Wall clock time and date at job start Tue Mar 31 2020 20:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46894 * 109.47069 * 2 1 4 4 C 1.46894 * 111.00187 * 76.02817 * 3 2 1 5 5 C 1.52999 * 109.47182 * 199.54382 * 4 3 2 6 6 N 1.46503 * 109.47190 * 174.88352 * 5 4 3 7 7 C 1.34781 * 120.00280 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99544 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00250 * 180.02562 * 7 6 5 10 10 C 1.50692 * 109.47412 * 180.02562 * 9 7 6 11 11 C 1.39873 * 126.04166 * 89.97032 * 10 9 7 12 12 N 1.30835 * 108.20500 * 180.28547 * 11 10 9 13 13 N 1.40088 * 108.20117 * 359.59468 * 12 11 10 14 14 C 1.46511 * 126.03324 * 180.16691 * 13 12 11 15 15 C 1.34944 * 107.92859 * 0.41260 * 13 12 11 16 16 C 1.46904 * 111.00048 * 199.98027 * 3 2 1 17 17 C 1.50709 * 109.47019 * 66.04473 * 16 3 2 18 18 O 1.21297 * 119.99812 * 0.02562 * 17 16 3 19 19 N 1.34774 * 119.99817 * 180.02562 * 17 16 3 20 20 C 1.37094 * 119.99734 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00079 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00056 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99957 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47294 * 90.00100 * 24 22 20 26 26 H 1.48501 * 109.46523 * 209.99949 * 24 22 20 27 27 H 1.48492 * 109.47146 * 329.99549 * 24 22 20 28 28 H 1.08995 * 109.46916 * 174.87105 * 1 2 3 29 29 H 1.09002 * 109.47195 * 294.87429 * 1 2 3 30 30 H 1.09004 * 109.46756 * 54.87009 * 1 2 3 31 31 H 1.09004 * 109.46523 * 239.99836 * 2 1 3 32 32 H 1.08995 * 109.46719 * 120.00076 * 2 1 3 33 33 H 1.09002 * 109.47549 * 79.54355 * 4 3 2 34 34 H 1.08998 * 109.46924 * 319.54160 * 4 3 2 35 35 H 1.09000 * 109.47543 * 54.88926 * 5 4 3 36 36 H 1.08996 * 109.47336 * 294.88223 * 5 4 3 37 37 H 0.97003 * 119.99913 * 0.02562 * 6 5 4 38 38 H 1.09005 * 109.47061 * 59.99830 * 9 7 6 39 39 H 1.09007 * 109.47187 * 300.00003 * 9 7 6 40 40 H 1.07997 * 125.89355 * 0.02949 * 11 10 9 41 41 H 1.09000 * 109.46557 * 270.29105 * 14 13 12 42 42 H 1.08997 * 109.47056 * 30.29113 * 14 13 12 43 43 H 1.08994 * 109.46481 * 150.29073 * 14 13 12 44 44 H 1.07999 * 126.12512 * 179.71951 * 15 13 12 45 45 H 1.08999 * 109.47070 * 186.04548 * 16 3 2 46 46 H 1.09002 * 109.46931 * 306.05013 * 16 3 2 47 47 H 0.96996 * 119.99870 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9280 3.5157 1.2035 6 7 1.6699 4.1228 2.5116 7 6 1.6607 5.4642 2.6421 8 8 1.8657 6.1687 1.6764 9 6 1.3958 6.0887 3.9877 10 6 1.4399 7.5898 3.8624 11 6 0.3558 8.4233 3.5688 12 7 0.7862 9.6585 3.5390 13 7 2.1581 9.6508 3.8224 14 6 3.0302 10.8260 3.8928 15 6 2.5356 8.3694 4.0135 16 6 3.4104 1.4517 -0.4686 17 6 3.4713 1.0498 -1.9199 18 8 2.4559 0.7389 -2.5062 19 7 4.6539 1.0359 -2.5662 20 6 4.7093 0.6699 -3.8862 21 1 3.8053 0.3930 -4.4082 22 6 5.9286 0.6550 -4.5524 23 7 7.0285 0.9923 -3.9173 24 14 6.0040 0.1569 -6.3512 25 1 5.8340 1.3596 -7.2054 26 1 7.3194 -0.4708 -6.6362 27 1 4.9189 -0.8142 -6.6418 28 1 -0.3633 -1.0235 -0.0919 29 1 -0.3634 0.4323 0.9323 30 1 -0.3633 0.5914 -0.8405 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7005 1.6561 1.9689 34 1 0.9320 1.6917 1.7708 35 1 1.1679 3.8437 0.4945 36 1 2.9121 3.8218 0.8488 37 1 1.5063 3.5593 3.2841 38 1 2.1559 5.7604 4.6966 39 1 0.4116 5.7829 4.3428 40 1 -0.6602 8.1023 3.3926 41 1 3.4489 11.0273 2.9068 42 1 2.4520 11.6881 4.2250 43 1 3.8385 10.6366 4.5991 44 1 3.5335 8.0274 4.2450 45 1 3.7827 2.4701 -0.3577 46 1 4.0258 0.7733 0.1223 47 1 5.4658 1.2842 -2.0971 48 1 7.8798 0.9816 -4.3822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663364140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:30 Heat of formation + Delta-G solvation = -15.403410 kcal Electronic energy + Delta-G solvation = -28204.642089 eV Core-core repulsion = 24102.501686 eV Total energy + Delta-G solvation = -4102.140403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13412 -40.63489 -40.23681 -38.30918 -35.99050 -35.52888 -34.51250 -33.30150 -32.81157 -31.99574 -30.54960 -29.09044 -27.75623 -26.59308 -25.82925 -23.68633 -22.25196 -22.02228 -21.84244 -20.98614 -20.71012 -19.85829 -18.13559 -17.85558 -17.64570 -17.01497 -16.83327 -16.46765 -16.26340 -16.18551 -15.96495 -15.55670 -15.38144 -15.35046 -14.99967 -14.74073 -14.27995 -14.12591 -14.00517 -13.85698 -13.64642 -13.42815 -13.40976 -13.16178 -12.99636 -12.81625 -12.69911 -12.58465 -12.47505 -12.41445 -12.13648 -11.97089 -11.72955 -11.51567 -11.40043 -10.88375 -10.33943 -10.24836 -9.99794 -9.98558 -9.29002 -9.19684 -8.46085 -5.94316 0.99124 1.37371 1.40651 1.53366 1.69776 1.78380 1.81927 2.07019 2.25963 2.36756 2.96369 3.21005 3.40689 3.68177 3.93546 4.01899 4.05467 4.12972 4.19561 4.29214 4.32514 4.40761 4.42269 4.42608 4.49784 4.55339 4.60078 4.63838 4.67954 4.75071 4.85273 4.88055 4.92806 4.96587 5.12039 5.22026 5.25369 5.41304 5.44559 5.52709 5.73194 5.91505 6.11106 6.18015 6.25770 6.61619 6.73382 6.76405 7.13994 7.45867 7.57854 8.13889 8.71524 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.002035 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.007473 B =13753.587486 C =15534.955208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.054 3.946 5 C 0.129 3.871 6 N -0.714 5.714 7 C 0.506 3.494 8 O -0.590 6.590 9 C -0.045 4.045 10 C -0.239 4.239 11 C 0.047 3.953 12 N -0.344 5.344 13 N -0.385 5.385 14 C 0.093 3.907 15 C 0.064 3.936 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.420 0.580 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.193 0.807 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.201 0.799 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 9.529 26.050 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 N -0.262 5.262 4 C -0.074 4.074 5 C 0.004 3.996 6 N -0.368 5.368 7 C 0.294 3.706 8 O -0.470 6.470 9 C -0.086 4.086 10 C -0.251 4.251 11 C -0.139 4.139 12 N -0.166 5.166 13 N -0.167 5.167 14 C -0.047 4.047 15 C -0.083 4.083 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.257 0.743 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.210 0.790 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.218 0.782 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.776 11.464 24.415 28.071 hybrid contribution 1.320 -1.393 -0.422 1.964 sum -6.456 10.071 23.993 26.810 Atomic orbital electron populations 1.21639 0.93818 1.01628 1.01851 1.22089 0.97195 0.87576 1.00459 1.61355 1.18722 1.20223 1.25871 1.22263 1.03738 0.92344 0.89007 1.21027 1.00244 0.92978 0.85323 1.45760 1.72773 1.06705 1.11593 1.21536 0.75305 0.81797 0.92008 1.90736 1.50465 1.62867 1.42936 1.19944 1.07134 0.88772 0.92749 1.19783 0.92984 0.96301 1.16055 1.24112 1.01121 0.90052 0.98579 1.77250 0.91425 1.22772 1.25147 1.48757 1.06692 1.07327 1.53925 1.22152 0.93025 0.85292 1.04218 1.22850 1.00985 0.84115 1.00320 1.21768 0.90970 1.02769 0.91921 1.20803 0.83306 0.82891 0.90205 1.90484 1.35183 1.54194 1.69845 1.41951 1.08293 1.60298 1.10911 1.19642 0.94841 1.43860 0.87610 0.90354 1.26037 0.94134 0.97025 1.04277 1.69675 0.99073 1.48576 1.38975 0.84939 0.77872 0.78487 0.77113 1.19908 1.19432 1.19687 0.91610 0.90882 0.94392 0.93003 0.93034 0.91748 0.87696 0.93529 0.93614 0.74257 0.84935 0.85247 0.79015 0.90741 0.89035 0.86348 0.78218 0.88216 0.90987 0.77144 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.96 71.98 0.72 -2.64 16 2 C 0.05 1.61 5.18 86.31 0.45 2.06 16 3 N -0.54 -16.50 4.10 -900.79 -3.69 -20.19 16 4 C 0.05 1.09 4.92 86.30 0.42 1.52 16 5 C 0.13 3.06 5.70 86.38 0.49 3.55 16 6 N -0.71 -11.36 5.56 -463.06 -2.57 -13.93 16 7 C 0.51 10.33 7.82 87.66 0.69 11.01 16 8 O -0.59 -19.65 16.03 -3.03 -0.05 -19.70 16 9 C -0.05 -0.50 6.18 29.10 0.18 -0.32 16 10 C -0.24 -4.33 4.59 -20.15 -0.09 -4.42 16 11 C 0.05 1.01 11.96 85.24 1.02 2.03 16 12 N -0.34 -8.57 12.58 -57.02 -0.72 -9.29 16 13 N -0.39 -7.47 4.01 -369.55 -1.48 -8.96 16 14 C 0.09 0.98 11.47 127.76 1.47 2.45 16 15 C 0.06 1.09 11.40 83.54 0.95 2.04 16 16 C 0.06 1.98 5.28 85.56 0.45 2.43 16 17 C 0.44 21.31 7.29 87.66 0.64 21.95 16 18 O -0.61 -34.04 14.12 -3.08 -0.04 -34.09 16 19 N -0.58 -30.24 5.29 -306.97 -1.62 -31.86 16 20 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 23 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 24 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.40 6.91 -2.39 -0.02 1.39 16 30 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 2.03 5.86 -2.38 -0.01 2.01 16 32 H 0.05 1.23 7.99 -2.39 -0.02 1.21 16 33 H 0.06 1.03 8.00 -2.39 -0.02 1.01 16 34 H 0.10 1.62 6.58 -2.39 -0.02 1.61 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.28 6.95 -2.39 -0.02 1.27 16 37 H 0.42 2.91 8.47 -92.71 -0.79 2.13 16 38 H 0.13 0.56 8.14 -2.38 -0.02 0.55 16 39 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.19 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.10 3.26 6.71 -2.39 -0.02 3.24 16 46 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 47 H 0.39 19.72 7.90 -92.71 -0.73 18.99 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -87.12 402.77 0.26 -86.85 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.53 Total: 32.65 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 8.66 Total: 23.00 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -9.81 Total: -134.61 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.09 Total: -53.79 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -87.12 0.26 -86.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663364140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.449 kcal (2) G-P(sol) polarization free energy of solvation -87.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds