Wall clock time and date at job start Tue Mar 31 2020 21:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35635 * 116.99946 * 2 1 4 4 N 1.32960 * 120.49970 * 0.20615 * 3 2 1 5 5 C 1.31749 * 120.96586 * 180.26997 * 4 3 2 6 6 N 1.31790 * 122.01889 * 359.77520 * 5 4 3 7 7 C 1.33024 * 120.88515 * 359.97438 * 6 5 4 8 8 N 1.38825 * 120.52911 * 180.02562 * 7 6 5 9 9 C 1.46896 * 110.99726 * 324.08211 * 8 7 6 10 10 C 1.46892 * 110.99769 * 88.03580 * 8 7 6 11 11 C 1.39376 * 120.49515 * 179.97438 * 3 2 1 12 12 N 1.40415 * 120.91090 * 0.02562 * 11 3 2 13 13 C 1.34780 * 119.99441 * 299.23357 * 12 11 3 14 14 O 1.21298 * 120.00152 * 353.51026 * 13 12 11 15 15 C 1.50703 * 119.99706 * 173.51567 * 13 12 11 16 16 H 1.09000 * 109.47507 * 39.99670 * 15 13 12 17 17 N 1.46897 * 109.46978 * 159.99827 * 15 13 12 18 18 C 1.53000 * 109.46798 * 279.99990 * 15 13 12 19 19 C 1.53007 * 109.46923 * 175.00223 * 18 15 13 20 20 C 1.53005 * 109.46813 * 179.97438 * 19 18 15 21 21 C 1.50693 * 109.46734 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00453 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00188 * 180.02562 * 21 20 19 24 24 N 1.31524 * 119.99944 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00632 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47212 * 59.99572 * 25 23 21 27 27 H 1.48494 * 109.47349 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46809 * 299.99832 * 25 23 21 29 29 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00639 * 1 2 3 31 31 H 1.08996 * 109.46549 * 60.00364 * 1 2 3 32 32 H 1.07995 * 118.99671 * 179.75477 * 5 4 3 33 33 H 1.09006 * 109.47337 * 63.95401 * 9 8 7 34 34 H 1.09002 * 109.47043 * 183.94809 * 9 8 7 35 35 H 1.08999 * 109.47711 * 303.95466 * 9 8 7 36 36 H 1.09001 * 109.47299 * 48.72687 * 10 8 7 37 37 H 1.09000 * 109.47241 * 168.72925 * 10 8 7 38 38 H 1.08999 * 109.47273 * 288.72528 * 10 8 7 39 39 H 0.96994 * 120.00201 * 119.23774 * 12 11 3 40 40 H 1.00902 * 111.00200 * 296.04311 * 17 15 13 41 41 H 1.00906 * 111.00108 * 60.00190 * 17 15 13 42 42 H 1.08991 * 109.47313 * 55.00014 * 18 15 13 43 43 H 1.08998 * 109.47015 * 294.99502 * 18 15 13 44 44 H 1.09005 * 109.46791 * 59.99874 * 19 18 15 45 45 H 1.08999 * 109.46968 * 299.99949 * 19 18 15 46 46 H 1.09000 * 109.46883 * 299.99659 * 20 19 18 47 47 H 1.08995 * 109.46772 * 60.00372 * 20 19 18 48 48 H 0.96995 * 120.00435 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3304 2.3299 0.0041 5 6 1.9189 3.5086 -0.0012 6 7 3.2308 3.6346 -0.0063 7 6 4.0196 2.5635 -0.0059 8 7 5.4006 2.7048 -0.0108 9 6 5.8086 3.8610 -0.8199 10 6 5.9240 2.8090 1.3578 11 6 3.4360 1.2935 0.0005 12 7 4.2294 0.1350 0.0005 13 6 4.1394 -0.7433 1.0189 14 8 3.4632 -0.4783 1.9904 15 6 4.8791 -2.0545 0.9506 16 1 5.8651 -1.8932 0.5149 17 7 5.0261 -2.6049 2.3046 18 6 4.0928 -3.0389 0.0825 19 6 4.9018 -4.3261 -0.0895 20 6 4.1152 -5.3108 -0.9571 21 6 4.9123 -6.5783 -1.1269 22 1 5.8826 -6.6724 -0.6622 23 6 4.4029 -7.6179 -1.8756 24 7 3.2210 -7.5036 -2.4412 25 14 5.3905 -9.1895 -2.0856 26 1 5.6438 -9.7967 -0.7543 27 1 4.6272 -10.1451 -2.9278 28 1 6.6856 -8.8763 -2.7413 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.3077 4.3989 -0.0016 33 1 5.4241 4.7751 -0.3673 34 1 6.8967 3.9076 -0.8644 35 1 5.4077 3.7585 -1.8283 36 1 5.5024 2.0115 1.9697 37 1 7.0100 2.7176 1.3395 38 1 5.6479 3.7754 1.7798 39 1 4.8422 -0.0331 -0.7322 40 1 5.5968 -2.0033 2.8795 41 1 4.1251 -2.7635 2.7303 42 1 3.9069 -2.5933 -0.8947 43 1 3.1422 -3.2688 0.5638 44 1 5.0877 -4.7717 0.8879 45 1 5.8524 -4.0962 -0.5707 46 1 3.1648 -5.5405 -0.4754 47 1 3.9290 -4.8654 -1.9343 48 1 2.8627 -8.2348 -2.9683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579328703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:05 Heat of formation + Delta-G solvation = -44.175555 kcal Electronic energy + Delta-G solvation = -29941.201855 eV Core-core repulsion = 25837.813798 eV Total energy + Delta-G solvation = -4103.388057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74406 -40.89863 -39.97726 -38.21960 -37.19648 -36.15102 -35.22010 -33.61115 -33.10872 -31.45761 -29.52390 -28.77963 -28.59832 -27.02116 -26.18780 -25.29820 -23.78017 -23.05247 -21.77863 -21.39938 -19.73992 -19.29141 -18.81197 -18.40627 -18.26843 -17.30601 -17.16867 -16.93182 -16.45991 -16.30947 -16.27581 -16.01608 -15.40508 -15.32218 -15.17751 -15.04762 -14.83990 -14.52186 -14.25353 -13.63856 -13.31959 -13.22521 -13.12001 -13.05926 -12.82415 -12.79455 -12.69621 -12.53408 -12.45483 -12.38832 -12.16135 -11.71354 -11.55280 -11.35892 -11.24599 -11.21728 -10.95664 -10.57002 -10.49392 -9.97875 -9.76833 -9.55739 -8.15014 -6.25457 -0.37460 -0.13025 1.40722 1.42736 1.45901 1.53540 1.68506 1.96092 2.38548 2.45031 2.57193 2.99887 3.15410 3.17944 3.44824 3.63812 3.90585 3.95241 4.03823 4.17126 4.18362 4.27378 4.28743 4.29231 4.52687 4.55294 4.58282 4.65318 4.70383 4.79361 4.82323 4.94948 4.99620 5.15167 5.18771 5.30384 5.37537 5.46799 5.63057 5.73786 5.82694 5.87107 5.96009 5.98095 6.02808 6.31653 6.32604 6.48467 6.85595 6.92424 7.05613 7.43481 8.96638 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002577 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.443126 B =10864.194346 C =11614.978026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.307 6.307 3 C 0.359 3.641 4 N -0.581 5.581 5 C 0.343 3.657 6 N -0.566 5.566 7 C 0.361 3.639 8 N -0.490 5.490 9 C 0.032 3.968 10 C 0.038 3.962 11 C 0.016 3.984 12 N -0.641 5.641 13 C 0.497 3.503 14 O -0.566 6.566 15 C 0.095 3.905 16 H 0.128 0.872 17 N -0.814 5.814 18 C -0.090 4.090 19 C -0.083 4.083 20 C 0.023 3.977 21 C -0.539 4.539 22 H 0.061 0.939 23 C -0.003 4.003 24 N -0.936 5.936 25 Si 0.963 3.037 26 H -0.268 1.268 27 H -0.285 1.285 28 H -0.265 1.265 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.240 0.760 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.424 0.576 40 H 0.350 0.650 41 H 0.345 0.655 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.057 0.943 46 H -0.017 1.017 47 H -0.010 1.010 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 27.426 5.216 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.210 6.210 3 C 0.172 3.828 4 N -0.313 5.313 5 C 0.054 3.946 6 N -0.289 5.289 7 C 0.124 3.876 8 N -0.212 5.212 9 C -0.115 4.115 10 C -0.107 4.107 11 C -0.086 4.086 12 N -0.291 5.291 13 C 0.284 3.716 14 O -0.444 6.444 15 C -0.021 4.021 16 H 0.145 0.855 17 N -0.343 5.343 18 C -0.129 4.129 19 C -0.120 4.120 20 C -0.014 4.014 21 C -0.577 4.577 22 H 0.079 0.921 23 C -0.200 4.200 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.193 1.193 27 H -0.210 1.210 28 H -0.189 1.189 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.264 0.736 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.001 0.999 47 H 0.009 0.991 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.102 26.866 5.259 27.456 hybrid contribution -0.566 -0.143 -0.011 0.584 sum 1.535 26.723 5.248 27.276 Atomic orbital electron populations 1.23140 0.75058 1.04657 1.02918 1.86320 1.24982 1.23877 1.85848 1.20482 0.88861 0.85814 0.87692 1.68226 1.41392 0.98914 1.22747 1.25288 0.87999 0.94426 0.86846 1.68622 1.07299 1.32786 1.20160 1.20226 0.91623 0.86725 0.89058 1.59741 1.02755 1.43827 1.14890 1.22439 1.02532 0.89800 0.96697 1.22430 1.02452 1.00727 0.85137 1.18078 0.87981 0.88799 1.13705 1.43103 1.42152 1.18900 1.24982 1.22701 0.80970 0.86585 0.81373 1.90660 1.42242 1.78112 1.33348 1.21584 1.00162 0.87315 0.93067 0.85471 1.59053 1.21347 1.50954 1.02920 1.21412 0.97940 0.95240 0.98284 1.21284 0.97763 0.93466 0.99522 1.19033 0.94570 0.93870 0.93934 1.21719 1.04153 1.00940 1.30931 0.92077 1.25992 0.96109 1.02499 0.95422 1.70102 1.18961 1.33801 1.34796 0.85531 0.78753 0.78562 0.78394 1.19316 1.21035 1.18927 0.87009 0.91919 0.90990 0.74409 0.93234 0.88232 0.91572 0.93158 0.87287 0.93730 0.73597 0.83641 0.84140 0.91353 0.93696 0.92371 0.92426 0.99853 0.99128 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.41 113.37 1.18 1.99 16 2 O -0.31 -9.00 9.31 -86.01 -0.80 -9.80 16 3 C 0.36 9.84 7.08 84.80 0.60 10.44 16 4 N -0.58 -13.57 9.38 -312.59 -2.93 -16.50 16 5 C 0.34 6.26 12.27 180.90 2.22 8.48 16 6 N -0.57 -11.28 9.35 -197.25 -1.84 -13.12 16 7 C 0.36 7.77 5.60 133.09 0.74 8.52 16 8 N -0.49 -8.25 4.76 -750.75 -3.58 -11.82 16 9 C 0.03 0.40 9.09 127.69 1.16 1.56 16 10 C 0.04 0.56 9.62 127.69 1.23 1.79 16 11 C 0.02 0.40 5.72 38.41 0.22 0.62 16 12 N -0.64 -15.11 4.98 -302.04 -1.51 -16.61 16 13 C 0.50 13.53 6.38 87.66 0.56 14.09 16 14 O -0.57 -19.02 15.49 0.39 0.01 -19.01 16 15 C 0.09 2.46 3.15 44.17 0.14 2.60 16 16 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 17 N -0.81 -21.20 8.44 -171.80 -1.45 -22.65 16 18 C -0.09 -3.01 4.84 30.60 0.15 -2.86 16 19 C -0.08 -3.35 5.04 30.60 0.15 -3.20 16 20 C 0.02 1.23 4.97 29.85 0.15 1.38 16 21 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 22 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 23 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 24 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 25 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 1.34 8.12 -2.38 -0.02 1.32 16 31 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 32 H 0.24 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.05 0.65 7.76 -2.38 -0.02 0.63 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.05 0.96 8.04 -2.39 -0.02 0.94 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 0.64 8.11 -2.39 -0.02 0.62 16 39 H 0.42 8.16 8.83 -92.71 -0.82 7.34 16 40 H 0.35 7.62 9.06 -89.69 -0.81 6.81 16 41 H 0.35 9.76 8.58 -89.69 -0.77 8.99 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 2.41 7.75 -2.38 -0.02 2.40 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 47 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 48 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -75.74 404.48 -1.99 -77.73 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -1.41 Total: 27.85 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 9.20 Total: 14.79 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -11.02 Total: -138.36 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.79 Total: -28.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.74 -1.99 -77.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579328703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.556 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds