Wall clock time and date at job start Tue Mar 31 2020 21:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35501 * 126.97788 * 2 1 4 4 N 1.30528 * 107.30522 * 180.22764 * 3 2 1 5 5 N 1.28597 * 109.67208 * 359.77730 * 4 3 2 6 6 C 1.30520 * 109.67453 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.34761 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46754 * 90.02940 * 7 6 5 9 9 C 1.42900 * 113.99890 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47283 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99839 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00315 * 179.72461 * 10 9 8 13 13 C 1.46922 * 120.62545 * 354.34147 * 12 10 9 14 14 C 1.52763 * 109.00764 * 233.57910 * 13 12 10 15 15 C 1.53034 * 109.38658 * 305.59273 * 14 13 12 16 16 C 1.53048 * 109.53958 * 61.23465 * 15 14 13 17 17 C 1.46924 * 120.63223 * 174.61798 * 12 10 9 18 18 H 1.08999 * 109.58690 * 246.15899 * 17 12 10 19 19 C 1.52997 * 109.58777 * 6.44061 * 17 12 10 20 20 N 1.46507 * 109.47220 * 293.00148 * 19 17 12 21 21 C 1.36931 * 119.99828 * 185.82133 * 20 19 17 22 22 H 1.08002 * 120.00666 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99683 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00312 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47319 * 59.99886 * 25 23 21 27 27 H 1.48497 * 109.47478 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46804 * 300.00107 * 25 23 21 29 29 H 1.09003 * 109.46909 * 270.15009 * 1 2 3 30 30 H 1.08995 * 109.47550 * 30.15185 * 1 2 3 31 31 H 1.09003 * 109.46738 * 150.15791 * 1 2 3 32 32 H 1.07994 * 126.34545 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.46846 * 330.03223 * 7 6 5 34 34 H 1.08993 * 109.47523 * 210.02607 * 7 6 5 35 35 H 1.09009 * 109.47196 * 60.00144 * 9 8 7 36 36 H 1.09000 * 109.47344 * 300.00382 * 9 8 7 37 37 H 1.08997 * 109.59422 * 353.41616 * 13 12 10 38 38 H 1.09001 * 109.58895 * 113.84482 * 13 12 10 39 39 H 1.09004 * 109.56619 * 185.55325 * 14 13 12 40 40 H 1.09010 * 109.38183 * 65.51749 * 14 13 12 41 41 H 1.09002 * 109.46086 * 301.21869 * 15 14 13 42 42 H 1.08997 * 109.45260 * 181.25047 * 15 14 13 43 43 H 1.08999 * 109.49647 * 178.68356 * 16 15 14 44 44 H 1.09005 * 109.49449 * 58.58967 * 16 15 14 45 45 H 1.09005 * 109.47256 * 52.99879 * 19 17 12 46 46 H 1.09001 * 109.47180 * 173.00065 * 19 17 12 47 47 H 0.96998 * 119.99373 * 5.82341 * 20 19 17 48 48 H 0.96995 * 120.00326 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6431 -0.0050 5 7 3.5091 -0.6429 -0.0033 6 6 2.2801 -1.0823 0.0033 7 6 1.8477 -2.5260 0.0067 8 8 1.7173 -2.9809 1.3551 9 6 1.3097 -4.3456 1.4712 10 6 1.2054 -4.7165 2.9281 11 8 1.4551 -3.8931 3.7829 12 7 0.8288 -5.9615 3.2814 13 6 0.3979 -6.9300 2.2641 14 6 -0.9747 -7.4787 2.6493 15 6 -0.9154 -8.0436 4.0704 16 6 -0.5472 -6.9270 5.0501 17 6 0.8356 -6.3739 4.6915 18 1 1.5889 -7.1471 4.8424 19 6 1.1543 -5.1677 5.5771 20 7 2.5338 -4.7366 5.3374 21 6 3.0845 -3.7452 6.1048 22 1 2.5021 -3.2814 6.8872 23 6 4.3918 -3.3372 5.8779 24 7 5.1021 -3.9034 4.9255 25 14 5.1433 -1.9853 6.9253 26 1 5.1402 -2.4035 8.3501 27 1 6.5395 -1.7363 6.4850 28 1 4.3474 -0.7408 6.7729 29 1 -0.3633 0.0027 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5114 32 1 1.9701 2.1170 0.0004 33 1 2.5937 -3.1299 -0.5099 34 1 0.8886 -2.6193 -0.5025 35 1 2.0448 -4.9870 0.9851 36 1 0.3395 -4.4770 0.9921 37 1 0.3337 -6.4371 1.2940 38 1 1.1147 -7.7496 2.2130 39 1 -1.2597 -8.2693 1.9551 40 1 -1.7102 -6.6752 2.6076 41 1 -0.1626 -8.8305 4.1172 42 1 -1.8883 -8.4555 4.3382 43 1 -0.5280 -7.3249 6.0647 44 1 -1.2863 -6.1284 4.9860 45 1 0.4720 -4.3516 5.3389 46 1 1.0372 -5.4451 6.6248 47 1 3.0570 -5.1534 4.6349 48 1 6.0154 -3.6180 4.7667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661958990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:27 Heat of formation + Delta-G solvation = 70.104559 kcal Electronic energy + Delta-G solvation = -30715.687415 eV Core-core repulsion = 26617.254915 eV Total energy + Delta-G solvation = -4098.432500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.07366 -40.11475 -37.93779 -36.60349 -35.09214 -34.37610 -32.62615 -31.98246 -31.50368 -29.74739 -28.28647 -27.73493 -26.34912 -25.59831 -24.28765 -22.63306 -22.38726 -21.38064 -21.01391 -20.53073 -18.77799 -17.46927 -17.02726 -16.90582 -16.25059 -16.20694 -15.94667 -15.26039 -15.08992 -14.83519 -14.59278 -14.40180 -14.29902 -13.65764 -13.61147 -13.56166 -13.32122 -13.00072 -12.87224 -12.78689 -12.22526 -12.15707 -11.91357 -11.74429 -11.62721 -11.41433 -11.01252 -10.91319 -10.68094 -10.59484 -10.56670 -10.32695 -10.27138 -10.22433 -9.80474 -9.70234 -9.40850 -9.30761 -8.61848 -8.23743 -8.01915 -6.39087 -5.44304 -2.63994 1.65411 2.39681 2.82441 3.22734 3.38149 3.64099 3.69139 3.69907 3.92827 4.34140 4.45312 4.51033 4.68438 4.74181 4.79975 4.82371 4.85460 4.92310 5.06285 5.11582 5.12320 5.17776 5.21754 5.39940 5.44069 5.47542 5.53447 5.62585 5.78453 5.80832 5.81830 5.91645 5.95650 6.01567 6.06948 6.10404 6.15709 6.36668 6.59475 6.69178 6.76082 6.92535 7.08433 7.31807 7.96191 7.97866 8.73392 8.77465 9.02453 9.84762 10.42995 10.76819 11.79467 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007565 B = 0.004839 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.433547 B = 5784.543100 C = 8745.334535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.470 5.470 3 C 0.150 3.850 4 N -0.295 5.295 5 N -0.265 5.265 6 C 0.180 3.820 7 C 0.151 3.849 8 O -0.346 6.346 9 C 0.054 3.946 10 C 0.462 3.538 11 O -0.412 6.412 12 N -0.617 5.617 13 C 0.112 3.888 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.145 3.855 18 H 0.068 0.932 19 C 0.161 3.839 20 N -0.692 5.692 21 C -0.215 4.215 22 H 0.063 0.937 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.900 3.100 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.290 1.290 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.220 0.780 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.015 0.985 47 H 0.380 0.620 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.956 -3.706 -14.534 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.162 5.162 3 C -0.137 4.137 4 N -0.135 5.135 5 N -0.107 5.107 6 C -0.088 4.088 7 C 0.072 3.928 8 O -0.262 6.262 9 C -0.027 4.027 10 C 0.245 3.755 11 O -0.277 6.277 12 N -0.358 5.358 13 C -0.012 4.012 14 C -0.172 4.172 15 C -0.155 4.155 16 C -0.166 4.166 17 C 0.042 3.958 18 H 0.086 0.914 19 C 0.034 3.966 20 N -0.335 5.335 21 C -0.347 4.347 22 H 0.081 0.919 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.217 1.217 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.033 0.967 47 H 0.214 0.786 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.234 -2.921 -13.753 22.242 hybrid contribution -0.931 0.550 -0.014 1.081 sum -18.165 -2.371 -13.767 22.916 Atomic orbital electron populations 1.22120 0.75359 1.04765 1.04747 1.46158 1.09249 1.06765 1.54049 1.26452 0.87306 0.94828 1.05082 1.74305 1.18031 1.03269 1.17915 1.74322 1.16851 1.03075 1.16460 1.24300 0.87349 0.91402 1.05717 1.20433 1.00261 0.86076 0.86076 1.88196 1.89219 1.25885 1.22929 1.22274 0.99225 0.84032 0.97129 1.19858 0.82030 0.83723 0.89848 1.91197 1.40667 1.47591 1.48238 1.47724 1.69458 1.11844 1.06795 1.21492 0.95426 0.92899 0.91384 1.21843 0.97453 1.00570 0.97362 1.21491 1.01338 0.98012 0.94663 1.21911 0.97379 0.98167 0.99152 1.21464 0.95752 0.98221 0.80340 0.91382 1.20866 0.89823 0.92274 0.93674 1.42277 1.08135 1.42885 1.40211 1.19036 0.94665 1.11187 1.09795 0.91928 1.24596 0.97160 1.00142 0.99178 1.69611 1.09637 1.45089 1.33933 0.86351 0.78330 0.82569 0.79470 1.21729 1.21871 1.21732 0.89453 0.88967 0.89258 0.76411 0.89428 0.91729 0.90903 0.91624 0.90658 0.91821 0.91220 0.91740 0.91827 0.92082 0.90924 0.91629 0.94654 0.96695 0.78645 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.04 59.85 0.66 1.16 16 2 N -0.47 -5.80 3.15 -122.69 -0.39 -6.19 16 3 C 0.15 1.95 12.74 -89.93 -1.15 0.80 16 4 N -0.30 -5.37 12.21 29.69 0.36 -5.00 16 5 N -0.27 -5.23 12.21 32.80 0.40 -4.83 16 6 C 0.18 2.86 7.66 -154.98 -1.19 1.67 16 7 C 0.15 1.99 6.29 36.01 0.23 2.22 16 8 O -0.35 -6.21 9.86 -55.14 -0.54 -6.76 16 9 C 0.05 0.79 4.84 36.01 0.17 0.96 16 10 C 0.46 8.78 7.04 -10.99 -0.08 8.70 16 11 O -0.41 -10.35 10.16 -14.36 -0.15 -10.50 16 12 N -0.62 -9.60 2.98 -165.49 -0.49 -10.09 16 13 C 0.11 1.17 6.30 -3.93 -0.02 1.15 16 14 C -0.13 -1.16 6.06 -26.84 -0.16 -1.33 16 15 C -0.12 -1.13 5.89 -26.69 -0.16 -1.29 16 16 C -0.13 -1.59 5.38 -26.61 -0.14 -1.74 16 17 C 0.15 2.43 2.95 -67.60 -0.20 2.23 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 19 C 0.16 3.55 4.87 -4.04 -0.02 3.53 16 20 N -0.69 -19.13 3.15 -59.90 -0.19 -19.32 16 21 C -0.21 -6.65 9.69 -15.06 -0.15 -6.80 16 22 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 24 N -0.93 -31.05 13.06 55.49 0.72 -30.33 16 25 Si 0.90 25.13 29.55 -169.99 -5.02 20.10 16 26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.29 -8.21 7.11 56.52 0.40 -7.81 16 28 H -0.29 -8.13 7.11 56.52 0.40 -7.72 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.45 7.19 -51.93 -0.37 0.08 16 32 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.55 7.21 -51.93 -0.37 0.18 16 35 H 0.07 0.96 8.13 -51.92 -0.42 0.53 16 36 H 0.07 0.67 7.44 -51.93 -0.39 0.29 16 37 H 0.08 0.63 5.96 -51.93 -0.31 0.32 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.85 6.49 -51.93 -0.34 0.51 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 11.15 6.82 -40.82 -0.28 10.87 16 48 H 0.25 8.19 8.31 -40.82 -0.34 7.86 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -43.68 385.04 -9.31 -52.99 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.52 Total: 3.43 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -2.30 Total: 10.68 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: 0.42 Total: -75.76 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.69 Total: -17.25 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.02 Total: 20.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -43.68 -9.31 -52.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661958990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.091 kcal (2) G-P(sol) polarization free energy of solvation -43.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds