Wall clock time and date at job start Tue Mar 31 2020 20:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47639 * 2 1 4 4 C 1.46501 * 119.99980 * 270.00126 * 3 2 1 5 5 C 1.52996 * 109.47160 * 269.99831 * 4 3 2 6 6 N 1.46900 * 109.47336 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99854 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46865 * 179.97438 * 7 6 5 9 9 O 1.21295 * 120.00114 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99889 * 180.02562 * 8 7 6 11 11 C 1.37104 * 119.99729 * 180.02562 * 10 8 7 12 12 H 1.07994 * 120.00108 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99749 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99835 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99906 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46740 * 90.00274 * 15 13 11 17 17 H 1.48502 * 109.46863 * 210.00121 * 15 13 11 18 18 H 1.48496 * 109.47406 * 330.00280 * 15 13 11 19 19 C 1.34779 * 120.00195 * 89.99056 * 3 2 1 20 20 O 1.21277 * 120.00298 * 179.97438 * 19 3 2 21 21 C 1.50699 * 120.00041 * 0.02562 * 19 3 2 22 22 C 1.50696 * 109.47490 * 179.97438 * 21 19 3 23 23 C 1.39866 * 125.89915 * 125.01392 * 22 21 19 24 24 C 1.35320 * 107.91898 * 179.97438 * 23 22 21 25 25 N 1.34951 * 107.74569 * 359.97438 * 24 23 22 26 26 C 1.46504 * 126.03463 * 180.02562 * 25 24 23 27 27 N 1.30844 * 125.89476 * 304.97479 * 22 21 19 28 28 H 1.09010 * 109.47104 * 300.00806 * 1 2 3 29 29 H 1.09001 * 109.47049 * 59.99727 * 1 2 3 30 30 H 1.08997 * 109.47529 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47400 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.47220 * 119.99570 * 2 1 3 33 33 H 1.08998 * 109.46897 * 29.99728 * 4 3 2 34 34 H 1.09001 * 109.46928 * 149.99301 * 4 3 2 35 35 H 1.09003 * 109.46673 * 299.99760 * 5 4 3 36 36 H 1.08996 * 109.47369 * 59.99536 * 5 4 3 37 37 H 1.00893 * 111.00242 * 56.03759 * 6 5 4 38 38 H 1.08992 * 109.47394 * 299.99544 * 7 6 5 39 39 H 1.09000 * 109.47223 * 59.99613 * 7 6 5 40 40 H 0.96995 * 120.00208 * 359.97438 * 10 8 7 41 41 H 0.96998 * 119.99558 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.46974 * 59.99026 * 21 19 3 43 43 H 1.09000 * 109.47028 * 299.99901 * 21 19 3 44 44 H 1.07993 * 126.04141 * 359.97438 * 23 22 21 45 45 H 1.07996 * 126.12765 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.46927 * 270.02579 * 26 25 24 47 47 H 1.08994 * 109.47314 * 30.02415 * 26 25 24 48 48 H 1.08998 * 109.46715 * 150.02896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9526 2.5242 -2.9823 7 6 5.3335 2.3156 -3.4378 8 6 5.5467 3.0392 -4.7425 9 8 4.6376 3.6665 -5.2438 10 7 6.7474 2.9884 -5.3528 11 6 6.9415 3.6471 -6.5395 12 1 6.1323 4.2062 -6.9854 13 6 8.1794 3.5951 -7.1685 14 7 8.3653 4.2261 -8.3062 15 14 9.5793 2.6285 -6.3969 16 1 9.5465 1.2291 -6.8925 17 1 10.8747 3.2540 -6.7653 18 1 9.4293 2.6340 -4.9195 19 6 2.2429 2.0166 1.1672 20 8 2.6477 3.1598 1.1672 21 6 1.9920 1.3062 2.4723 22 6 2.3189 2.2293 3.6178 23 6 1.4572 2.5751 4.6638 24 6 2.1198 3.4208 5.4866 25 7 3.3570 3.6031 4.9794 26 6 4.4088 4.4453 5.5546 27 7 3.4579 2.8450 3.8058 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 4.3883 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.7425 3.5080 -2.9045 38 1 6.0253 2.7030 -2.6900 39 1 5.5120 1.2499 -3.5804 40 1 7.4743 2.4865 -4.9522 41 1 9.2294 4.1895 -8.7454 42 1 2.6224 0.4188 2.5299 43 1 0.9442 1.0117 2.5301 44 1 0.4425 2.2285 4.7922 45 1 1.7288 3.8689 6.3881 46 1 4.3274 5.4546 5.1511 47 1 4.2967 4.4772 6.6383 48 1 5.3847 4.0307 5.3023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668426165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:32 Heat of formation + Delta-G solvation = -11.309400 kcal Electronic energy + Delta-G solvation = -28264.833335 eV Core-core repulsion = 24162.870461 eV Total energy + Delta-G solvation = -4101.962874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.13793 -40.88139 -40.31697 -37.61497 -36.51693 -35.87372 -34.79720 -33.78124 -32.34961 -31.37088 -30.78326 -29.89026 -27.82141 -26.59617 -25.36241 -24.24566 -23.33588 -22.04469 -21.39973 -21.10981 -20.32149 -19.61581 -18.23496 -17.93420 -17.79514 -17.21405 -17.11594 -16.70910 -16.41025 -16.22276 -15.70497 -15.40562 -15.14620 -14.94000 -14.79423 -14.74458 -14.52040 -14.45557 -14.24502 -13.96569 -13.71094 -13.52227 -13.46581 -13.38076 -13.13788 -13.02465 -12.91517 -12.72214 -12.57261 -12.43795 -12.05116 -11.99847 -11.88776 -11.54009 -11.48365 -10.86779 -10.51272 -10.27638 -10.18404 -9.71536 -9.46621 -9.44702 -8.43446 -6.04612 1.01476 1.28890 1.33825 1.42859 1.65184 1.67663 1.75580 1.90905 2.11073 2.21175 2.74719 3.12073 3.39928 3.51493 3.72290 3.90559 4.00210 4.10051 4.12229 4.16026 4.19100 4.32966 4.38164 4.39743 4.45481 4.49925 4.51163 4.54773 4.65546 4.68994 4.80958 4.83143 4.90870 4.92169 5.02047 5.05533 5.16420 5.46791 5.48755 5.57336 5.71934 5.84536 5.96811 6.21984 6.22140 6.43533 6.56634 6.83385 6.84675 7.22503 7.35932 7.91927 8.74138 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002010 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.578158 B =13927.767784 C =15334.203914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.124 3.876 5 C 0.057 3.943 6 N -0.678 5.678 7 C 0.063 3.937 8 C 0.448 3.552 9 O -0.613 6.613 10 N -0.590 5.590 11 C -0.330 4.330 12 H 0.056 0.944 13 C -0.015 4.015 14 N -0.932 5.932 15 Si 0.966 3.034 16 H -0.254 1.254 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.509 3.491 20 O -0.578 6.578 21 C -0.050 4.050 22 C 0.062 3.938 23 C -0.283 4.283 24 C 0.053 3.947 25 N -0.388 5.388 26 C 0.094 3.906 27 N -0.324 5.324 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.093 0.907 37 H 0.341 0.659 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.390 0.610 41 H 0.280 0.720 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.172 0.828 45 H 0.213 0.787 46 H 0.073 0.927 47 H 0.123 0.877 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -13.722 34.893 39.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.001 3.999 5 C -0.073 4.073 6 N -0.311 5.311 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.231 5.231 11 C -0.459 4.459 12 H 0.074 0.926 13 C -0.214 4.214 14 N -0.573 5.573 15 Si 0.786 3.214 16 H -0.178 1.178 17 H -0.199 1.199 18 H -0.158 1.158 19 C 0.298 3.702 20 O -0.456 6.456 21 C -0.091 4.091 22 C -0.105 4.105 23 C -0.312 4.312 24 C -0.093 4.093 25 N -0.171 5.171 26 C -0.046 4.046 27 N -0.147 5.147 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.111 0.889 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.190 0.810 45 H 0.229 0.771 46 H 0.092 0.908 47 H 0.142 0.858 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.582 -12.858 33.641 38.149 hybrid contribution 0.731 0.802 0.363 1.144 sum -11.851 -12.056 34.004 37.975 Atomic orbital electron populations 1.22206 0.94817 1.03607 1.02176 1.21970 0.95294 0.80006 1.05378 1.48051 1.65570 1.15793 1.04564 1.21169 0.95791 0.97630 0.85342 1.22255 0.96696 1.00093 0.88231 1.60066 1.22685 1.18122 1.30190 1.21622 0.90761 1.02059 0.92490 1.20897 0.82373 0.84679 0.88428 1.90542 1.43412 1.47331 1.68468 1.42021 1.12043 1.47762 1.21294 1.19019 0.98985 1.29390 0.98547 0.92624 1.26136 1.00667 0.98402 0.96201 1.69804 1.26011 1.43569 1.17913 0.85350 0.77066 0.78944 0.80073 1.17793 1.19875 1.15849 1.21069 0.76439 0.86328 0.86363 1.90740 1.46670 1.20370 1.87849 1.20219 1.06610 0.96762 0.85520 1.22077 0.92347 0.98665 0.97402 1.21740 1.03163 1.08222 0.98048 1.23220 0.85475 0.99348 1.01271 1.48886 1.12668 1.36984 1.18564 1.22111 0.89237 0.93112 1.00132 1.77354 1.24281 1.11365 1.01701 0.92122 0.93513 0.89191 0.88977 0.87595 0.88248 0.92673 0.96518 0.88873 0.84067 0.91477 0.86160 0.77456 0.91065 0.85201 0.83686 0.81047 0.77065 0.90815 0.85844 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 71.98 0.74 -0.50 16 2 C 0.09 0.84 5.93 86.38 0.51 1.35 16 3 N -0.61 -11.02 2.47 -821.83 -2.03 -13.05 16 4 C 0.12 2.89 5.67 86.38 0.49 3.37 16 5 C 0.06 1.45 6.01 86.30 0.52 1.97 16 6 N -0.68 -22.24 6.13 -517.96 -3.17 -25.41 16 7 C 0.06 2.12 6.17 85.56 0.53 2.65 16 8 C 0.45 21.40 7.82 87.66 0.69 22.08 16 9 O -0.61 -35.57 15.78 -3.08 -0.05 -35.61 16 10 N -0.59 -29.02 5.09 -306.97 -1.56 -30.59 16 11 C -0.33 -19.94 10.16 84.04 0.85 -19.09 16 12 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 13 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 14 N -0.93 -57.24 13.96 21.66 0.30 -56.94 16 15 Si 0.97 39.83 27.74 68.60 1.90 41.74 16 16 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.24 -8.31 6.52 99.48 0.65 -7.66 16 19 C 0.51 11.77 7.66 87.66 0.67 12.44 16 20 O -0.58 -20.06 15.14 -3.02 -0.05 -20.10 16 21 C -0.05 -0.75 4.83 29.10 0.14 -0.61 16 22 C 0.06 1.32 6.01 43.10 0.26 1.58 16 23 C -0.28 -4.52 10.72 21.99 0.24 -4.28 16 24 C 0.05 0.75 11.49 83.54 0.96 1.71 16 25 N -0.39 -7.61 4.01 -369.56 -1.48 -9.09 16 26 C 0.09 1.08 11.47 127.77 1.47 2.54 16 27 N -0.32 -8.76 11.92 -47.39 -0.56 -9.32 16 28 H 0.06 0.42 7.22 -2.38 -0.02 0.40 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.73 8.07 -2.39 -0.02 0.71 16 32 H 0.11 0.42 6.44 -2.38 -0.02 0.40 16 33 H 0.10 2.06 8.07 -2.39 -0.02 2.04 16 34 H 0.05 1.60 7.42 -2.39 -0.02 1.58 16 35 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.34 12.44 8.43 -89.70 -0.76 11.69 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.39 15.95 5.76 -92.71 -0.53 15.41 16 41 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.13 1.31 7.40 -2.39 -0.02 1.29 16 43 H 0.15 1.07 7.16 -2.39 -0.02 1.05 16 44 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 45 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -95.63 403.73 1.45 -94.18 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.37 Total: 39.38 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 8.52 Total: 24.81 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -8.51 Total: -144.39 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.09 Total: -55.72 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.90 Total: 41.74 kcal Total: -95.63 1.45 -94.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668426165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.868 kcal (2) G-P(sol) polarization free energy of solvation -95.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds