Wall clock time and date at job start Tue Mar 31 2020 21:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35634 * 117.00177 * 2 1 4 4 N 1.32955 * 120.49787 * 359.97438 * 3 2 1 5 5 C 1.31757 * 120.96880 * 179.72733 * 4 3 2 6 6 N 1.31785 * 122.01178 * 0.02562 * 5 4 3 7 7 C 1.33026 * 120.89337 * 359.97433 * 6 5 4 8 8 N 1.38816 * 120.52881 * 180.02562 * 7 6 5 9 9 C 1.46889 * 111.00228 * 350.87507 * 8 7 6 10 10 C 1.46905 * 110.99870 * 114.83040 * 8 7 6 11 11 C 1.39374 * 120.49716 * 179.71872 * 3 2 1 12 12 N 1.40414 * 120.90926 * 0.25729 * 11 3 2 13 13 C 1.34774 * 119.99943 * 303.85284 * 12 11 3 14 14 O 1.21301 * 120.00034 * 355.40260 * 13 12 11 15 15 C 1.50704 * 120.00152 * 175.40083 * 13 12 11 16 16 H 1.08995 * 109.46764 * 320.00434 * 15 13 12 17 17 N 1.46893 * 109.47061 * 200.00111 * 15 13 12 18 18 C 1.53005 * 109.46846 * 80.00292 * 15 13 12 19 19 C 1.53005 * 109.46788 * 185.00037 * 18 15 13 20 20 C 1.52997 * 109.47032 * 179.97438 * 19 18 15 21 21 C 1.50691 * 109.47331 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00000 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00454 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99617 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46621 * 120.00129 * 25 23 21 28 28 H 1.48496 * 109.47215 * 240.00026 * 25 23 21 29 29 H 1.09007 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47487 * 299.99979 * 1 2 3 31 31 H 1.08998 * 109.46880 * 60.00102 * 1 2 3 32 32 H 1.07993 * 118.99243 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47198 * 59.99722 * 9 8 7 34 34 H 1.09005 * 109.47501 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.47486 * 299.99909 * 9 8 7 36 36 H 1.08998 * 109.47085 * 79.09364 * 10 8 7 37 37 H 1.08997 * 109.47163 * 199.09484 * 10 8 7 38 38 H 1.09000 * 109.46665 * 319.09509 * 10 8 7 39 39 H 0.97004 * 119.99933 * 123.86054 * 12 11 3 40 40 H 1.00898 * 111.00319 * 300.00018 * 17 15 13 41 41 H 1.00907 * 111.00204 * 63.95617 * 17 15 13 42 42 H 1.08999 * 109.46965 * 304.99847 * 18 15 13 43 43 H 1.08990 * 109.47091 * 65.00269 * 18 15 13 44 44 H 1.08991 * 109.47377 * 299.99969 * 19 18 15 45 45 H 1.09004 * 109.47050 * 60.00011 * 19 18 15 46 46 H 1.08997 * 109.47648 * 300.00639 * 20 19 18 47 47 H 1.09004 * 109.46895 * 60.00283 * 20 19 18 48 48 H 0.96999 * 119.99939 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3304 2.3298 -0.0005 5 6 1.9189 3.5086 0.0049 6 7 3.2307 3.6345 0.0104 7 6 4.0197 2.5634 0.0114 8 7 5.4006 2.7048 0.0178 9 6 5.7874 4.1058 -0.1946 10 6 5.9774 2.1825 1.2638 11 6 3.4359 1.2935 0.0059 12 7 4.2293 0.1350 0.0065 13 6 4.0696 -0.7906 0.9731 14 8 3.3005 -0.5853 1.8883 15 6 4.8467 -2.0806 0.9169 16 1 4.8882 -2.4351 -0.1130 17 7 4.1838 -3.0884 1.7553 18 6 6.2676 -1.8430 1.4323 19 6 7.0929 -3.1197 1.2594 20 6 8.5139 -2.8819 1.7741 21 6 9.3270 -4.1391 1.6033 22 1 8.8756 -5.0195 1.1704 23 6 10.6474 -4.1654 1.9996 24 7 11.1971 -3.0934 2.5272 25 14 11.6551 -5.7241 1.7884 26 1 10.8102 -6.7806 1.1758 27 1 12.8169 -5.4465 0.9062 28 1 12.1394 -6.1839 3.1147 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3076 4.3989 0.0038 33 1 5.3691 4.7228 0.6007 34 1 6.8743 4.1882 -0.1855 35 1 5.4057 4.4462 -1.1573 36 1 6.0374 1.0956 1.2088 37 1 6.9768 2.5950 1.4024 38 1 5.3460 2.4695 2.1047 39 1 4.8924 0.0008 -0.6887 40 1 4.1328 -2.7831 2.7156 41 1 3.2669 -3.3103 1.3972 42 1 6.7284 -1.0330 0.8669 43 1 6.2309 -1.5743 2.4879 44 1 6.6321 -3.9296 1.8247 45 1 7.1295 -3.3885 0.2036 46 1 8.9746 -2.0720 1.2086 47 1 8.4777 -2.6129 2.8298 48 1 12.1258 -3.1120 2.8063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579328704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:12 Heat of formation + Delta-G solvation = -15.694317 kcal Electronic energy + Delta-G solvation = -30112.916713 eV Core-core repulsion = 26010.763695 eV Total energy + Delta-G solvation = -4102.153018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88903 -39.84547 -39.12439 -37.44322 -35.86668 -35.08669 -33.34305 -32.75882 -31.35857 -30.55514 -28.17173 -27.93782 -27.72158 -25.66598 -25.28958 -23.94993 -22.36685 -22.22703 -20.39528 -20.02975 -18.85587 -18.43575 -17.81789 -17.17204 -16.47593 -16.31221 -16.19595 -15.79492 -15.49844 -15.47242 -14.77146 -14.47458 -14.41701 -14.39721 -14.20749 -14.01681 -13.88962 -13.01776 -12.67542 -12.58197 -12.40867 -12.35727 -12.01302 -11.92406 -11.76664 -11.59180 -11.50559 -11.16367 -10.95948 -10.76680 -10.61927 -10.42570 -10.36265 -10.26046 -9.67026 -9.61764 -9.24213 -9.19854 -9.03824 -8.65013 -8.46757 -8.29983 -5.95802 -3.97019 0.54814 0.83480 2.42212 2.58207 2.89709 3.15625 3.33915 3.41463 3.46120 3.48943 3.78342 3.99000 4.45002 4.50951 4.63493 4.73103 4.83957 4.92508 5.00357 5.03068 5.06711 5.17005 5.19631 5.26923 5.35652 5.37280 5.40464 5.52908 5.64138 5.70175 5.90907 6.02137 6.08033 6.17477 6.42320 6.60981 6.65771 6.80746 6.88857 6.99883 7.04787 7.23603 7.27813 7.49251 7.74781 7.75764 7.89872 8.05355 8.06028 8.49573 9.10850 9.66865 11.15674 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.002700 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.887779 B =10368.514240 C =11874.141939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.286 6.286 3 C 0.381 3.619 4 N -0.582 5.582 5 C 0.346 3.654 6 N -0.564 5.564 7 C 0.366 3.634 8 N -0.478 5.478 9 C 0.034 3.966 10 C 0.027 3.973 11 C 0.016 3.984 12 N -0.657 5.657 13 C 0.487 3.513 14 O -0.529 6.529 15 C 0.082 3.918 16 H 0.103 0.897 17 N -0.808 5.808 18 C -0.105 4.105 19 C -0.100 4.100 20 C 0.020 3.980 21 C -0.515 4.515 22 H 0.056 0.944 23 C 0.055 3.945 24 N -0.897 5.897 25 Si 0.890 3.110 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.202 0.798 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.415 0.585 40 H 0.350 0.650 41 H 0.339 0.661 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.012 0.988 47 H 0.013 0.987 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.144 14.326 -7.296 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.189 6.189 3 C 0.194 3.806 4 N -0.314 5.314 5 C 0.057 3.943 6 N -0.288 5.288 7 C 0.126 3.874 8 N -0.196 5.196 9 C -0.113 4.113 10 C -0.118 4.118 11 C -0.086 4.086 12 N -0.308 5.308 13 C 0.274 3.726 14 O -0.403 6.403 15 C -0.034 4.034 16 H 0.121 0.879 17 N -0.337 5.337 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.017 4.017 21 C -0.554 4.554 22 H 0.074 0.926 23 C -0.146 4.146 24 N -0.537 5.537 25 Si 0.718 3.282 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.219 0.781 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.032 0.968 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.105 14.133 -7.115 25.585 hybrid contribution 0.123 -0.137 0.230 0.294 sum -19.983 13.995 -6.885 25.349 Atomic orbital electron populations 1.22939 0.76659 1.03366 1.02512 1.86307 1.23200 1.23358 1.86022 1.19975 0.87993 0.85379 0.87265 1.68136 1.41128 0.98689 1.23486 1.24448 0.87678 0.93882 0.88335 1.68442 1.06688 1.32163 1.21490 1.19975 0.90539 0.87230 0.89609 1.59025 1.03330 1.22230 1.34995 1.22360 1.01026 0.85160 1.02777 1.22582 0.99941 1.02544 0.86775 1.17723 0.88264 0.87907 1.14723 1.43424 1.39281 1.17889 1.30171 1.22826 0.82689 0.86423 0.80686 1.90684 1.37459 1.78693 1.33497 1.21760 0.95400 0.85892 1.00309 0.87879 1.59055 1.26018 1.41866 1.06722 1.21697 0.90598 1.00967 1.01045 1.21536 0.97029 0.94664 1.00509 1.19116 0.89630 0.96810 0.96174 1.21319 0.95659 0.98271 1.40121 0.92615 1.25027 0.98015 0.96114 0.95416 1.69974 1.13132 1.28106 1.42512 0.86573 0.80196 0.83741 0.77721 1.19716 1.21121 1.21097 0.88309 0.92005 0.92098 0.78146 0.93141 0.90424 0.90579 0.89760 0.89286 0.93974 0.74668 0.83610 0.84871 0.91798 0.91910 0.91810 0.93583 0.96915 0.96827 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.41 101.05 1.05 1.41 16 2 O -0.29 -3.61 8.78 -34.70 -0.30 -3.91 16 3 C 0.38 4.95 7.00 -16.64 -0.12 4.83 16 4 N -0.58 -6.73 9.38 -14.59 -0.14 -6.86 16 5 C 0.35 3.42 12.28 -92.19 -1.13 2.29 16 6 N -0.56 -6.27 8.91 -13.70 -0.12 -6.39 16 7 C 0.37 4.37 6.11 -154.43 -0.94 3.42 16 8 N -0.48 -5.11 4.88 -188.64 -0.92 -6.03 16 9 C 0.03 0.29 8.73 60.06 0.52 0.82 16 10 C 0.03 0.29 9.36 60.07 0.56 0.86 16 11 C 0.02 0.20 5.63 -82.93 -0.47 -0.26 16 12 N -0.66 -7.75 3.59 -9.40 -0.03 -7.79 16 13 C 0.49 6.55 5.98 -10.98 -0.07 6.49 16 14 O -0.53 -8.65 14.93 -10.56 -0.16 -8.80 16 15 C 0.08 1.08 3.15 -68.86 -0.22 0.87 16 16 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 17 N -0.81 -10.74 8.44 -5.66 -0.05 -10.78 16 18 C -0.10 -1.63 4.84 -26.73 -0.13 -1.76 16 19 C -0.10 -1.96 5.04 -26.73 -0.13 -2.10 16 20 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 21 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 23 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 24 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 25 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.05 0.45 7.82 -51.93 -0.41 0.05 16 34 H 0.08 0.57 7.97 -51.93 -0.41 0.15 16 35 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 36 H 0.08 0.99 6.04 -51.93 -0.31 0.68 16 37 H 0.09 0.82 7.77 -51.93 -0.40 0.41 16 38 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 39 H 0.42 4.18 8.83 -40.82 -0.36 3.82 16 40 H 0.35 4.84 8.58 -39.29 -0.34 4.50 16 41 H 0.34 3.98 9.06 -39.29 -0.36 3.62 16 42 H 0.06 0.92 7.63 -51.93 -0.40 0.53 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -34.10 397.79 -9.20 -43.29 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.57 Total: 6.96 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.62 Total: 3.83 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.52 Total: -64.05 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.46 Total: -12.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.10 -9.20 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579328704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.598 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds