Wall clock time and date at job start Tue Mar 31 2020 20:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47639 * 2 1 4 4 C 1.46501 * 119.99980 * 270.00126 * 3 2 1 5 5 C 1.52996 * 109.47160 * 269.99831 * 4 3 2 6 6 N 1.46900 * 109.47336 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99854 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46865 * 179.97438 * 7 6 5 9 9 O 1.21295 * 120.00114 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99889 * 180.02562 * 8 7 6 11 11 C 1.37104 * 119.99729 * 180.02562 * 10 8 7 12 12 H 1.07994 * 120.00108 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99749 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99835 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99906 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46740 * 90.00274 * 15 13 11 17 17 H 1.48502 * 109.46863 * 210.00121 * 15 13 11 18 18 H 1.48496 * 109.47406 * 330.00280 * 15 13 11 19 19 C 1.34779 * 120.00195 * 89.99056 * 3 2 1 20 20 O 1.21277 * 120.00298 * 179.97438 * 19 3 2 21 21 C 1.50699 * 120.00041 * 0.02562 * 19 3 2 22 22 C 1.50696 * 109.47490 * 179.97438 * 21 19 3 23 23 C 1.39866 * 125.89915 * 125.01392 * 22 21 19 24 24 C 1.35320 * 107.91898 * 179.97438 * 23 22 21 25 25 N 1.34951 * 107.74569 * 359.97438 * 24 23 22 26 26 C 1.46504 * 126.03463 * 180.02562 * 25 24 23 27 27 N 1.30844 * 125.89476 * 304.97479 * 22 21 19 28 28 H 1.09010 * 109.47104 * 300.00806 * 1 2 3 29 29 H 1.09001 * 109.47049 * 59.99727 * 1 2 3 30 30 H 1.08997 * 109.47529 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47400 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.47220 * 119.99570 * 2 1 3 33 33 H 1.08998 * 109.46897 * 29.99728 * 4 3 2 34 34 H 1.09001 * 109.46928 * 149.99301 * 4 3 2 35 35 H 1.09003 * 109.46673 * 299.99760 * 5 4 3 36 36 H 1.08996 * 109.47369 * 59.99536 * 5 4 3 37 37 H 1.00893 * 111.00242 * 56.03759 * 6 5 4 38 38 H 1.08992 * 109.47394 * 299.99544 * 7 6 5 39 39 H 1.09000 * 109.47223 * 59.99613 * 7 6 5 40 40 H 0.96995 * 120.00208 * 359.97438 * 10 8 7 41 41 H 0.96998 * 119.99558 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.46974 * 59.99026 * 21 19 3 43 43 H 1.09000 * 109.47028 * 299.99901 * 21 19 3 44 44 H 1.07993 * 126.04141 * 359.97438 * 23 22 21 45 45 H 1.07996 * 126.12765 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.46927 * 270.02579 * 26 25 24 47 47 H 1.08994 * 109.47314 * 30.02415 * 26 25 24 48 48 H 1.08998 * 109.46715 * 150.02896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9526 2.5242 -2.9823 7 6 5.3335 2.3156 -3.4378 8 6 5.5467 3.0392 -4.7425 9 8 4.6376 3.6665 -5.2438 10 7 6.7474 2.9884 -5.3528 11 6 6.9415 3.6471 -6.5395 12 1 6.1323 4.2062 -6.9854 13 6 8.1794 3.5951 -7.1685 14 7 8.3653 4.2261 -8.3062 15 14 9.5793 2.6285 -6.3969 16 1 9.5465 1.2291 -6.8925 17 1 10.8747 3.2540 -6.7653 18 1 9.4293 2.6340 -4.9195 19 6 2.2429 2.0166 1.1672 20 8 2.6477 3.1598 1.1672 21 6 1.9920 1.3062 2.4723 22 6 2.3189 2.2293 3.6178 23 6 1.4572 2.5751 4.6638 24 6 2.1198 3.4208 5.4866 25 7 3.3570 3.6031 4.9794 26 6 4.4088 4.4453 5.5546 27 7 3.4579 2.8450 3.8058 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 4.3883 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.7425 3.5080 -2.9045 38 1 6.0253 2.7030 -2.6900 39 1 5.5120 1.2499 -3.5804 40 1 7.4743 2.4865 -4.9522 41 1 9.2294 4.1895 -8.7454 42 1 2.6224 0.4188 2.5299 43 1 0.9442 1.0117 2.5301 44 1 0.4425 2.2285 4.7922 45 1 1.7288 3.8689 6.3881 46 1 4.3274 5.4546 5.1511 47 1 4.2967 4.4772 6.6383 48 1 5.3847 4.0307 5.3023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668426165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:34 Heat of formation + Delta-G solvation = 20.817328 kcal Electronic energy + Delta-G solvation = -28263.440216 eV Core-core repulsion = 24162.870461 eV Total energy + Delta-G solvation = -4100.569754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48559 -40.03107 -38.42218 -36.57132 -35.32514 -34.16689 -33.83924 -31.69265 -31.45875 -30.78176 -30.09738 -28.82820 -26.51802 -25.62954 -23.83613 -23.60124 -22.23286 -21.44302 -20.42028 -19.36533 -18.91809 -18.26731 -17.43601 -17.24617 -16.47160 -16.10733 -15.71730 -15.55405 -15.47616 -14.86840 -14.46105 -14.23427 -14.12716 -14.11821 -13.88747 -13.75018 -13.41717 -13.21817 -13.03542 -12.90491 -12.82144 -12.63083 -12.45918 -12.38287 -12.18026 -12.08432 -11.83758 -11.58545 -11.43722 -11.16608 -10.98373 -10.80561 -10.56193 -9.96510 -9.93807 -9.53371 -9.47378 -8.92099 -8.82251 -8.52511 -8.15505 -8.09819 -6.27463 -3.78599 1.65153 2.23875 2.40843 2.50087 2.86087 3.06170 3.09985 3.17731 3.78926 4.10578 4.13389 4.22560 4.34891 4.45138 4.56802 4.62607 4.77269 4.82039 4.87828 4.92312 5.02831 5.07675 5.08385 5.10303 5.21077 5.28178 5.35130 5.41716 5.43872 5.50689 5.53934 5.67941 5.72429 5.81541 5.84339 5.89064 5.94449 6.00828 6.31978 6.36637 6.73718 7.12592 7.19195 7.49816 7.61014 7.62904 8.05672 8.18568 8.63973 8.98865 9.46496 9.87176 10.85735 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002010 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.578158 B =13927.767784 C =15334.203914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.613 5.613 4 C 0.119 3.881 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.451 3.549 9 O -0.564 6.564 10 N -0.592 5.592 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.515 3.485 20 O -0.518 6.518 21 C -0.057 4.057 22 C 0.079 3.921 23 C -0.267 4.267 24 C 0.049 3.951 25 N -0.376 5.376 26 C 0.102 3.898 27 N -0.262 5.262 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.352 0.648 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.147 0.853 45 H 0.173 0.827 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 -10.396 31.489 35.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.348 5.348 4 C -0.004 4.004 5 C -0.085 4.085 6 N -0.300 5.300 7 C -0.083 4.083 8 C 0.237 3.763 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.302 3.698 20 O -0.392 6.392 21 C -0.098 4.098 22 C -0.088 4.088 23 C -0.296 4.296 24 C -0.096 4.096 25 N -0.158 5.158 26 C -0.040 4.040 27 N -0.084 5.084 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.203 0.797 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.165 0.835 45 H 0.190 0.810 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.857 -9.472 30.218 34.178 hybrid contribution 0.957 -0.310 1.448 1.763 sum -11.901 -9.782 31.666 35.214 Atomic orbital electron populations 1.22232 0.95665 1.02448 1.02803 1.21635 0.94621 0.82277 1.03634 1.47959 1.66437 1.14511 1.05904 1.21362 0.96324 0.98739 0.83946 1.22264 0.96279 0.99543 0.90373 1.60022 1.23248 1.18511 1.28176 1.21684 0.89572 1.01167 0.95892 1.19711 0.83580 0.85912 0.87112 1.90564 1.41851 1.45430 1.66713 1.42206 1.10870 1.47641 1.22397 1.19439 0.99711 1.27896 0.96205 0.86268 1.25042 0.97552 0.97631 0.96020 1.69625 1.24616 1.42001 1.15985 0.86664 0.82677 0.80729 0.79287 1.19601 1.20209 1.19526 1.20398 0.77604 0.86880 0.84952 1.90766 1.43825 1.17649 1.86978 1.20083 1.04211 0.97106 0.88448 1.21540 0.92351 0.98579 0.96336 1.21318 1.02105 1.07816 0.98400 1.22495 0.86363 1.00263 1.00501 1.48556 1.11252 1.36941 1.19088 1.21857 0.90170 0.93867 0.98088 1.77458 1.22295 1.09186 0.99455 0.92423 0.91892 0.91300 0.89744 0.90281 0.89381 0.89850 0.95062 0.91161 0.82849 0.93737 0.89506 0.79694 0.91657 0.87384 0.87028 0.83534 0.81011 0.90645 0.89524 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.15 0.38 -0.49 16 2 C 0.10 0.61 5.93 -4.05 -0.02 0.58 16 3 N -0.61 -5.99 2.47 -173.69 -0.43 -6.42 16 4 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 5 C 0.05 0.61 6.01 -3.83 -0.02 0.59 16 6 N -0.67 -11.12 6.13 -115.07 -0.70 -11.83 16 7 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 8 C 0.45 10.70 7.82 -10.98 -0.09 10.61 16 9 O -0.56 -15.67 15.78 5.54 0.09 -15.59 16 10 N -0.59 -14.61 5.09 -10.96 -0.06 -14.66 16 11 C -0.30 -8.82 10.16 -14.93 -0.15 -8.98 16 12 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -26.25 13.96 55.50 0.77 -25.48 16 15 Si 0.88 19.86 27.74 -169.99 -4.71 15.14 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 19 C 0.52 6.09 7.66 -10.98 -0.08 6.01 16 20 O -0.52 -8.65 15.14 5.56 0.08 -8.57 16 21 C -0.06 -0.48 4.83 -29.04 -0.14 -0.62 16 22 C 0.08 0.88 6.01 -82.41 -0.50 0.39 16 23 C -0.27 -2.37 10.72 -40.01 -0.43 -2.80 16 24 C 0.05 0.40 11.49 -17.22 -0.20 0.20 16 25 N -0.38 -3.79 4.01 -68.16 -0.27 -4.07 16 26 C 0.10 0.61 11.47 59.85 0.69 1.30 16 27 N -0.26 -3.50 11.92 33.67 0.40 -3.10 16 28 H 0.06 0.28 7.22 -51.92 -0.37 -0.09 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.08 0.32 6.44 -51.93 -0.33 -0.01 16 33 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.35 6.24 8.43 -39.30 -0.33 5.91 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.37 8.05 5.76 -40.82 -0.24 7.82 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.11 0.70 7.40 -51.93 -0.38 0.31 16 43 H 0.11 0.59 7.16 -51.93 -0.37 0.22 16 44 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 403.73 15.07 6.08 6.08 Total: -1.00 -39.76 403.73 -6.92 -46.69 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.46 Total: 11.75 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.71 Total: 10.05 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -0.29 Total: -65.56 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.17 Total: -24.16 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -39.76 -6.92 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668426165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.503 kcal (2) G-P(sol) polarization free energy of solvation -39.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds