Wall clock time and date at job start Tue Mar 31 2020 21:03:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.35501 * 126.97788 * 2 1
4 4 N 1.30528 * 107.30522 * 180.22764 * 3 2 1
5 5 N 1.28597 * 109.67208 * 359.77730 * 4 3 2
6 6 C 1.30520 * 109.67453 * 359.97438 * 5 4 3
7 7 C 1.50702 * 126.34761 * 179.97438 * 6 5 4
8 8 O 1.42903 * 109.46754 * 90.02940 * 7 6 5
9 9 C 1.42900 * 113.99890 * 180.02562 * 8 7 6
10 10 C 1.50699 * 109.47283 * 179.97438 * 9 8 7
11 11 O 1.21284 * 119.99839 * 0.02562 * 10 9 8
12 12 N 1.34776 * 120.00315 * 179.72461 * 10 9 8
13 13 C 1.46922 * 120.62545 * 354.34147 * 12 10 9
14 14 C 1.52763 * 109.00764 * 233.57910 * 13 12 10
15 15 C 1.53034 * 109.38658 * 305.59273 * 14 13 12
16 16 C 1.53048 * 109.53958 * 61.23465 * 15 14 13
17 17 C 1.46924 * 120.63223 * 174.61798 * 12 10 9
18 18 H 1.08999 * 109.58690 * 246.15899 * 17 12 10
19 19 C 1.52997 * 109.58777 * 6.44061 * 17 12 10
20 20 N 1.46507 * 109.47220 * 293.00148 * 19 17 12
21 21 C 1.36931 * 119.99828 * 185.82133 * 20 19 17
22 22 H 1.08002 * 120.00666 * 0.02562 * 21 20 19
23 23 C 1.38817 * 119.99683 * 179.97438 * 21 20 19
24 24 N 1.31617 * 120.00312 * 359.97438 * 23 21 20
25 25 Si 1.86798 * 120.00006 * 180.02562 * 23 21 20
26 26 H 1.48495 * 109.47319 * 59.99886 * 25 23 21
27 27 H 1.48497 * 109.47478 * 180.02562 * 25 23 21
28 28 H 1.48506 * 109.46804 * 300.00107 * 25 23 21
29 29 H 1.09003 * 109.46909 * 270.15009 * 1 2 3
30 30 H 1.08995 * 109.47550 * 30.15185 * 1 2 3
31 31 H 1.09003 * 109.46738 * 150.15791 * 1 2 3
32 32 H 1.07994 * 126.34545 * 0.02562 * 3 2 1
33 33 H 1.08996 * 109.46846 * 330.03223 * 7 6 5
34 34 H 1.08993 * 109.47523 * 210.02607 * 7 6 5
35 35 H 1.09009 * 109.47196 * 60.00144 * 9 8 7
36 36 H 1.09000 * 109.47344 * 300.00382 * 9 8 7
37 37 H 1.08997 * 109.59422 * 353.41616 * 13 12 10
38 38 H 1.09001 * 109.58895 * 113.84482 * 13 12 10
39 39 H 1.09004 * 109.56619 * 185.55325 * 14 13 12
40 40 H 1.09010 * 109.38183 * 65.51749 * 14 13 12
41 41 H 1.09002 * 109.46086 * 301.21869 * 15 14 13
42 42 H 1.08997 * 109.45260 * 181.25047 * 15 14 13
43 43 H 1.08999 * 109.49647 * 178.68356 * 16 15 14
44 44 H 1.09005 * 109.49449 * 58.58967 * 16 15 14
45 45 H 1.09005 * 109.47256 * 52.99879 * 19 17 12
46 46 H 1.09001 * 109.47180 * 173.00065 * 19 17 12
47 47 H 0.96998 * 119.99373 * 5.82341 * 20 19 17
48 48 H 0.96995 * 120.00326 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2800 1.0825 0.0000
4 7 3.5091 0.6431 -0.0050
5 7 3.5091 -0.6429 -0.0033
6 6 2.2801 -1.0823 0.0033
7 6 1.8477 -2.5260 0.0067
8 8 1.7173 -2.9809 1.3551
9 6 1.3097 -4.3456 1.4712
10 6 1.2054 -4.7165 2.9281
11 8 1.4551 -3.8931 3.7829
12 7 0.8288 -5.9615 3.2814
13 6 0.3979 -6.9300 2.2641
14 6 -0.9747 -7.4787 2.6493
15 6 -0.9154 -8.0436 4.0704
16 6 -0.5472 -6.9270 5.0501
17 6 0.8356 -6.3739 4.6915
18 1 1.5889 -7.1471 4.8424
19 6 1.1543 -5.1677 5.5771
20 7 2.5338 -4.7366 5.3374
21 6 3.0845 -3.7452 6.1048
22 1 2.5021 -3.2814 6.8872
23 6 4.3918 -3.3372 5.8779
24 7 5.1021 -3.9034 4.9255
25 14 5.1433 -1.9853 6.9253
26 1 5.1402 -2.4035 8.3501
27 1 6.5395 -1.7363 6.4850
28 1 4.3474 -0.7408 6.7729
29 1 -0.3633 0.0027 1.0277
30 1 -0.3634 0.8886 -0.5161
31 1 -0.3633 -0.8914 -0.5114
32 1 1.9701 2.1170 0.0004
33 1 2.5937 -3.1299 -0.5099
34 1 0.8886 -2.6193 -0.5025
35 1 2.0448 -4.9870 0.9851
36 1 0.3395 -4.4770 0.9921
37 1 0.3337 -6.4371 1.2940
38 1 1.1147 -7.7496 2.2130
39 1 -1.2597 -8.2693 1.9551
40 1 -1.7102 -6.6752 2.6076
41 1 -0.1626 -8.8305 4.1172
42 1 -1.8883 -8.4555 4.3382
43 1 -0.5280 -7.3249 6.0647
44 1 -1.2863 -6.1284 4.9860
45 1 0.4720 -4.3516 5.3389
46 1 1.0372 -5.4451 6.6248
47 1 3.0570 -5.1534 4.6349
48 1 6.0154 -3.6180 4.7667
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001661958990.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:03:27
Heat of formation + Delta-G solvation = 70.104559 kcal
Electronic energy + Delta-G solvation = -30715.687415 eV
Core-core repulsion = 26617.254915 eV
Total energy + Delta-G solvation = -4098.432500 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.07366 -40.11475 -37.93779 -36.60349 -35.09214 -34.37610 -32.62615 -31.98246
-31.50368 -29.74739 -28.28647 -27.73493 -26.34912 -25.59831 -24.28765 -22.63306
-22.38726 -21.38064 -21.01391 -20.53073 -18.77799 -17.46927 -17.02726 -16.90582
-16.25059 -16.20694 -15.94667 -15.26039 -15.08992 -14.83519 -14.59278 -14.40180
-14.29902 -13.65764 -13.61147 -13.56166 -13.32122 -13.00072 -12.87224 -12.78689
-12.22526 -12.15707 -11.91357 -11.74429 -11.62721 -11.41433 -11.01252 -10.91319
-10.68094 -10.59484 -10.56670 -10.32695 -10.27138 -10.22433 -9.80474 -9.70234
-9.40850 -9.30761 -8.61848 -8.23743 -8.01915 -6.39087 -5.44304 -2.63994
1.65411 2.39681 2.82441 3.22734 3.38149 3.64099 3.69139 3.69907
3.92827 4.34140 4.45312 4.51033 4.68438 4.74181 4.79975 4.82371
4.85460 4.92310 5.06285 5.11582 5.12320 5.17776 5.21754 5.39940
5.44069 5.47542 5.53447 5.62585 5.78453 5.80832 5.81830 5.91645
5.95650 6.01567 6.06948 6.10404 6.15709 6.36668 6.59475 6.69178
6.76082 6.92535 7.08433 7.31807 7.96191 7.97866 8.73392 8.77465
9.02453 9.84762 10.42995 10.76819 11.79467
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.007565 B = 0.004839 C = 0.003201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3700.433547 B = 5784.543100 C = 8745.334535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.470 5.470
3 C 0.150 3.850
4 N -0.295 5.295
5 N -0.265 5.265
6 C 0.180 3.820
7 C 0.151 3.849
8 O -0.346 6.346
9 C 0.054 3.946
10 C 0.462 3.538
11 O -0.412 6.412
12 N -0.617 5.617
13 C 0.112 3.888
14 C -0.134 4.134
15 C -0.117 4.117
16 C -0.127 4.127
17 C 0.145 3.855
18 H 0.068 0.932
19 C 0.161 3.839
20 N -0.692 5.692
21 C -0.215 4.215
22 H 0.063 0.937
23 C -0.016 4.016
24 N -0.933 5.933
25 Si 0.900 3.100
26 H -0.290 1.290
27 H -0.293 1.293
28 H -0.290 1.290
29 H 0.087 0.913
30 H 0.092 0.908
31 H 0.089 0.911
32 H 0.220 0.780
33 H 0.088 0.912
34 H 0.065 0.935
35 H 0.073 0.927
36 H 0.066 0.934
37 H 0.075 0.925
38 H 0.064 0.936
39 H 0.069 0.931
40 H 0.064 0.936
41 H 0.063 0.937
42 H 0.060 0.940
43 H 0.072 0.928
44 H 0.065 0.935
45 H 0.036 0.964
46 H 0.015 0.985
47 H 0.380 0.620
48 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.956 -3.706 -14.534 24.172
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.162 5.162
3 C -0.137 4.137
4 N -0.135 5.135
5 N -0.107 5.107
6 C -0.088 4.088
7 C 0.072 3.928
8 O -0.262 6.262
9 C -0.027 4.027
10 C 0.245 3.755
11 O -0.277 6.277
12 N -0.358 5.358
13 C -0.012 4.012
14 C -0.172 4.172
15 C -0.155 4.155
16 C -0.166 4.166
17 C 0.042 3.958
18 H 0.086 0.914
19 C 0.034 3.966
20 N -0.335 5.335
21 C -0.347 4.347
22 H 0.081 0.919
23 C -0.211 4.211
24 N -0.583 5.583
25 Si 0.733 3.267
26 H -0.217 1.217
27 H -0.219 1.219
28 H -0.217 1.217
29 H 0.105 0.895
30 H 0.110 0.890
31 H 0.107 0.893
32 H 0.236 0.764
33 H 0.106 0.894
34 H 0.083 0.917
35 H 0.091 0.909
36 H 0.084 0.916
37 H 0.093 0.907
38 H 0.082 0.918
39 H 0.088 0.912
40 H 0.083 0.917
41 H 0.082 0.918
42 H 0.079 0.921
43 H 0.091 0.909
44 H 0.084 0.916
45 H 0.053 0.947
46 H 0.033 0.967
47 H 0.214 0.786
48 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -17.234 -2.921 -13.753 22.242
hybrid contribution -0.931 0.550 -0.014 1.081
sum -18.165 -2.371 -13.767 22.916
Atomic orbital electron populations
1.22120 0.75359 1.04765 1.04747 1.46158 1.09249 1.06765 1.54049
1.26452 0.87306 0.94828 1.05082 1.74305 1.18031 1.03269 1.17915
1.74322 1.16851 1.03075 1.16460 1.24300 0.87349 0.91402 1.05717
1.20433 1.00261 0.86076 0.86076 1.88196 1.89219 1.25885 1.22929
1.22274 0.99225 0.84032 0.97129 1.19858 0.82030 0.83723 0.89848
1.91197 1.40667 1.47591 1.48238 1.47724 1.69458 1.11844 1.06795
1.21492 0.95426 0.92899 0.91384 1.21843 0.97453 1.00570 0.97362
1.21491 1.01338 0.98012 0.94663 1.21911 0.97379 0.98167 0.99152
1.21464 0.95752 0.98221 0.80340 0.91382 1.20866 0.89823 0.92274
0.93674 1.42277 1.08135 1.42885 1.40211 1.19036 0.94665 1.11187
1.09795 0.91928 1.24596 0.97160 1.00142 0.99178 1.69611 1.09637
1.45089 1.33933 0.86351 0.78330 0.82569 0.79470 1.21729 1.21871
1.21732 0.89453 0.88967 0.89258 0.76411 0.89428 0.91729 0.90903
0.91624 0.90658 0.91821 0.91220 0.91740 0.91827 0.92082 0.90924
0.91629 0.94654 0.96695 0.78645 0.93898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.50 11.04 59.85 0.66 1.16 16
2 N -0.47 -5.80 3.15 -122.69 -0.39 -6.19 16
3 C 0.15 1.95 12.74 -89.93 -1.15 0.80 16
4 N -0.30 -5.37 12.21 29.69 0.36 -5.00 16
5 N -0.27 -5.23 12.21 32.80 0.40 -4.83 16
6 C 0.18 2.86 7.66 -154.98 -1.19 1.67 16
7 C 0.15 1.99 6.29 36.01 0.23 2.22 16
8 O -0.35 -6.21 9.86 -55.14 -0.54 -6.76 16
9 C 0.05 0.79 4.84 36.01 0.17 0.96 16
10 C 0.46 8.78 7.04 -10.99 -0.08 8.70 16
11 O -0.41 -10.35 10.16 -14.36 -0.15 -10.50 16
12 N -0.62 -9.60 2.98 -165.49 -0.49 -10.09 16
13 C 0.11 1.17 6.30 -3.93 -0.02 1.15 16
14 C -0.13 -1.16 6.06 -26.84 -0.16 -1.33 16
15 C -0.12 -1.13 5.89 -26.69 -0.16 -1.29 16
16 C -0.13 -1.59 5.38 -26.61 -0.14 -1.74 16
17 C 0.15 2.43 2.95 -67.60 -0.20 2.23 16
18 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
19 C 0.16 3.55 4.87 -4.04 -0.02 3.53 16
20 N -0.69 -19.13 3.15 -59.90 -0.19 -19.32 16
21 C -0.21 -6.65 9.69 -15.06 -0.15 -6.80 16
22 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16
23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16
24 N -0.93 -31.05 13.06 55.49 0.72 -30.33 16
25 Si 0.90 25.13 29.55 -169.99 -5.02 20.10 16
26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16
27 H -0.29 -8.21 7.11 56.52 0.40 -7.81 16
28 H -0.29 -8.13 7.11 56.52 0.40 -7.72 16
29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.09 0.45 7.19 -51.93 -0.37 0.08 16
32 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16
33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16
34 H 0.06 0.55 7.21 -51.93 -0.37 0.18 16
35 H 0.07 0.96 8.13 -51.92 -0.42 0.53 16
36 H 0.07 0.67 7.44 -51.93 -0.39 0.29 16
37 H 0.08 0.63 5.96 -51.93 -0.31 0.32 16
38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16
41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
45 H 0.04 0.85 6.49 -51.93 -0.34 0.51 16
46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
47 H 0.38 11.15 6.82 -40.82 -0.28 10.87 16
48 H 0.25 8.19 8.31 -40.82 -0.34 7.86 16
LS Contribution 385.04 15.07 5.80 5.80
Total: -1.00 -43.68 385.04 -9.31 -52.99
By element:
Atomic # 1 Polarization: 10.96 SS G_CDS: -7.52 Total: 3.43 kcal
Atomic # 6 Polarization: 12.98 SS G_CDS: -2.30 Total: 10.68 kcal
Atomic # 7 Polarization: -76.18 SS G_CDS: 0.42 Total: -75.76 kcal
Atomic # 8 Polarization: -16.56 SS G_CDS: -0.69 Total: -17.25 kcal
Atomic # 14 Polarization: 25.13 SS G_CDS: -5.02 Total: 20.10 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -43.68 -9.31 -52.99 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001661958990.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.091 kcal
(2) G-P(sol) polarization free energy of solvation -43.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.416 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds