Wall clock time and date at job start Tue Mar 31 2020 21:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35501 * 126.97788 * 2 1 4 4 N 1.30528 * 107.30522 * 180.22764 * 3 2 1 5 5 N 1.28597 * 109.67208 * 359.77730 * 4 3 2 6 6 C 1.30520 * 109.67453 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.34761 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46754 * 90.02940 * 7 6 5 9 9 C 1.42900 * 113.99890 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47283 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99839 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00315 * 179.72461 * 10 9 8 13 13 C 1.46922 * 120.62545 * 354.34147 * 12 10 9 14 14 C 1.52763 * 109.00764 * 233.57910 * 13 12 10 15 15 C 1.53034 * 109.38658 * 305.59273 * 14 13 12 16 16 C 1.53048 * 109.53958 * 61.23465 * 15 14 13 17 17 C 1.46924 * 120.63223 * 174.61798 * 12 10 9 18 18 H 1.08999 * 109.58690 * 246.15899 * 17 12 10 19 19 C 1.52997 * 109.58777 * 6.44061 * 17 12 10 20 20 N 1.46507 * 109.47220 * 293.00148 * 19 17 12 21 21 C 1.36931 * 119.99828 * 185.82133 * 20 19 17 22 22 H 1.08002 * 120.00666 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99683 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00312 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47319 * 59.99886 * 25 23 21 27 27 H 1.48497 * 109.47478 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46804 * 300.00107 * 25 23 21 29 29 H 1.09003 * 109.46909 * 270.15009 * 1 2 3 30 30 H 1.08995 * 109.47550 * 30.15185 * 1 2 3 31 31 H 1.09003 * 109.46738 * 150.15791 * 1 2 3 32 32 H 1.07994 * 126.34545 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.46846 * 330.03223 * 7 6 5 34 34 H 1.08993 * 109.47523 * 210.02607 * 7 6 5 35 35 H 1.09009 * 109.47196 * 60.00144 * 9 8 7 36 36 H 1.09000 * 109.47344 * 300.00382 * 9 8 7 37 37 H 1.08997 * 109.59422 * 353.41616 * 13 12 10 38 38 H 1.09001 * 109.58895 * 113.84482 * 13 12 10 39 39 H 1.09004 * 109.56619 * 185.55325 * 14 13 12 40 40 H 1.09010 * 109.38183 * 65.51749 * 14 13 12 41 41 H 1.09002 * 109.46086 * 301.21869 * 15 14 13 42 42 H 1.08997 * 109.45260 * 181.25047 * 15 14 13 43 43 H 1.08999 * 109.49647 * 178.68356 * 16 15 14 44 44 H 1.09005 * 109.49449 * 58.58967 * 16 15 14 45 45 H 1.09005 * 109.47256 * 52.99879 * 19 17 12 46 46 H 1.09001 * 109.47180 * 173.00065 * 19 17 12 47 47 H 0.96998 * 119.99373 * 5.82341 * 20 19 17 48 48 H 0.96995 * 120.00326 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6431 -0.0050 5 7 3.5091 -0.6429 -0.0033 6 6 2.2801 -1.0823 0.0033 7 6 1.8477 -2.5260 0.0067 8 8 1.7173 -2.9809 1.3551 9 6 1.3097 -4.3456 1.4712 10 6 1.2054 -4.7165 2.9281 11 8 1.4551 -3.8931 3.7829 12 7 0.8288 -5.9615 3.2814 13 6 0.3979 -6.9300 2.2641 14 6 -0.9747 -7.4787 2.6493 15 6 -0.9154 -8.0436 4.0704 16 6 -0.5472 -6.9270 5.0501 17 6 0.8356 -6.3739 4.6915 18 1 1.5889 -7.1471 4.8424 19 6 1.1543 -5.1677 5.5771 20 7 2.5338 -4.7366 5.3374 21 6 3.0845 -3.7452 6.1048 22 1 2.5021 -3.2814 6.8872 23 6 4.3918 -3.3372 5.8779 24 7 5.1021 -3.9034 4.9255 25 14 5.1433 -1.9853 6.9253 26 1 5.1402 -2.4035 8.3501 27 1 6.5395 -1.7363 6.4850 28 1 4.3474 -0.7408 6.7729 29 1 -0.3633 0.0027 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5114 32 1 1.9701 2.1170 0.0004 33 1 2.5937 -3.1299 -0.5099 34 1 0.8886 -2.6193 -0.5025 35 1 2.0448 -4.9870 0.9851 36 1 0.3395 -4.4770 0.9921 37 1 0.3337 -6.4371 1.2940 38 1 1.1147 -7.7496 2.2130 39 1 -1.2597 -8.2693 1.9551 40 1 -1.7102 -6.6752 2.6076 41 1 -0.1626 -8.8305 4.1172 42 1 -1.8883 -8.4555 4.3382 43 1 -0.5280 -7.3249 6.0647 44 1 -1.2863 -6.1284 4.9860 45 1 0.4720 -4.3516 5.3389 46 1 1.0372 -5.4451 6.6248 47 1 3.0570 -5.1534 4.6349 48 1 6.0154 -3.6180 4.7667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661958990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:26 Heat of formation + Delta-G solvation = 38.425249 kcal Electronic energy + Delta-G solvation = -30717.061133 eV Core-core repulsion = 26617.254915 eV Total energy + Delta-G solvation = -4099.806218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.14831 -41.44262 -39.09247 -37.87032 -36.32416 -36.01904 -33.95147 -33.58535 -32.63643 -31.51804 -29.41329 -28.51170 -27.64460 -27.02084 -25.66347 -24.28911 -23.42370 -22.85446 -22.05989 -21.57099 -20.08298 -19.15401 -18.34041 -18.02667 -17.57782 -17.28857 -17.04206 -16.68377 -16.40246 -16.19165 -15.93066 -15.58836 -15.35891 -15.22444 -14.98880 -14.61737 -14.44805 -14.32245 -14.05212 -13.70381 -13.57726 -13.53639 -13.13528 -13.06850 -12.89754 -12.78792 -12.71485 -12.56327 -12.20868 -12.02510 -11.86964 -11.69020 -11.44583 -11.42581 -11.30868 -11.15841 -10.89468 -10.76324 -10.49272 -9.77844 -9.42737 -8.58727 -7.86375 -5.03310 0.62207 1.35866 1.42362 1.47224 1.53669 1.70516 1.97976 2.07332 2.58218 2.89932 3.39952 3.48211 3.64283 3.75682 3.82357 3.86928 3.89737 3.94563 4.07089 4.14023 4.18693 4.20192 4.37662 4.38392 4.39107 4.44257 4.52339 4.58935 4.66054 4.68558 4.80232 4.85396 4.88930 5.02875 5.07949 5.07981 5.16888 5.19615 5.28425 5.35732 5.48075 5.56856 5.81921 5.89689 6.04990 6.34405 6.71222 7.41032 7.64634 7.65055 8.22719 8.43776 9.37892 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007565 B = 0.004839 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.433547 B = 5784.543100 C = 8745.334535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.465 5.465 3 C 0.166 3.834 4 N -0.356 5.356 5 N -0.333 5.333 6 C 0.167 3.833 7 C 0.150 3.850 8 O -0.396 6.396 9 C 0.057 3.943 10 C 0.458 3.542 11 O -0.493 6.493 12 N -0.613 5.613 13 C 0.101 3.899 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.118 4.118 17 C 0.149 3.851 18 H 0.059 0.941 19 C 0.164 3.836 20 N -0.700 5.700 21 C -0.212 4.212 22 H 0.060 0.940 23 C -0.083 4.083 24 N -0.969 5.969 25 Si 0.961 3.039 26 H -0.270 1.270 27 H -0.297 1.297 28 H -0.294 1.294 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.012 0.988 47 H 0.367 0.633 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.690 -4.963 -16.378 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.156 5.156 3 C -0.122 4.122 4 N -0.195 5.195 5 N -0.174 5.174 6 C -0.103 4.103 7 C 0.072 3.928 8 O -0.314 6.314 9 C -0.022 4.022 10 C 0.244 3.756 11 O -0.364 6.364 12 N -0.352 5.352 13 C -0.021 4.021 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.157 4.157 17 C 0.045 3.955 18 H 0.077 0.923 19 C 0.038 3.962 20 N -0.341 5.341 21 C -0.345 4.345 22 H 0.078 0.922 23 C -0.274 4.274 24 N -0.622 5.622 25 Si 0.792 3.208 26 H -0.196 1.196 27 H -0.223 1.223 28 H -0.221 1.221 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.131 0.869 32 H 0.284 0.716 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.199 0.801 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.059 -4.250 -15.606 26.554 hybrid contribution 0.018 0.920 0.501 1.048 sum -21.041 -3.329 -15.105 26.115 Atomic orbital electron populations 1.22573 0.71936 1.07949 1.05244 1.46465 1.11124 1.05444 1.52552 1.27361 0.86170 0.96788 1.01875 1.74138 1.21286 1.03201 1.20914 1.74165 1.19844 1.04254 1.19170 1.24798 0.87164 0.93339 1.04976 1.20752 1.03133 0.84455 0.84465 1.88123 1.89963 1.27441 1.25907 1.22384 1.02525 0.83136 0.94110 1.20870 0.79628 0.83631 0.91496 1.91165 1.44499 1.50111 1.50649 1.47905 1.68023 1.11905 1.07340 1.21939 0.96788 0.92223 0.91116 1.21833 0.95883 1.01496 0.97275 1.21505 1.02579 0.96684 0.94397 1.21849 0.94112 0.99094 1.00638 1.21311 0.98194 0.95292 0.80654 0.92290 1.20898 0.86782 0.93822 0.94734 1.42330 1.10034 1.42263 1.39452 1.19384 0.94667 1.11137 1.09287 0.92237 1.25339 0.97974 1.03016 1.01114 1.69782 1.09387 1.46903 1.36081 0.85368 0.76896 0.79630 0.78925 1.19620 1.22297 1.22123 0.90151 0.85137 0.86924 0.71587 0.89157 0.86175 0.89281 0.86007 0.87746 0.91055 0.87814 0.91624 0.91481 0.89796 0.90418 0.92077 0.96585 0.97005 0.80124 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 11.04 127.77 1.41 2.06 16 2 N -0.47 -10.78 3.15 -542.06 -1.71 -12.48 16 3 C 0.17 4.17 12.74 180.11 2.30 6.47 16 4 N -0.36 -13.43 12.21 -59.98 -0.73 -14.17 16 5 N -0.33 -13.77 12.21 -50.15 -0.61 -14.38 16 6 C 0.17 5.29 7.66 137.98 1.06 6.35 16 7 C 0.15 3.75 6.29 71.24 0.45 4.20 16 8 O -0.40 -14.10 9.86 -129.94 -1.28 -15.38 16 9 C 0.06 1.57 4.84 71.24 0.34 1.91 16 10 C 0.46 17.35 7.04 87.66 0.62 17.96 16 11 O -0.49 -25.84 10.16 15.99 0.16 -25.68 16 12 N -0.61 -18.25 2.98 -795.87 -2.37 -20.62 16 13 C 0.10 1.73 6.30 86.22 0.54 2.27 16 14 C -0.13 -1.59 6.06 30.53 0.19 -1.40 16 15 C -0.11 -1.75 5.89 30.62 0.18 -1.57 16 16 C -0.12 -2.75 5.38 30.67 0.16 -2.58 16 17 C 0.15 4.96 2.95 44.97 0.13 5.09 16 18 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 19 C 0.16 7.53 4.87 86.38 0.42 7.95 16 20 N -0.70 -40.56 3.15 -343.43 -1.08 -41.64 16 21 C -0.21 -13.67 9.69 84.04 0.81 -12.86 16 22 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.08 -5.51 5.50 84.86 0.47 -5.04 16 24 N -0.97 -67.48 13.06 21.65 0.28 -67.20 16 25 Si 0.96 53.74 29.55 68.60 2.03 55.76 16 26 H -0.27 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.30 -16.61 7.11 99.48 0.71 -15.91 16 28 H -0.29 -16.40 7.11 99.48 0.71 -15.69 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 0.64 7.19 -2.39 -0.02 0.62 16 32 H 0.27 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.12 1.55 7.21 -2.39 -0.02 1.53 16 35 H 0.09 2.13 8.13 -2.38 -0.02 2.11 16 36 H 0.12 1.88 7.44 -2.39 -0.02 1.87 16 37 H 0.10 1.20 5.96 -2.39 -0.01 1.18 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.02 0.82 6.49 -2.38 -0.02 0.80 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.37 22.67 6.82 -92.71 -0.63 22.04 16 48 H 0.24 16.60 8.31 -92.71 -0.77 15.83 16 Total: -1.00 -107.18 385.04 4.10 -103.07 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.34 Total: 21.90 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 9.08 Total: 30.81 kcal Atomic # 7 Polarization: -164.27 SS G_CDS: -6.22 Total: -170.49 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.12 Total: -41.06 kcal Atomic # 14 Polarization: 53.74 SS G_CDS: 2.03 Total: 55.76 kcal Total: -107.18 4.10 -103.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661958990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.498 kcal (2) G-P(sol) polarization free energy of solvation -107.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds