Wall clock time and date at job start Tue Mar 31 2020 21:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.53004 * 109.47021 * 184.71920 * 3 2 1 5 5 N 1.46898 * 109.46979 * 69.14148 * 4 3 2 6 6 C 1.46904 * 110.99778 * 286.25216 * 5 4 3 7 7 C 1.50701 * 109.47286 * 302.61450 * 6 5 4 8 8 H 1.08002 * 120.00038 * 4.75333 * 7 6 5 9 9 C 1.37872 * 120.00063 * 184.74812 * 7 6 5 10 10 N 1.31512 * 120.00125 * 354.85127 * 9 7 6 11 11 Si 1.86801 * 120.00007 * 174.85287 * 9 7 6 12 12 H 1.48498 * 109.47140 * 5.00140 * 11 9 7 13 13 H 1.48511 * 109.47122 * 124.99988 * 11 9 7 14 14 H 1.48497 * 109.47131 * 244.99815 * 11 9 7 15 15 C 1.38587 * 110.99737 * 162.30111 * 5 4 3 16 16 N 1.31214 * 126.47320 * 359.97288 * 15 5 4 17 17 N 1.28525 * 109.86110 * 180.02562 * 16 15 5 18 18 C 1.30293 * 110.05211 * 0.02562 * 17 16 15 19 19 C 1.50706 * 126.34869 * 180.02562 * 18 17 16 20 20 N 1.46501 * 109.46985 * 90.02010 * 19 18 17 21 21 C 1.46768 * 124.34505 * 90.00423 * 20 19 18 22 22 C 1.54484 * 105.46860 * 197.01424 * 21 20 19 23 23 C 1.54628 * 101.76720 * 334.58388 * 22 21 20 24 24 C 1.34422 * 124.35353 * 269.70585 * 20 19 18 25 25 O 1.21279 * 124.93731 * 359.56751 * 24 20 19 26 26 N 1.36452 * 126.47198 * 180.28321 * 15 5 4 27 27 C 1.46497 * 127.13758 * 0.02562 * 26 15 5 28 28 H 1.09001 * 109.47302 * 64.93608 * 1 2 3 29 29 H 1.08997 * 109.47408 * 184.93916 * 1 2 3 30 30 H 1.09002 * 109.46987 * 304.94110 * 1 2 3 31 31 H 1.09003 * 109.47154 * 64.71752 * 3 2 1 32 32 H 1.09000 * 109.46821 * 304.71981 * 3 2 1 33 33 H 1.09000 * 109.46680 * 309.13649 * 4 3 2 34 34 H 1.09002 * 109.46926 * 189.13945 * 4 3 2 35 35 H 1.09000 * 109.47305 * 62.62132 * 6 5 4 36 36 H 1.09000 * 109.47020 * 182.61650 * 6 5 4 37 37 H 0.97001 * 120.00011 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46962 * 330.02937 * 19 18 17 39 39 H 1.08997 * 109.47384 * 210.02261 * 19 18 17 40 40 H 1.09000 * 110.24644 * 316.01309 * 21 20 19 41 41 H 1.08999 * 110.24902 * 77.92981 * 21 20 19 42 42 H 1.09005 * 110.96870 * 92.70506 * 22 21 20 43 43 H 1.09006 * 110.96825 * 216.46407 * 22 21 20 44 44 H 1.09004 * 110.48174 * 143.47983 * 23 22 21 45 45 H 1.08998 * 110.48514 * 265.98702 * 23 22 21 46 46 H 1.09005 * 109.46789 * 270.19117 * 27 26 15 47 47 H 1.08998 * 109.47526 * 30.18878 * 27 26 15 48 48 H 1.09000 * 109.47697 * 150.19776 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1866 -0.1187 5 7 3.8810 0.7005 -1.4600 6 6 3.5708 -0.7286 -1.5995 7 6 4.3057 -1.5080 -0.5395 8 1 4.8782 -0.9875 0.2140 9 6 4.2472 -2.8854 -0.5316 10 7 3.4701 -3.5155 -1.3852 11 14 5.2716 -3.8568 0.6917 12 1 5.9612 -2.9196 1.6143 13 1 4.3868 -4.7586 1.4725 14 1 6.2808 -4.6646 -0.0390 15 6 5.2138 0.9497 -1.7465 16 7 6.0841 1.5373 -0.9596 17 7 7.2266 1.6035 -1.5446 18 6 7.1535 1.0671 -2.7297 19 6 8.2770 0.9478 -3.7270 20 7 8.9846 -0.3176 -3.5165 21 6 8.6352 -1.5813 -4.1761 22 6 9.3314 -2.6843 -3.3484 23 6 10.5090 -1.9076 -2.7153 24 6 10.0407 -0.4692 -2.6989 25 8 10.5432 0.4176 -2.0417 26 7 5.8675 0.6358 -2.9023 27 6 5.3079 -0.0271 -4.0828 28 1 -0.3634 0.4353 -0.9309 29 1 -0.3634 -1.0238 0.0885 30 1 -0.3633 0.5886 0.8424 31 1 1.7571 1.8159 0.9293 32 1 1.6233 1.8754 -0.8447 33 1 3.9001 0.4854 0.6298 34 1 3.9856 2.1639 0.0436 35 1 2.4977 -0.8805 -1.4838 36 1 3.8823 -1.0734 -2.5855 37 1 3.4292 -4.4846 -1.3799 38 1 8.9705 1.7782 -3.5941 39 1 7.8698 0.9727 -4.7378 40 1 7.5550 -1.7265 -4.1651 41 1 9.0056 -1.5867 -5.2013 42 1 8.6641 -3.0754 -2.5803 43 1 9.6939 -3.4854 -3.9928 44 1 10.6985 -2.2617 -1.7019 45 1 11.4053 -2.0082 -3.3274 46 1 5.4212 -1.1065 -3.9813 47 1 4.2501 0.2204 -4.1714 48 1 5.8361 0.3113 -4.9743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650291561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:26 Heat of formation + Delta-G solvation = 2.657300 kcal Electronic energy + Delta-G solvation = -31392.732198 eV Core-core repulsion = 27291.374966 eV Total energy + Delta-G solvation = -4101.357232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.86664 -41.26858 -39.49350 -37.75738 -37.50321 -35.89813 -34.71259 -34.22227 -31.34334 -30.57994 -29.07993 -28.48892 -28.01078 -27.25192 -26.96760 -24.64811 -23.60015 -22.84153 -22.01231 -21.35683 -20.39358 -18.87129 -18.21717 -18.00647 -17.52849 -17.36726 -17.29255 -16.95325 -16.60511 -16.32509 -16.06804 -15.71150 -15.38770 -15.18688 -14.80323 -14.67715 -14.62228 -14.15924 -14.04210 -13.71007 -13.47676 -13.37945 -13.28358 -13.19110 -13.01419 -12.78697 -12.69742 -12.50787 -12.40494 -12.35832 -12.20029 -12.02513 -11.92450 -11.68656 -11.25555 -10.99555 -10.90591 -10.66748 -10.57578 -10.28375 -9.89959 -9.08758 -8.20848 -6.29094 0.77761 1.23228 1.28575 1.39769 1.43865 1.55661 1.82756 2.29032 2.33635 2.99629 3.06585 3.13939 3.36495 3.42294 3.59237 3.79285 3.92006 3.99587 4.13505 4.14881 4.21442 4.29696 4.37777 4.45959 4.50461 4.54873 4.59483 4.62255 4.67042 4.68002 4.72365 4.83566 4.89667 4.93659 5.01303 5.05711 5.08218 5.16786 5.22101 5.44766 5.46972 5.72824 5.75287 5.84600 6.06229 6.10710 6.43195 6.51743 6.78748 7.10715 7.36251 7.88628 8.84047 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.004699 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.449268 B = 5957.662620 C = 7238.027478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.076 3.924 4 C 0.073 3.927 5 N -0.449 5.449 6 C 0.201 3.799 7 C -0.539 4.539 8 H 0.028 0.972 9 C 0.038 3.962 10 N -0.904 5.904 11 Si 0.927 3.073 12 H -0.295 1.295 13 H -0.274 1.274 14 H -0.269 1.269 15 C 0.396 3.604 16 N -0.382 5.382 17 N -0.315 5.315 18 C 0.142 3.858 19 C 0.224 3.776 20 N -0.615 5.615 21 C 0.097 3.903 22 C -0.128 4.128 23 C -0.147 4.147 24 C 0.502 3.498 25 O -0.574 6.574 26 N -0.473 5.473 27 C 0.077 3.923 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.265 0.735 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.052 0.948 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.138 0.862 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 2.182 -12.929 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C 0.000 4.000 4 C -0.054 4.054 5 N -0.172 5.172 6 C 0.076 3.924 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.163 4.163 10 N -0.544 5.544 11 Si 0.754 3.246 12 H -0.221 1.221 13 H -0.199 1.199 14 H -0.195 1.195 15 C 0.038 3.962 16 N -0.227 5.227 17 N -0.155 5.155 18 C -0.129 4.129 19 C 0.099 3.901 20 N -0.349 5.349 21 C -0.024 4.024 22 C -0.166 4.166 23 C -0.187 4.187 24 C 0.291 3.709 25 O -0.453 6.453 26 N -0.168 5.168 27 C -0.065 4.065 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.164 0.836 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.071 0.929 43 H 0.149 0.851 44 H 0.109 0.891 45 H 0.155 0.845 46 H 0.091 0.909 47 H 0.109 0.891 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.353 3.273 -11.827 12.721 hybrid contribution -0.128 -1.424 0.889 1.684 sum 3.225 1.848 -10.938 11.553 Atomic orbital electron populations 1.22802 0.80647 1.02693 1.00613 1.88212 1.20531 1.27861 1.95197 1.22496 0.91279 0.85105 1.01164 1.22018 0.95712 1.00096 0.87624 1.59429 1.08122 1.21051 1.28590 1.19968 0.98618 0.77978 0.95795 1.21616 1.30279 0.92275 1.13635 0.95360 1.25241 0.95911 0.98178 0.96924 1.69976 1.38003 1.08844 1.37546 0.86000 0.79546 0.78926 0.80090 1.22102 1.19930 1.19451 1.22941 0.91670 0.96930 0.84677 1.74470 0.96626 1.26855 1.24789 1.73785 1.15955 1.20206 1.05518 1.25597 0.86346 1.02720 0.98190 1.19708 0.88030 0.87004 0.95342 1.48465 1.30659 1.10727 1.45068 1.22459 1.01040 0.80830 0.98104 1.22637 0.95813 0.98176 0.99981 1.22356 1.01416 0.90237 1.04678 1.21756 0.79822 0.91976 0.77304 1.90712 1.61261 1.49162 1.44145 1.46046 1.09190 1.46573 1.14958 1.22340 1.01396 0.97818 0.84924 0.93343 0.90431 0.92702 0.90718 0.91683 0.94276 0.89256 0.91947 0.95244 0.92550 0.87477 0.83626 0.91090 0.86092 0.92916 0.85098 0.89121 0.84458 0.90858 0.89110 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -15.56 7.93 -148.98 -1.18 -16.74 16 3 C 0.08 2.58 6.21 71.98 0.45 3.03 16 4 C 0.07 3.04 4.92 86.30 0.42 3.46 16 5 N -0.45 -19.44 4.72 -710.34 -3.35 -22.79 16 6 C 0.20 9.72 4.57 85.56 0.39 10.11 16 7 C -0.54 -29.83 7.71 25.60 0.20 -29.63 16 8 H 0.03 1.73 6.32 -2.91 -0.02 1.71 16 9 C 0.04 2.11 5.45 84.65 0.46 2.57 16 10 N -0.90 -49.60 13.29 21.44 0.29 -49.32 16 11 Si 0.93 45.02 29.54 68.60 2.03 47.05 16 12 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 15 C 0.40 17.56 6.45 260.11 1.68 19.23 16 16 N -0.38 -18.76 10.99 -58.00 -0.64 -19.40 16 17 N -0.32 -14.73 12.18 -49.53 -0.60 -15.34 16 18 C 0.14 5.19 7.65 137.64 1.05 6.24 16 19 C 0.22 5.65 6.31 85.63 0.54 6.19 16 20 N -0.62 -15.61 2.92 -822.29 -2.40 -18.01 16 21 C 0.10 1.68 7.35 86.83 0.64 2.32 16 22 C -0.13 -2.31 7.18 31.65 0.23 -2.08 16 23 C -0.15 -3.11 6.86 30.59 0.21 -2.90 16 24 C 0.50 15.54 8.02 87.90 0.71 16.24 16 25 O -0.57 -23.61 17.59 -3.03 -0.05 -23.67 16 26 N -0.47 -17.14 3.21 -538.18 -1.73 -18.87 16 27 C 0.08 1.98 9.05 127.77 1.16 3.13 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.93 5.87 -2.39 -0.01 1.91 16 34 H 0.09 3.58 7.43 -2.39 -0.02 3.56 16 35 H 0.06 3.23 5.68 -2.39 -0.01 3.22 16 36 H 0.03 1.43 5.25 -2.39 -0.01 1.41 16 37 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.11 2.87 7.92 -2.39 -0.02 2.85 16 39 H 0.15 2.08 7.26 -2.39 -0.02 2.07 16 40 H 0.07 1.39 7.30 -2.39 -0.02 1.37 16 41 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 2.06 7.14 -2.38 -0.02 2.05 16 47 H 0.09 2.42 7.71 -2.39 -0.02 2.40 16 48 H 0.13 1.92 7.25 -2.39 -0.02 1.90 16 Total: -1.00 -84.42 387.25 2.71 -81.71 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.97 Total: 15.39 kcal Atomic # 6 Polarization: 30.61 SS G_CDS: 9.38 Total: 39.99 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -8.43 Total: -143.72 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.24 Total: -40.41 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -84.42 2.71 -81.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650291561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.363 kcal (2) G-P(sol) polarization free energy of solvation -84.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds