Wall clock time and date at job start Tue Mar 31 2020 21:03:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.35501 * 126.97788 * 2 1
4 4 N 1.30528 * 107.30522 * 180.22764 * 3 2 1
5 5 N 1.28597 * 109.67208 * 359.77730 * 4 3 2
6 6 C 1.30520 * 109.67453 * 359.97438 * 5 4 3
7 7 C 1.50702 * 126.34761 * 179.97438 * 6 5 4
8 8 O 1.42903 * 109.46754 * 90.02940 * 7 6 5
9 9 C 1.42900 * 113.99890 * 180.02562 * 8 7 6
10 10 C 1.50699 * 109.47283 * 179.97438 * 9 8 7
11 11 O 1.21284 * 119.99839 * 0.02562 * 10 9 8
12 12 N 1.34776 * 120.00315 * 179.72461 * 10 9 8
13 13 C 1.46922 * 120.62545 * 354.34147 * 12 10 9
14 14 C 1.52763 * 109.00764 * 233.57910 * 13 12 10
15 15 C 1.53034 * 109.38658 * 305.59273 * 14 13 12
16 16 C 1.53048 * 109.53958 * 61.23465 * 15 14 13
17 17 C 1.46924 * 120.63223 * 174.61798 * 12 10 9
18 18 H 1.08999 * 109.58690 * 246.15899 * 17 12 10
19 19 C 1.52997 * 109.58777 * 6.44061 * 17 12 10
20 20 N 1.46507 * 109.47220 * 293.00148 * 19 17 12
21 21 C 1.36931 * 119.99828 * 185.82133 * 20 19 17
22 22 H 1.08002 * 120.00666 * 0.02562 * 21 20 19
23 23 C 1.38817 * 119.99683 * 179.97438 * 21 20 19
24 24 N 1.31617 * 120.00312 * 359.97438 * 23 21 20
25 25 Si 1.86798 * 120.00006 * 180.02562 * 23 21 20
26 26 H 1.48495 * 109.47319 * 59.99886 * 25 23 21
27 27 H 1.48497 * 109.47478 * 180.02562 * 25 23 21
28 28 H 1.48506 * 109.46804 * 300.00107 * 25 23 21
29 29 H 1.09003 * 109.46909 * 270.15009 * 1 2 3
30 30 H 1.08995 * 109.47550 * 30.15185 * 1 2 3
31 31 H 1.09003 * 109.46738 * 150.15791 * 1 2 3
32 32 H 1.07994 * 126.34545 * 0.02562 * 3 2 1
33 33 H 1.08996 * 109.46846 * 330.03223 * 7 6 5
34 34 H 1.08993 * 109.47523 * 210.02607 * 7 6 5
35 35 H 1.09009 * 109.47196 * 60.00144 * 9 8 7
36 36 H 1.09000 * 109.47344 * 300.00382 * 9 8 7
37 37 H 1.08997 * 109.59422 * 353.41616 * 13 12 10
38 38 H 1.09001 * 109.58895 * 113.84482 * 13 12 10
39 39 H 1.09004 * 109.56619 * 185.55325 * 14 13 12
40 40 H 1.09010 * 109.38183 * 65.51749 * 14 13 12
41 41 H 1.09002 * 109.46086 * 301.21869 * 15 14 13
42 42 H 1.08997 * 109.45260 * 181.25047 * 15 14 13
43 43 H 1.08999 * 109.49647 * 178.68356 * 16 15 14
44 44 H 1.09005 * 109.49449 * 58.58967 * 16 15 14
45 45 H 1.09005 * 109.47256 * 52.99879 * 19 17 12
46 46 H 1.09001 * 109.47180 * 173.00065 * 19 17 12
47 47 H 0.96998 * 119.99373 * 5.82341 * 20 19 17
48 48 H 0.96995 * 120.00326 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2800 1.0825 0.0000
4 7 3.5091 0.6431 -0.0050
5 7 3.5091 -0.6429 -0.0033
6 6 2.2801 -1.0823 0.0033
7 6 1.8477 -2.5260 0.0067
8 8 1.7173 -2.9809 1.3551
9 6 1.3097 -4.3456 1.4712
10 6 1.2054 -4.7165 2.9281
11 8 1.4551 -3.8931 3.7829
12 7 0.8288 -5.9615 3.2814
13 6 0.3979 -6.9300 2.2641
14 6 -0.9747 -7.4787 2.6493
15 6 -0.9154 -8.0436 4.0704
16 6 -0.5472 -6.9270 5.0501
17 6 0.8356 -6.3739 4.6915
18 1 1.5889 -7.1471 4.8424
19 6 1.1543 -5.1677 5.5771
20 7 2.5338 -4.7366 5.3374
21 6 3.0845 -3.7452 6.1048
22 1 2.5021 -3.2814 6.8872
23 6 4.3918 -3.3372 5.8779
24 7 5.1021 -3.9034 4.9255
25 14 5.1433 -1.9853 6.9253
26 1 5.1402 -2.4035 8.3501
27 1 6.5395 -1.7363 6.4850
28 1 4.3474 -0.7408 6.7729
29 1 -0.3633 0.0027 1.0277
30 1 -0.3634 0.8886 -0.5161
31 1 -0.3633 -0.8914 -0.5114
32 1 1.9701 2.1170 0.0004
33 1 2.5937 -3.1299 -0.5099
34 1 0.8886 -2.6193 -0.5025
35 1 2.0448 -4.9870 0.9851
36 1 0.3395 -4.4770 0.9921
37 1 0.3337 -6.4371 1.2940
38 1 1.1147 -7.7496 2.2130
39 1 -1.2597 -8.2693 1.9551
40 1 -1.7102 -6.6752 2.6076
41 1 -0.1626 -8.8305 4.1172
42 1 -1.8883 -8.4555 4.3382
43 1 -0.5280 -7.3249 6.0647
44 1 -1.2863 -6.1284 4.9860
45 1 0.4720 -4.3516 5.3389
46 1 1.0372 -5.4451 6.6248
47 1 3.0570 -5.1534 4.6349
48 1 6.0154 -3.6180 4.7667
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001661958990.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:03:26
Heat of formation + Delta-G solvation = 38.425249 kcal
Electronic energy + Delta-G solvation = -30717.061133 eV
Core-core repulsion = 26617.254915 eV
Total energy + Delta-G solvation = -4099.806218 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-44.14831 -41.44262 -39.09247 -37.87032 -36.32416 -36.01904 -33.95147 -33.58535
-32.63643 -31.51804 -29.41329 -28.51170 -27.64460 -27.02084 -25.66347 -24.28911
-23.42370 -22.85446 -22.05989 -21.57099 -20.08298 -19.15401 -18.34041 -18.02667
-17.57782 -17.28857 -17.04206 -16.68377 -16.40246 -16.19165 -15.93066 -15.58836
-15.35891 -15.22444 -14.98880 -14.61737 -14.44805 -14.32245 -14.05212 -13.70381
-13.57726 -13.53639 -13.13528 -13.06850 -12.89754 -12.78792 -12.71485 -12.56327
-12.20868 -12.02510 -11.86964 -11.69020 -11.44583 -11.42581 -11.30868 -11.15841
-10.89468 -10.76324 -10.49272 -9.77844 -9.42737 -8.58727 -7.86375 -5.03310
0.62207 1.35866 1.42362 1.47224 1.53669 1.70516 1.97976 2.07332
2.58218 2.89932 3.39952 3.48211 3.64283 3.75682 3.82357 3.86928
3.89737 3.94563 4.07089 4.14023 4.18693 4.20192 4.37662 4.38392
4.39107 4.44257 4.52339 4.58935 4.66054 4.68558 4.80232 4.85396
4.88930 5.02875 5.07949 5.07981 5.16888 5.19615 5.28425 5.35732
5.48075 5.56856 5.81921 5.89689 6.04990 6.34405 6.71222 7.41032
7.64634 7.65055 8.22719 8.43776 9.37892
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.007565 B = 0.004839 C = 0.003201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3700.433547 B = 5784.543100 C = 8745.334535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.465 5.465
3 C 0.166 3.834
4 N -0.356 5.356
5 N -0.333 5.333
6 C 0.167 3.833
7 C 0.150 3.850
8 O -0.396 6.396
9 C 0.057 3.943
10 C 0.458 3.542
11 O -0.493 6.493
12 N -0.613 5.613
13 C 0.101 3.899
14 C -0.127 4.127
15 C -0.114 4.114
16 C -0.118 4.118
17 C 0.149 3.851
18 H 0.059 0.941
19 C 0.164 3.836
20 N -0.700 5.700
21 C -0.212 4.212
22 H 0.060 0.940
23 C -0.083 4.083
24 N -0.969 5.969
25 Si 0.961 3.039
26 H -0.270 1.270
27 H -0.297 1.297
28 H -0.294 1.294
29 H 0.080 0.920
30 H 0.130 0.870
31 H 0.112 0.888
32 H 0.269 0.731
33 H 0.090 0.910
34 H 0.121 0.879
35 H 0.089 0.911
36 H 0.122 0.878
37 H 0.104 0.896
38 H 0.071 0.929
39 H 0.104 0.896
40 H 0.065 0.935
41 H 0.066 0.934
42 H 0.083 0.917
43 H 0.077 0.923
44 H 0.060 0.940
45 H 0.016 0.984
46 H 0.012 0.988
47 H 0.367 0.633
48 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.690 -4.963 -16.378 28.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 N -0.156 5.156
3 C -0.122 4.122
4 N -0.195 5.195
5 N -0.174 5.174
6 C -0.103 4.103
7 C 0.072 3.928
8 O -0.314 6.314
9 C -0.022 4.022
10 C 0.244 3.756
11 O -0.364 6.364
12 N -0.352 5.352
13 C -0.021 4.021
14 C -0.165 4.165
15 C -0.152 4.152
16 C -0.157 4.157
17 C 0.045 3.955
18 H 0.077 0.923
19 C 0.038 3.962
20 N -0.341 5.341
21 C -0.345 4.345
22 H 0.078 0.922
23 C -0.274 4.274
24 N -0.622 5.622
25 Si 0.792 3.208
26 H -0.196 1.196
27 H -0.223 1.223
28 H -0.221 1.221
29 H 0.098 0.902
30 H 0.149 0.851
31 H 0.131 0.869
32 H 0.284 0.716
33 H 0.108 0.892
34 H 0.138 0.862
35 H 0.107 0.893
36 H 0.140 0.860
37 H 0.123 0.877
38 H 0.089 0.911
39 H 0.122 0.878
40 H 0.084 0.916
41 H 0.085 0.915
42 H 0.102 0.898
43 H 0.096 0.904
44 H 0.079 0.921
45 H 0.034 0.966
46 H 0.030 0.970
47 H 0.199 0.801
48 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -21.059 -4.250 -15.606 26.554
hybrid contribution 0.018 0.920 0.501 1.048
sum -21.041 -3.329 -15.105 26.115
Atomic orbital electron populations
1.22573 0.71936 1.07949 1.05244 1.46465 1.11124 1.05444 1.52552
1.27361 0.86170 0.96788 1.01875 1.74138 1.21286 1.03201 1.20914
1.74165 1.19844 1.04254 1.19170 1.24798 0.87164 0.93339 1.04976
1.20752 1.03133 0.84455 0.84465 1.88123 1.89963 1.27441 1.25907
1.22384 1.02525 0.83136 0.94110 1.20870 0.79628 0.83631 0.91496
1.91165 1.44499 1.50111 1.50649 1.47905 1.68023 1.11905 1.07340
1.21939 0.96788 0.92223 0.91116 1.21833 0.95883 1.01496 0.97275
1.21505 1.02579 0.96684 0.94397 1.21849 0.94112 0.99094 1.00638
1.21311 0.98194 0.95292 0.80654 0.92290 1.20898 0.86782 0.93822
0.94734 1.42330 1.10034 1.42263 1.39452 1.19384 0.94667 1.11137
1.09287 0.92237 1.25339 0.97974 1.03016 1.01114 1.69782 1.09387
1.46903 1.36081 0.85368 0.76896 0.79630 0.78925 1.19620 1.22297
1.22123 0.90151 0.85137 0.86924 0.71587 0.89157 0.86175 0.89281
0.86007 0.87746 0.91055 0.87814 0.91624 0.91481 0.89796 0.90418
0.92077 0.96585 0.97005 0.80124 0.94874
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.65 11.04 127.77 1.41 2.06 16
2 N -0.47 -10.78 3.15 -542.06 -1.71 -12.48 16
3 C 0.17 4.17 12.74 180.11 2.30 6.47 16
4 N -0.36 -13.43 12.21 -59.98 -0.73 -14.17 16
5 N -0.33 -13.77 12.21 -50.15 -0.61 -14.38 16
6 C 0.17 5.29 7.66 137.98 1.06 6.35 16
7 C 0.15 3.75 6.29 71.24 0.45 4.20 16
8 O -0.40 -14.10 9.86 -129.94 -1.28 -15.38 16
9 C 0.06 1.57 4.84 71.24 0.34 1.91 16
10 C 0.46 17.35 7.04 87.66 0.62 17.96 16
11 O -0.49 -25.84 10.16 15.99 0.16 -25.68 16
12 N -0.61 -18.25 2.98 -795.87 -2.37 -20.62 16
13 C 0.10 1.73 6.30 86.22 0.54 2.27 16
14 C -0.13 -1.59 6.06 30.53 0.19 -1.40 16
15 C -0.11 -1.75 5.89 30.62 0.18 -1.57 16
16 C -0.12 -2.75 5.38 30.67 0.16 -2.58 16
17 C 0.15 4.96 2.95 44.97 0.13 5.09 16
18 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
19 C 0.16 7.53 4.87 86.38 0.42 7.95 16
20 N -0.70 -40.56 3.15 -343.43 -1.08 -41.64 16
21 C -0.21 -13.67 9.69 84.04 0.81 -12.86 16
22 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16
23 C -0.08 -5.51 5.50 84.86 0.47 -5.04 16
24 N -0.97 -67.48 13.06 21.65 0.28 -67.20 16
25 Si 0.96 53.74 29.55 68.60 2.03 55.76 16
26 H -0.27 -14.06 7.11 99.48 0.71 -13.35 16
27 H -0.30 -16.61 7.11 99.48 0.71 -15.91 16
28 H -0.29 -16.40 7.11 99.48 0.71 -15.69 16
29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
30 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16
31 H 0.11 0.64 7.19 -2.39 -0.02 0.62 16
32 H 0.27 3.33 8.06 -2.91 -0.02 3.31 16
33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16
34 H 0.12 1.55 7.21 -2.39 -0.02 1.53 16
35 H 0.09 2.13 8.13 -2.38 -0.02 2.11 16
36 H 0.12 1.88 7.44 -2.39 -0.02 1.87 16
37 H 0.10 1.20 5.96 -2.39 -0.01 1.18 16
38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16
41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
44 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16
45 H 0.02 0.82 6.49 -2.38 -0.02 0.80 16
46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
47 H 0.37 22.67 6.82 -92.71 -0.63 22.04 16
48 H 0.24 16.60 8.31 -92.71 -0.77 15.83 16
Total: -1.00 -107.18 385.04 4.10 -103.07
By element:
Atomic # 1 Polarization: 21.57 SS G_CDS: 0.34 Total: 21.90 kcal
Atomic # 6 Polarization: 21.73 SS G_CDS: 9.08 Total: 30.81 kcal
Atomic # 7 Polarization: -164.27 SS G_CDS: -6.22 Total: -170.49 kcal
Atomic # 8 Polarization: -39.94 SS G_CDS: -1.12 Total: -41.06 kcal
Atomic # 14 Polarization: 53.74 SS G_CDS: 2.03 Total: 55.76 kcal
Total: -107.18 4.10 -103.07 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001661958990.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.498 kcal
(2) G-P(sol) polarization free energy of solvation -107.178 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.320 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.425 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds