Wall clock time and date at job start Tue Mar 31 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46894 * 109.47069 * 2 1 4 4 C 1.46894 * 111.00187 * 76.02817 * 3 2 1 5 5 C 1.52999 * 109.47182 * 199.54382 * 4 3 2 6 6 N 1.46503 * 109.47190 * 174.88352 * 5 4 3 7 7 C 1.34781 * 120.00280 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99544 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00250 * 180.02562 * 7 6 5 10 10 C 1.50692 * 109.47412 * 180.02562 * 9 7 6 11 11 C 1.39873 * 126.04166 * 89.97032 * 10 9 7 12 12 N 1.30835 * 108.20500 * 180.28547 * 11 10 9 13 13 N 1.40088 * 108.20117 * 359.59468 * 12 11 10 14 14 C 1.46511 * 126.03324 * 180.16691 * 13 12 11 15 15 C 1.34944 * 107.92859 * 0.41260 * 13 12 11 16 16 C 1.46904 * 111.00048 * 199.98027 * 3 2 1 17 17 C 1.50709 * 109.47019 * 66.04473 * 16 3 2 18 18 O 1.21297 * 119.99812 * 0.02562 * 17 16 3 19 19 N 1.34774 * 119.99817 * 180.02562 * 17 16 3 20 20 C 1.37094 * 119.99734 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00079 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00056 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99957 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47294 * 90.00100 * 24 22 20 26 26 H 1.48501 * 109.46523 * 209.99949 * 24 22 20 27 27 H 1.48492 * 109.47146 * 329.99549 * 24 22 20 28 28 H 1.08995 * 109.46916 * 174.87105 * 1 2 3 29 29 H 1.09002 * 109.47195 * 294.87429 * 1 2 3 30 30 H 1.09004 * 109.46756 * 54.87009 * 1 2 3 31 31 H 1.09004 * 109.46523 * 239.99836 * 2 1 3 32 32 H 1.08995 * 109.46719 * 120.00076 * 2 1 3 33 33 H 1.09002 * 109.47549 * 79.54355 * 4 3 2 34 34 H 1.08998 * 109.46924 * 319.54160 * 4 3 2 35 35 H 1.09000 * 109.47543 * 54.88926 * 5 4 3 36 36 H 1.08996 * 109.47336 * 294.88223 * 5 4 3 37 37 H 0.97003 * 119.99913 * 0.02562 * 6 5 4 38 38 H 1.09005 * 109.47061 * 59.99830 * 9 7 6 39 39 H 1.09007 * 109.47187 * 300.00003 * 9 7 6 40 40 H 1.07997 * 125.89355 * 0.02949 * 11 10 9 41 41 H 1.09000 * 109.46557 * 270.29105 * 14 13 12 42 42 H 1.08997 * 109.47056 * 30.29113 * 14 13 12 43 43 H 1.08994 * 109.46481 * 150.29073 * 14 13 12 44 44 H 1.07999 * 126.12512 * 179.71951 * 15 13 12 45 45 H 1.08999 * 109.47070 * 186.04548 * 16 3 2 46 46 H 1.09002 * 109.46931 * 306.05013 * 16 3 2 47 47 H 0.96996 * 119.99870 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9280 3.5157 1.2035 6 7 1.6699 4.1228 2.5116 7 6 1.6607 5.4642 2.6421 8 8 1.8657 6.1687 1.6764 9 6 1.3958 6.0887 3.9877 10 6 1.4399 7.5898 3.8624 11 6 0.3558 8.4233 3.5688 12 7 0.7862 9.6585 3.5390 13 7 2.1581 9.6508 3.8224 14 6 3.0302 10.8260 3.8928 15 6 2.5356 8.3694 4.0135 16 6 3.4104 1.4517 -0.4686 17 6 3.4713 1.0498 -1.9199 18 8 2.4559 0.7389 -2.5062 19 7 4.6539 1.0359 -2.5662 20 6 4.7093 0.6699 -3.8862 21 1 3.8053 0.3930 -4.4082 22 6 5.9286 0.6550 -4.5524 23 7 7.0285 0.9923 -3.9173 24 14 6.0040 0.1569 -6.3512 25 1 5.8340 1.3596 -7.2054 26 1 7.3194 -0.4708 -6.6362 27 1 4.9189 -0.8142 -6.6418 28 1 -0.3633 -1.0235 -0.0919 29 1 -0.3634 0.4323 0.9323 30 1 -0.3633 0.5914 -0.8405 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7005 1.6561 1.9689 34 1 0.9320 1.6917 1.7708 35 1 1.1679 3.8437 0.4945 36 1 2.9121 3.8218 0.8488 37 1 1.5063 3.5593 3.2841 38 1 2.1559 5.7604 4.6966 39 1 0.4116 5.7829 4.3428 40 1 -0.6602 8.1023 3.3926 41 1 3.4489 11.0273 2.9068 42 1 2.4520 11.6881 4.2250 43 1 3.8385 10.6366 4.5991 44 1 3.5335 8.0274 4.2450 45 1 3.7827 2.4701 -0.3577 46 1 4.0258 0.7733 0.1223 47 1 5.4658 1.2842 -2.0971 48 1 7.8798 0.9816 -4.3822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663364140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:32 Heat of formation + Delta-G solvation = 14.777427 kcal Electronic energy + Delta-G solvation = -28203.333350 eV Core-core repulsion = 24102.501686 eV Total energy + Delta-G solvation = -4100.831664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44747 -39.58696 -38.70846 -36.86488 -34.69221 -33.87544 -33.79140 -32.09337 -31.32875 -30.79543 -29.44851 -28.32945 -26.46844 -25.64692 -24.17339 -22.65022 -21.33860 -21.17508 -20.86640 -20.00888 -19.13452 -17.84336 -17.27736 -17.02489 -16.28149 -15.89254 -15.70365 -15.57274 -15.11969 -14.74817 -14.61799 -14.47719 -14.04219 -13.99880 -13.76205 -13.62980 -13.51990 -13.16486 -13.12468 -12.81212 -12.66092 -12.41205 -12.15678 -12.03805 -11.68581 -11.53290 -11.45859 -11.39984 -11.09709 -10.81978 -10.75416 -10.50468 -10.37377 -10.19341 -9.92618 -9.61734 -9.44112 -9.06978 -8.60572 -8.40638 -7.96547 -7.89100 -6.39191 -3.79727 1.67514 2.29364 2.50298 2.64652 3.18659 3.19928 3.28346 3.34111 3.92863 4.08099 4.22739 4.28567 4.56625 4.70603 4.80283 4.83573 4.86170 4.97845 5.02413 5.07217 5.08299 5.18300 5.27509 5.35848 5.38118 5.45469 5.55296 5.60660 5.80919 5.83640 5.86090 5.89213 5.94709 6.02248 6.15338 6.29757 6.38806 6.41482 6.47797 6.58010 6.76036 7.28208 7.35586 7.46212 7.48063 7.57751 8.08981 8.23144 8.64451 9.20798 9.57306 10.09047 10.78648 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.002035 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.007473 B =13753.587486 C =15534.955208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.122 3.878 6 N -0.733 5.733 7 C 0.508 3.492 8 O -0.528 6.528 9 C -0.058 4.058 10 C -0.222 4.222 11 C 0.064 3.936 12 N -0.300 5.300 13 N -0.377 5.377 14 C 0.102 3.898 15 C 0.070 3.930 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.022 0.978 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.181 0.819 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.172 0.828 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 10.253 23.327 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.237 5.237 4 C -0.084 4.084 5 C -0.002 4.002 6 N -0.386 5.386 7 C 0.293 3.707 8 O -0.403 6.403 9 C -0.099 4.099 10 C -0.234 4.234 11 C -0.123 4.123 12 N -0.121 5.121 13 N -0.159 5.159 14 C -0.039 4.039 15 C -0.077 4.077 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.198 0.802 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.189 0.811 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.224 12.206 21.623 26.157 hybrid contribution 1.493 -1.650 0.381 2.257 sum -6.731 10.556 22.004 25.316 Atomic orbital electron populations 1.21692 0.95263 1.01067 1.01600 1.22162 0.96017 0.87924 1.01335 1.61442 1.19987 1.19527 1.22729 1.22253 1.01385 0.93765 0.90992 1.21321 1.02518 0.92065 0.84326 1.45979 1.73820 1.06817 1.12017 1.20750 0.76882 0.81817 0.91222 1.90752 1.47520 1.61448 1.40553 1.19875 1.04342 0.90820 0.94871 1.19394 0.93258 0.94844 1.15918 1.23716 0.99929 0.89920 0.98717 1.77342 0.89660 1.21626 1.23440 1.48394 1.07094 1.05963 1.54421 1.21854 0.92675 0.86107 1.03301 1.22246 0.99773 0.84350 1.01315 1.21943 0.88974 1.01902 0.96046 1.19715 0.84559 0.84884 0.87938 1.90510 1.34057 1.53161 1.68201 1.41870 1.07444 1.59494 1.11368 1.19692 0.95101 1.41818 0.86063 0.87906 1.25261 0.94821 0.97560 1.00382 1.69614 0.98703 1.48560 1.37521 0.85861 0.77520 0.78823 0.82107 1.20400 1.20989 1.19445 0.92870 0.93897 0.91390 0.88499 0.95959 0.94407 0.90244 0.90331 0.91464 0.76938 0.88483 0.88145 0.80215 0.90661 0.89352 0.89496 0.81127 0.89313 0.93430 0.77535 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.96 37.16 0.37 -1.51 16 2 C 0.05 0.83 5.18 -3.82 -0.02 0.81 16 3 N -0.51 -8.22 4.10 -236.07 -0.97 -9.18 16 4 C 0.04 0.52 4.92 -3.83 -0.02 0.50 16 5 C 0.12 1.52 5.70 -4.04 -0.02 1.50 16 6 N -0.73 -6.84 5.56 -60.29 -0.33 -7.18 16 7 C 0.51 5.65 7.82 -10.98 -0.09 5.57 16 8 O -0.53 -8.74 16.03 5.56 0.09 -8.65 16 9 C -0.06 -0.41 6.18 -29.04 -0.18 -0.59 16 10 C -0.22 -2.18 4.59 -105.06 -0.48 -2.66 16 11 C 0.06 0.69 11.96 -17.36 -0.21 0.48 16 12 N -0.30 -3.68 12.58 30.62 0.39 -3.30 16 13 N -0.38 -3.77 4.01 -68.16 -0.27 -4.05 16 14 C 0.10 0.58 11.47 59.85 0.69 1.27 16 15 C 0.07 0.64 11.40 -17.22 -0.20 0.45 16 16 C 0.04 0.76 5.28 -4.97 -0.03 0.73 16 17 C 0.44 10.46 7.29 -10.98 -0.08 10.38 16 18 O -0.58 -15.38 14.12 5.54 0.08 -15.30 16 19 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 24 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.49 6.91 -51.93 -0.36 0.13 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.87 5.86 -51.93 -0.30 1.57 16 32 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 33 H 0.04 0.39 8.00 -51.93 -0.42 -0.02 16 34 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.96 6.95 -51.93 -0.36 0.60 16 37 H 0.40 2.27 8.47 -40.82 -0.35 1.92 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.18 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.09 1.48 6.71 -51.93 -0.35 1.13 16 46 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -37.51 402.77 -7.19 -44.70 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.37 Total: 10.22 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.50 Total: 8.92 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.53 Total: -62.22 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.51 -7.19 -44.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663364140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.473 kcal (2) G-P(sol) polarization free energy of solvation -37.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds