0.86072 1.17879 0.87994 0.88162 1.11999 1.43280 1.42494 1.19259 1.25369 1.22802 0.81550 0.86405 0.81477 1.90674 1.40956 1.77441 1.32009 1.21748 0.99705 0.88424 0.93387 0.87957 1.59050 1.21437 1.50528 1.02755 1.21635 0.98916 0.96018 0.97372 1.21544 0.97765 0.93278 1.01145 1.19106 0.95296 0.92989 0.94287 1.21251 1.03628 0.99757 1.30849 0.92711 1.25029 0.95021 0.98639 0.95865 1.69960 1.17187 1.32548 1.34071 0.86682 0.80102 0.83275 0.78075 1.20258 1.21413 1.20293 0.87792 0.92004 0.91922 0.78163 0.93057 0.90408 0.91159 0.91099 0.89643 0.93929 0.74625 0.85059 0.83555 0.91793 0.91900 0.91869 0.93644 0.96822 0.96963 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.41 101.05 1.05 1.47 16 2 O -0.28 -4.03 9.31 -22.24 -0.21 -4.24 16 3 C 0.38 5.16 7.08 -16.64 -0.12 5.04 16 4 N -0.57 -6.85 9.38 -14.59 -0.14 -6.98 16 5 C 0.34 3.37 12.27 -92.20 -1.13 2.24 16 6 N -0.56 -6.03 9.35 -13.70 -0.13 -6.16 16 7 C 0.36 4.02 5.60 -154.42 -0.86 3.16 16 8 N -0.49 -4.51 4.76 -188.65 -0.90 -5.41 16 9 C 0.03 0.22 9.09 60.06 0.55 0.76 16 10 C 0.03 0.28 9.62 60.06 0.58 0.86 16 11 C 0.04 0.53 5.72 -82.93 -0.47 0.05 16 12 N -0.65 -7.88 4.98 -9.40 -0.05 -7.93 16 13 C 0.49 6.78 6.38 -10.98 -0.07 6.71 16 14 O -0.54 -8.94 15.49 1.91 0.03 -8.91 16 15 C 0.08 1.13 3.15 -68.86 -0.22 0.91 16 16 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 17 N -0.81 -10.89 8.44 -5.65 -0.05 -10.94 16 18 C -0.10 -1.68 4.84 -26.73 -0.13 -1.81 16 19 C -0.10 -2.02 5.04 -26.73 -0.13 -2.16 16 20 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 21 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 22 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 23 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 25 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 32 H 0.20 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.05 0.39 7.76 -51.93 -0.40 -0.01 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 39 H 0.42 4.22 8.83 -40.82 -0.36 3.86 16 40 H 0.34 3.89 9.06 -39.29 -0.36 3.54 16 41 H 0.35 4.96 8.58 -39.29 -0.34 4.63 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -34.70 404.48 -8.87 -43.57 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.73 Total: 6.59 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.51 Total: 4.01 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.52 Total: -64.01 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.18 Total: -13.15 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.70 -8.87 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579328703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.352 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds