Wall clock time and date at job start Tue Mar 31 2020 21:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.53004 * 109.47021 * 184.71920 * 3 2 1 5 5 N 1.46898 * 109.46979 * 69.14148 * 4 3 2 6 6 C 1.46904 * 110.99778 * 286.25216 * 5 4 3 7 7 C 1.50701 * 109.47286 * 302.61450 * 6 5 4 8 8 H 1.08002 * 120.00038 * 4.75333 * 7 6 5 9 9 C 1.37872 * 120.00063 * 184.74812 * 7 6 5 10 10 N 1.31512 * 120.00125 * 354.85127 * 9 7 6 11 11 Si 1.86801 * 120.00007 * 174.85287 * 9 7 6 12 12 H 1.48498 * 109.47140 * 5.00140 * 11 9 7 13 13 H 1.48511 * 109.47122 * 124.99988 * 11 9 7 14 14 H 1.48497 * 109.47131 * 244.99815 * 11 9 7 15 15 C 1.38587 * 110.99737 * 162.30111 * 5 4 3 16 16 N 1.31214 * 126.47320 * 359.97288 * 15 5 4 17 17 N 1.28525 * 109.86110 * 180.02562 * 16 15 5 18 18 C 1.30293 * 110.05211 * 0.02562 * 17 16 15 19 19 C 1.50706 * 126.34869 * 180.02562 * 18 17 16 20 20 N 1.46501 * 109.46985 * 90.02010 * 19 18 17 21 21 C 1.46768 * 124.34505 * 90.00423 * 20 19 18 22 22 C 1.54484 * 105.46860 * 197.01424 * 21 20 19 23 23 C 1.54628 * 101.76720 * 334.58388 * 22 21 20 24 24 C 1.34422 * 124.35353 * 269.70585 * 20 19 18 25 25 O 1.21279 * 124.93731 * 359.56751 * 24 20 19 26 26 N 1.36452 * 126.47198 * 180.28321 * 15 5 4 27 27 C 1.46497 * 127.13758 * 0.02562 * 26 15 5 28 28 H 1.09001 * 109.47302 * 64.93608 * 1 2 3 29 29 H 1.08997 * 109.47408 * 184.93916 * 1 2 3 30 30 H 1.09002 * 109.46987 * 304.94110 * 1 2 3 31 31 H 1.09003 * 109.47154 * 64.71752 * 3 2 1 32 32 H 1.09000 * 109.46821 * 304.71981 * 3 2 1 33 33 H 1.09000 * 109.46680 * 309.13649 * 4 3 2 34 34 H 1.09002 * 109.46926 * 189.13945 * 4 3 2 35 35 H 1.09000 * 109.47305 * 62.62132 * 6 5 4 36 36 H 1.09000 * 109.47020 * 182.61650 * 6 5 4 37 37 H 0.97001 * 120.00011 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46962 * 330.02937 * 19 18 17 39 39 H 1.08997 * 109.47384 * 210.02261 * 19 18 17 40 40 H 1.09000 * 110.24644 * 316.01309 * 21 20 19 41 41 H 1.08999 * 110.24902 * 77.92981 * 21 20 19 42 42 H 1.09005 * 110.96870 * 92.70506 * 22 21 20 43 43 H 1.09006 * 110.96825 * 216.46407 * 22 21 20 44 44 H 1.09004 * 110.48174 * 143.47983 * 23 22 21 45 45 H 1.08998 * 110.48514 * 265.98702 * 23 22 21 46 46 H 1.09005 * 109.46789 * 270.19117 * 27 26 15 47 47 H 1.08998 * 109.47526 * 30.18878 * 27 26 15 48 48 H 1.09000 * 109.47697 * 150.19776 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1866 -0.1187 5 7 3.8810 0.7005 -1.4600 6 6 3.5708 -0.7286 -1.5995 7 6 4.3057 -1.5080 -0.5395 8 1 4.8782 -0.9875 0.2140 9 6 4.2472 -2.8854 -0.5316 10 7 3.4701 -3.5155 -1.3852 11 14 5.2716 -3.8568 0.6917 12 1 5.9612 -2.9196 1.6143 13 1 4.3868 -4.7586 1.4725 14 1 6.2808 -4.6646 -0.0390 15 6 5.2138 0.9497 -1.7465 16 7 6.0841 1.5373 -0.9596 17 7 7.2266 1.6035 -1.5446 18 6 7.1535 1.0671 -2.7297 19 6 8.2770 0.9478 -3.7270 20 7 8.9846 -0.3176 -3.5165 21 6 8.6352 -1.5813 -4.1761 22 6 9.3314 -2.6843 -3.3484 23 6 10.5090 -1.9076 -2.7153 24 6 10.0407 -0.4692 -2.6989 25 8 10.5432 0.4176 -2.0417 26 7 5.8675 0.6358 -2.9023 27 6 5.3079 -0.0271 -4.0828 28 1 -0.3634 0.4353 -0.9309 29 1 -0.3634 -1.0238 0.0885 30 1 -0.3633 0.5886 0.8424 31 1 1.7571 1.8159 0.9293 32 1 1.6233 1.8754 -0.8447 33 1 3.9001 0.4854 0.6298 34 1 3.9856 2.1639 0.0436 35 1 2.4977 -0.8805 -1.4838 36 1 3.8823 -1.0734 -2.5855 37 1 3.4292 -4.4846 -1.3799 38 1 8.9705 1.7782 -3.5941 39 1 7.8698 0.9727 -4.7378 40 1 7.5550 -1.7265 -4.1651 41 1 9.0056 -1.5867 -5.2013 42 1 8.6641 -3.0754 -2.5803 43 1 9.6939 -3.4854 -3.9928 44 1 10.6985 -2.2617 -1.7019 45 1 11.4053 -2.0082 -3.3274 46 1 5.4212 -1.1065 -3.9813 47 1 4.2501 0.2204 -4.1714 48 1 5.8361 0.3113 -4.9743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650291561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:27 Heat of formation + Delta-G solvation = 27.073130 kcal Electronic energy + Delta-G solvation = -31391.673448 eV Core-core repulsion = 27291.374966 eV Total energy + Delta-G solvation = -4100.298482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.30045 -40.15290 -37.95426 -36.32171 -36.17729 -34.47195 -33.18355 -32.56940 -29.94332 -28.97267 -27.67488 -27.42303 -26.62247 -25.88102 -25.46074 -22.92672 -22.09395 -21.80024 -20.60622 -19.74239 -19.21482 -17.04262 -16.88015 -16.67922 -16.28407 -15.95949 -15.78336 -15.50664 -15.15931 -14.80815 -14.56987 -14.29479 -14.11088 -13.73263 -13.57897 -13.47220 -13.14330 -12.86337 -12.74788 -12.54882 -12.38187 -12.12943 -11.82753 -11.63664 -11.48303 -11.27874 -11.12530 -11.03030 -11.00924 -10.84831 -10.75741 -10.46287 -10.05205 -9.95465 -9.70572 -9.61831 -9.46090 -9.07555 -8.91406 -8.74142 -8.42941 -7.34536 -6.11898 -4.15230 2.22635 2.72508 2.92753 3.14439 3.21886 3.31105 3.40868 3.69476 4.33458 4.36555 4.38333 4.45556 4.60733 4.70285 4.80736 4.92259 4.96955 5.05197 5.22669 5.34951 5.42954 5.44894 5.53539 5.56185 5.66572 5.67076 5.75297 5.78495 5.80691 5.82137 5.84226 5.97831 6.00564 6.03926 6.11224 6.36669 6.49569 6.61821 6.73455 6.98614 7.15778 7.26157 7.51403 7.56769 7.75995 7.83407 8.12780 8.14481 8.27911 8.88259 9.48008 9.50814 10.94933 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.004699 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.449268 B = 5957.662620 C = 7238.027478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.069 3.931 4 C 0.071 3.929 5 N -0.460 5.460 6 C 0.181 3.819 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.072 3.928 10 N -0.889 5.889 11 Si 0.883 3.117 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.418 3.582 16 N -0.348 5.348 17 N -0.260 5.260 18 C 0.118 3.882 19 C 0.227 3.773 20 N -0.616 5.616 21 C 0.101 3.899 22 C -0.133 4.133 23 C -0.154 4.154 24 C 0.520 3.480 25 O -0.518 6.518 26 N -0.476 5.476 27 C 0.083 3.917 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 3.137 -10.035 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.008 4.008 4 C -0.057 4.057 5 N -0.184 5.184 6 C 0.057 3.943 7 C -0.574 4.574 8 H 0.077 0.923 9 C -0.131 4.131 10 N -0.528 5.528 11 Si 0.711 3.289 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.211 1.211 15 C 0.062 3.938 16 N -0.194 5.194 17 N -0.100 5.100 18 C -0.150 4.150 19 C 0.103 3.897 20 N -0.352 5.352 21 C -0.022 4.022 22 C -0.171 4.171 23 C -0.194 4.194 24 C 0.307 3.693 25 O -0.392 6.392 26 N -0.172 5.172 27 C -0.060 4.060 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.371 4.263 -8.894 10.423 hybrid contribution -0.150 -1.731 0.006 1.737 sum 3.221 2.532 -8.888 9.787 Atomic orbital electron populations 1.22649 0.82931 1.02177 0.98764 1.88294 1.17887 1.26516 1.94831 1.22502 0.93748 0.85436 0.99100 1.22030 0.93252 1.01251 0.89151 1.59395 1.08079 1.22721 1.28158 1.20333 1.00068 0.76788 0.97068 1.21598 1.30388 0.91840 1.13578 0.92259 1.24781 0.95087 0.97562 0.95644 1.69945 1.37558 1.08434 1.36909 0.86656 0.80323 0.80148 0.81729 1.19721 1.20901 1.21054 1.22809 0.91548 0.95967 0.83473 1.74603 0.95823 1.25704 1.23295 1.73858 1.15871 1.17140 1.03140 1.24666 0.85501 1.06000 0.98872 1.19325 0.89472 0.86694 0.94218 1.48303 1.31631 1.09658 1.45576 1.22135 1.01225 0.82716 0.96144 1.22594 0.97012 0.97235 1.00243 1.22315 0.99602 0.93231 1.04263 1.20904 0.79578 0.90764 0.78023 1.90748 1.59358 1.47179 1.41952 1.45760 1.09475 1.47222 1.14763 1.22016 1.00679 0.98503 0.84797 0.94850 0.90084 0.95120 0.93360 0.93432 0.90321 0.89611 0.90617 0.95166 0.93011 0.86993 0.88997 0.90354 0.90846 0.89673 0.89151 0.88106 0.87978 0.90016 0.88947 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -6.97 7.93 -35.23 -0.28 -7.25 16 3 C 0.07 1.19 6.21 37.16 0.23 1.42 16 4 C 0.07 1.42 4.92 -3.82 -0.02 1.40 16 5 N -0.46 -9.77 4.72 -175.87 -0.83 -10.60 16 6 C 0.18 4.30 4.57 -4.97 -0.02 4.28 16 7 C -0.54 -14.38 7.71 -34.44 -0.27 -14.65 16 8 H 0.06 1.72 6.32 -52.49 -0.33 1.39 16 9 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 10 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 11 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.42 9.09 6.45 -318.87 -2.06 7.03 16 16 N -0.35 -8.20 10.99 30.32 0.33 -7.86 16 17 N -0.26 -5.88 12.18 32.99 0.40 -5.48 16 18 C 0.12 2.19 7.65 -154.02 -1.18 1.01 16 19 C 0.23 3.13 6.31 -5.19 -0.03 3.10 16 20 N -0.62 -8.49 2.92 -173.78 -0.51 -9.00 16 21 C 0.10 1.07 7.35 -3.12 -0.02 1.04 16 22 C -0.13 -1.39 7.18 -25.10 -0.18 -1.57 16 23 C -0.15 -1.78 6.86 -26.74 -0.18 -1.96 16 24 C 0.52 8.22 8.02 -10.86 -0.09 8.14 16 25 O -0.52 -10.38 17.59 5.56 0.10 -10.28 16 26 N -0.48 -8.82 3.21 -121.46 -0.39 -9.21 16 27 C 0.08 1.18 9.05 59.85 0.54 1.72 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.82 5.87 -51.93 -0.30 1.52 16 34 H 0.09 1.64 7.43 -51.93 -0.39 1.26 16 35 H 0.08 1.93 5.68 -51.93 -0.30 1.64 16 36 H 0.03 0.73 5.25 -51.93 -0.27 0.46 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.11 1.56 7.92 -51.93 -0.41 1.15 16 39 H 0.09 0.89 7.26 -51.93 -0.38 0.51 16 40 H 0.08 0.90 7.30 -51.93 -0.38 0.52 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 1.24 7.14 -51.93 -0.37 0.87 16 47 H 0.09 1.32 7.71 -51.93 -0.40 0.92 16 48 H 0.08 0.75 7.25 -51.93 -0.38 0.38 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -36.02 387.25 -9.15 -45.17 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.27 Total: 1.41 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: -2.26 Total: 14.40 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.25 Total: -65.93 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.18 Total: -17.53 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.02 -9.15 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650291561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds