Wall clock time and date at job start Tue Mar 31 2020 21:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35634 * 117.00177 * 2 1 4 4 N 1.32955 * 120.49787 * 359.97438 * 3 2 1 5 5 C 1.31757 * 120.96880 * 179.72733 * 4 3 2 6 6 N 1.31785 * 122.01178 * 0.02562 * 5 4 3 7 7 C 1.33026 * 120.89337 * 359.97433 * 6 5 4 8 8 N 1.38816 * 120.52881 * 180.02562 * 7 6 5 9 9 C 1.46889 * 111.00228 * 350.87507 * 8 7 6 10 10 C 1.46905 * 110.99870 * 114.83040 * 8 7 6 11 11 C 1.39374 * 120.49716 * 179.71872 * 3 2 1 12 12 N 1.40414 * 120.90926 * 0.25729 * 11 3 2 13 13 C 1.34774 * 119.99943 * 303.85284 * 12 11 3 14 14 O 1.21301 * 120.00034 * 355.40260 * 13 12 11 15 15 C 1.50704 * 120.00152 * 175.40083 * 13 12 11 16 16 H 1.08995 * 109.46764 * 320.00434 * 15 13 12 17 17 N 1.46893 * 109.47061 * 200.00111 * 15 13 12 18 18 C 1.53005 * 109.46846 * 80.00292 * 15 13 12 19 19 C 1.53005 * 109.46788 * 185.00037 * 18 15 13 20 20 C 1.52997 * 109.47032 * 179.97438 * 19 18 15 21 21 C 1.50691 * 109.47331 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00000 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00454 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99617 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46621 * 120.00129 * 25 23 21 28 28 H 1.48496 * 109.47215 * 240.00026 * 25 23 21 29 29 H 1.09007 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47487 * 299.99979 * 1 2 3 31 31 H 1.08998 * 109.46880 * 60.00102 * 1 2 3 32 32 H 1.07993 * 118.99243 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47198 * 59.99722 * 9 8 7 34 34 H 1.09005 * 109.47501 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.47486 * 299.99909 * 9 8 7 36 36 H 1.08998 * 109.47085 * 79.09364 * 10 8 7 37 37 H 1.08997 * 109.47163 * 199.09484 * 10 8 7 38 38 H 1.09000 * 109.46665 * 319.09509 * 10 8 7 39 39 H 0.97004 * 119.99933 * 123.86054 * 12 11 3 40 40 H 1.00898 * 111.00319 * 300.00018 * 17 15 13 41 41 H 1.00907 * 111.00204 * 63.95617 * 17 15 13 42 42 H 1.08999 * 109.46965 * 304.99847 * 18 15 13 43 43 H 1.08990 * 109.47091 * 65.00269 * 18 15 13 44 44 H 1.08991 * 109.47377 * 299.99969 * 19 18 15 45 45 H 1.09004 * 109.47050 * 60.00011 * 19 18 15 46 46 H 1.08997 * 109.47648 * 300.00639 * 20 19 18 47 47 H 1.09004 * 109.46895 * 60.00283 * 20 19 18 48 48 H 0.96999 * 119.99939 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3304 2.3298 -0.0005 5 6 1.9189 3.5086 0.0049 6 7 3.2307 3.6345 0.0104 7 6 4.0197 2.5634 0.0114 8 7 5.4006 2.7048 0.0178 9 6 5.7874 4.1058 -0.1946 10 6 5.9774 2.1825 1.2638 11 6 3.4359 1.2935 0.0059 12 7 4.2293 0.1350 0.0065 13 6 4.0696 -0.7906 0.9731 14 8 3.3005 -0.5853 1.8883 15 6 4.8467 -2.0806 0.9169 16 1 4.8882 -2.4351 -0.1130 17 7 4.1838 -3.0884 1.7553 18 6 6.2676 -1.8430 1.4323 19 6 7.0929 -3.1197 1.2594 20 6 8.5139 -2.8819 1.7741 21 6 9.3270 -4.1391 1.6033 22 1 8.8756 -5.0195 1.1704 23 6 10.6474 -4.1654 1.9996 24 7 11.1971 -3.0934 2.5272 25 14 11.6551 -5.7241 1.7884 26 1 10.8102 -6.7806 1.1758 27 1 12.8169 -5.4465 0.9062 28 1 12.1394 -6.1839 3.1147 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3076 4.3989 0.0038 33 1 5.3691 4.7228 0.6007 34 1 6.8743 4.1882 -0.1855 35 1 5.4057 4.4462 -1.1573 36 1 6.0374 1.0956 1.2088 37 1 6.9768 2.5950 1.4024 38 1 5.3460 2.4695 2.1047 39 1 4.8924 0.0008 -0.6887 40 1 4.1328 -2.7831 2.7156 41 1 3.2669 -3.3103 1.3972 42 1 6.7284 -1.0330 0.8669 43 1 6.2309 -1.5743 2.4879 44 1 6.6321 -3.9296 1.8247 45 1 7.1295 -3.3885 0.2036 46 1 8.9746 -2.0720 1.2086 47 1 8.4777 -2.6129 2.8298 48 1 12.1258 -3.1120 2.8063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579328704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:10 Heat of formation + Delta-G solvation = -40.871737 kcal Electronic energy + Delta-G solvation = -30114.008488 eV Core-core repulsion = 26010.763695 eV Total energy + Delta-G solvation = -4103.244793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.76220 -40.89748 -39.96909 -38.27843 -37.19275 -36.12236 -35.21260 -33.60448 -33.09778 -31.46457 -29.50444 -28.92954 -28.51329 -27.00885 -26.19490 -25.21111 -23.76830 -23.08805 -21.79275 -21.37260 -19.70618 -19.31815 -18.79087 -18.39985 -18.20356 -17.32455 -17.07195 -17.00456 -16.44996 -16.31630 -16.23926 -15.97901 -15.47988 -15.29690 -15.20497 -15.04690 -14.78910 -14.52306 -14.25695 -13.62019 -13.47169 -13.32573 -13.15731 -13.04136 -12.84769 -12.75276 -12.69131 -12.47850 -12.42794 -12.32024 -12.14396 -11.85459 -11.54138 -11.35298 -11.26341 -11.18685 -10.94352 -10.53497 -10.49193 -10.06703 -9.75166 -9.38965 -8.14675 -6.24085 -0.31118 -0.05833 1.41991 1.42533 1.43569 1.56372 1.71587 1.93582 2.32014 2.45375 2.63793 3.03608 3.18777 3.20168 3.44423 3.65022 3.85851 3.91595 4.04210 4.14463 4.16267 4.20941 4.32839 4.33506 4.45097 4.54518 4.60979 4.64029 4.69849 4.75592 4.83930 4.98849 5.00488 5.13561 5.18565 5.29804 5.33865 5.38779 5.64631 5.78015 5.81682 5.89084 5.97758 6.00306 6.04419 6.29496 6.34377 6.47232 6.92069 6.94027 7.04731 7.44717 8.97140 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.002700 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.887779 B =10368.514240 C =11874.141939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.303 6.303 3 C 0.368 3.632 4 N -0.588 5.588 5 C 0.348 3.652 6 N -0.569 5.569 7 C 0.362 3.638 8 N -0.480 5.480 9 C 0.035 3.965 10 C 0.032 3.968 11 C -0.007 4.007 12 N -0.644 5.644 13 C 0.495 3.505 14 O -0.559 6.559 15 C 0.093 3.907 16 H 0.123 0.877 17 N -0.814 5.814 18 C -0.094 4.094 19 C -0.084 4.084 20 C 0.023 3.977 21 C -0.537 4.537 22 H 0.058 0.942 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.281 1.281 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.240 0.760 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.028 0.972 39 H 0.423 0.577 40 H 0.346 0.654 41 H 0.349 0.651 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.055 0.945 46 H -0.005 1.005 47 H -0.015 1.015 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.689 14.283 -8.510 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.181 3.819 4 N -0.321 5.321 5 C 0.059 3.941 6 N -0.293 5.293 7 C 0.122 3.878 8 N -0.198 5.198 9 C -0.111 4.111 10 C -0.114 4.114 11 C -0.109 4.109 12 N -0.295 5.295 13 C 0.281 3.719 14 O -0.436 6.436 15 C -0.023 4.023 16 H 0.141 0.859 17 N -0.342 5.342 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.014 4.014 21 C -0.575 4.575 22 H 0.077 0.923 23 C -0.199 4.199 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.207 1.207 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.256 0.744 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.013 0.987 47 H 0.003 0.997 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.665 14.096 -8.365 26.376 hybrid contribution 0.251 -0.047 0.603 0.655 sum -20.414 14.050 -7.762 25.969 Atomic orbital electron populations 1.23139 0.75103 1.04839 1.02642 1.86277 1.24865 1.23520 1.85933 1.20209 0.88342 0.85930 0.87398 1.68215 1.41124 0.98836 1.23889 1.25284 0.87719 0.94599 0.86481 1.68529 1.07203 1.31741 1.21857 1.20156 0.91152 0.87269 0.89206 1.59033 1.02824 1.23347 1.34584 1.22414 1.02022 0.83955 1.02694 1.22529 1.00525 1.01907 0.86455 1.17899 0.88550 0.88277 1.16220 1.43248 1.39001 1.17404 1.29815 1.22708 0.82236 0.86484 0.80446 1.90671 1.38938 1.79219 1.34751 1.21611 0.93629 0.86008 1.01052 0.85918 1.59065 1.26804 1.41750 1.06607 1.21492 0.91808 0.99212 1.00700 1.21278 0.94100 0.96372 1.00401 1.19036 0.92747 0.95270 0.94329 1.21772 0.96438 0.99290 1.40044 0.92349 1.25939 0.99391 0.99532 0.95014 1.70097 1.13643 1.30320 1.43402 0.85472 0.78531 0.79668 0.77830 1.18634 1.20361 1.20680 0.86234 0.92543 0.91217 0.74377 0.93409 0.88849 0.90393 0.90929 0.87679 0.95279 0.73732 0.84065 0.83743 0.90542 0.93246 0.92596 0.92651 0.98687 0.99666 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.41 113.37 1.18 1.81 16 2 O -0.30 -7.45 8.78 -74.07 -0.65 -8.10 16 3 C 0.37 9.34 7.00 84.80 0.59 9.93 16 4 N -0.59 -12.95 9.38 -312.60 -2.93 -15.88 16 5 C 0.35 6.30 12.28 180.90 2.22 8.52 16 6 N -0.57 -11.93 8.91 -197.26 -1.76 -13.69 16 7 C 0.36 8.35 6.11 133.09 0.81 9.17 16 8 N -0.48 -9.83 4.88 -750.74 -3.66 -13.49 16 9 C 0.04 0.57 8.73 127.69 1.11 1.69 16 10 C 0.03 0.67 9.36 127.69 1.19 1.86 16 11 C -0.01 -0.18 5.63 38.41 0.22 0.03 16 12 N -0.64 -14.79 3.59 -302.05 -1.08 -15.87 16 13 C 0.49 13.02 5.98 87.66 0.52 13.55 16 14 O -0.56 -18.23 14.93 12.30 0.18 -18.05 16 15 C 0.09 2.35 3.15 44.17 0.14 2.48 16 16 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 17 N -0.81 -20.95 8.44 -171.81 -1.45 -22.40 16 18 C -0.09 -2.89 4.84 30.60 0.15 -2.74 16 19 C -0.08 -3.28 5.04 30.59 0.15 -3.13 16 20 C 0.02 1.20 4.97 29.84 0.15 1.35 16 21 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 22 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 23 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 24 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 25 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 26 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 32 H 0.24 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 34 H 0.09 1.20 7.97 -2.38 -0.02 1.18 16 35 H 0.08 1.23 8.11 -2.38 -0.02 1.21 16 36 H 0.07 1.70 6.04 -2.39 -0.01 1.68 16 37 H 0.10 1.84 7.77 -2.39 -0.02 1.82 16 38 H 0.03 0.68 7.92 -2.39 -0.02 0.66 16 39 H 0.42 8.09 8.83 -92.71 -0.82 7.27 16 40 H 0.35 9.51 8.58 -89.70 -0.77 8.74 16 41 H 0.35 7.80 9.06 -89.69 -0.81 6.99 16 42 H 0.08 2.16 7.63 -2.39 -0.02 2.14 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -73.51 397.79 -1.30 -74.81 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -1.40 Total: 28.04 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 9.14 Total: 14.63 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -10.60 Total: -137.73 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.47 Total: -26.15 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.51 -1.30 -74.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579328704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.937 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds