Wall clock time and date at job start Tue Mar 31 2020 20:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47404 * 2 1 4 4 C 1.46494 * 119.99862 * 275.33314 * 3 2 1 5 5 C 1.52995 * 109.46997 * 269.99430 * 4 3 2 6 6 N 1.46904 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00026 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47166 * 179.97438 * 7 6 5 9 9 O 1.21301 * 119.99696 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00396 * 179.97438 * 8 7 6 11 11 C 1.37091 * 120.00054 * 180.02562 * 10 8 7 12 12 H 1.07992 * 120.00491 * 359.97438 * 11 10 8 13 13 C 1.38961 * 119.99841 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99758 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99985 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47337 * 89.99803 * 15 13 11 17 17 H 1.48502 * 109.47039 * 210.00278 * 15 13 11 18 18 H 1.48505 * 109.47049 * 329.99842 * 15 13 11 19 19 C 1.34777 * 119.99682 * 95.33334 * 3 2 1 20 20 O 1.21687 * 119.99965 * 185.21616 * 19 3 2 21 21 C 1.46768 * 120.00167 * 5.20728 * 19 3 2 22 22 C 1.36669 * 126.84224 * 265.28242 * 21 19 3 23 23 C 1.50688 * 126.11063 * 359.97438 * 22 21 19 24 24 N 1.33319 * 107.77872 * 180.22335 * 22 21 19 25 25 C 1.30853 * 109.68824 * 359.77109 * 24 22 21 26 26 N 1.34490 * 109.16508 * 359.97438 * 25 24 22 27 27 C 1.46500 * 126.47455 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47193 * 305.85955 * 1 2 3 29 29 H 1.09004 * 109.46682 * 65.86203 * 1 2 3 30 30 H 1.09003 * 109.47504 * 185.85786 * 1 2 3 31 31 H 1.09005 * 109.47480 * 240.00267 * 2 1 3 32 32 H 1.09006 * 109.47262 * 120.00400 * 2 1 3 33 33 H 1.08994 * 109.47217 * 30.00130 * 4 3 2 34 34 H 1.09009 * 109.46679 * 150.00245 * 4 3 2 35 35 H 1.08994 * 109.47709 * 300.00399 * 5 4 3 36 36 H 1.09001 * 109.47328 * 60.00750 * 5 4 3 37 37 H 1.00892 * 111.00461 * 56.04214 * 6 5 4 38 38 H 1.09002 * 109.47080 * 299.99170 * 7 6 5 39 39 H 1.08999 * 109.47158 * 59.99694 * 7 6 5 40 40 H 0.97006 * 119.99873 * 359.97438 * 10 8 7 41 41 H 0.97002 * 120.00046 * 179.97438 * 14 13 11 42 42 H 1.09005 * 109.47292 * 270.24582 * 23 22 21 43 43 H 1.08998 * 109.47337 * 30.24440 * 23 22 21 44 44 H 1.08997 * 109.47787 * 150.24506 * 23 22 21 45 45 H 1.08008 * 125.41943 * 180.02562 * 25 24 22 46 46 H 1.08994 * 109.47240 * 85.53523 * 27 26 25 47 47 H 1.09003 * 109.47255 * 325.53256 * 27 26 25 48 48 H 1.09007 * 109.47372 * 205.53967 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1514 2.1111 -1.2632 5 6 3.5518 1.8864 -1.8369 6 7 3.6854 2.6188 -3.1034 7 6 5.0204 2.4255 -3.6850 8 6 5.1195 3.1894 -4.9803 9 8 4.1713 3.8321 -5.3794 10 7 6.2619 3.1593 -5.6947 11 6 6.3521 3.8547 -6.8727 12 1 5.5077 4.4262 -7.2285 13 6 7.5302 3.8241 -7.6091 14 7 8.5578 3.1290 -7.1759 15 14 7.6530 4.7710 -9.2146 16 1 8.1502 6.1436 -8.9431 17 1 8.5940 4.0753 -10.1289 18 1 6.3121 4.8467 -9.8484 19 6 2.3453 1.9803 1.1622 20 8 2.6600 3.1557 1.1733 21 6 2.3216 1.2151 2.4144 22 6 1.2911 1.1391 3.3089 23 6 -0.0414 1.8326 3.1897 24 7 1.6776 0.3462 4.3086 25 6 2.8936 -0.0829 4.0862 26 7 3.3350 0.4252 2.9218 27 6 4.6456 0.1910 2.3105 28 1 -0.3633 0.6020 0.8328 29 1 -0.3633 0.4203 -0.9379 30 1 -0.3634 -1.0223 0.1049 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4061 1.7498 -1.9718 34 1 1.9980 3.1756 -1.0856 35 1 4.2970 2.2477 -1.1284 36 1 3.7053 0.8220 -2.0146 37 1 3.4842 3.5994 -2.9770 38 1 5.7761 2.7900 -2.9892 39 1 5.1835 1.3648 -3.8757 40 1 7.0205 2.6462 -5.3750 41 1 9.3801 3.1074 -7.6901 42 1 0.0161 2.8138 3.6610 43 1 -0.2970 1.9498 2.1366 44 1 -0.8072 1.2359 3.6852 45 1 3.4534 -0.7412 4.7341 46 1 4.6137 -0.7264 1.7229 47 1 5.3993 0.0958 3.0922 48 1 4.8990 1.0295 1.6617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668460046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:09 Heat of formation + Delta-G solvation = -3.966874 kcal Electronic energy + Delta-G solvation = -29066.155481 eV Core-core repulsion = 24964.511003 eV Total energy + Delta-G solvation = -4101.644478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63664 -39.94386 -38.30954 -36.68235 -35.34203 -34.87297 -33.86926 -31.92189 -31.29701 -31.11363 -29.59784 -28.43045 -26.64227 -25.96651 -24.25185 -23.95749 -22.87172 -21.71986 -20.89040 -19.45588 -19.08598 -17.97828 -17.84299 -17.10341 -16.49474 -16.17913 -15.97420 -15.56533 -15.51577 -14.74400 -14.65001 -14.38610 -14.31942 -13.97134 -13.91821 -13.77913 -13.46437 -13.41339 -13.27856 -13.10201 -12.89725 -12.75809 -12.55819 -12.35049 -12.14475 -12.00717 -11.57220 -11.52197 -11.45609 -11.17827 -11.01999 -10.75872 -10.40609 -10.23712 -10.18063 -9.98456 -9.52768 -9.10983 -8.73062 -8.49948 -8.13550 -7.98312 -6.43633 -3.84367 1.33633 1.78839 2.42047 2.61413 2.77036 3.16775 3.25498 3.31611 3.88344 3.99029 4.11057 4.14713 4.24609 4.36675 4.55002 4.60559 4.63575 4.78631 4.85710 4.89625 4.93387 5.01491 5.08022 5.13241 5.24258 5.34619 5.37487 5.41403 5.43501 5.50544 5.59494 5.66836 5.73814 5.78200 5.82509 5.89271 5.93226 6.14100 6.22020 6.25194 6.66760 6.94519 7.11130 7.53644 7.57048 7.59873 7.73302 8.04279 8.59064 9.15971 9.51974 10.03319 10.74122 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.001936 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.963253 B =14461.196981 C =14979.302069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.115 3.885 5 C 0.048 3.952 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.596 3.404 20 O -0.517 6.517 21 C -0.073 4.073 22 C 0.058 3.942 23 C -0.075 4.075 24 N -0.491 5.491 25 C 0.200 3.800 26 N -0.439 5.439 27 C 0.067 3.933 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.352 0.648 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.212 0.788 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 -12.049 22.015 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.332 5.332 4 C -0.007 4.007 5 C -0.083 4.083 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.380 3.620 20 O -0.391 6.391 21 C -0.189 4.189 22 C -0.075 4.075 23 C -0.133 4.133 24 N -0.210 5.210 25 C -0.082 4.082 26 N -0.123 5.123 27 C -0.075 4.075 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.172 0.828 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.228 0.772 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.277 -11.719 21.853 27.241 hybrid contribution 1.983 0.595 -0.644 2.169 sum -9.294 -11.123 21.209 25.689 Atomic orbital electron populations 1.22246 0.95176 1.02678 1.03012 1.21586 0.95186 0.81792 1.03086 1.47946 1.64555 1.14667 1.06057 1.21487 0.97625 0.98335 0.83301 1.22239 0.96045 0.99499 0.90538 1.59993 1.28340 1.17301 1.24238 1.21653 0.89525 1.01120 0.95682 1.19776 0.84395 0.86445 0.86793 1.90529 1.37876 1.46459 1.71763 1.41857 1.12580 1.44732 1.20840 1.19710 0.99900 1.25925 0.97322 0.87876 1.25274 0.95068 0.97715 0.99940 1.69610 1.03756 1.41103 1.39889 0.85845 0.78324 0.79121 0.80935 1.20405 1.20924 1.19371 1.17023 0.77158 0.86002 0.81773 1.90880 1.46807 1.15458 1.85973 1.20616 0.92457 1.05726 1.00114 1.20812 0.96150 0.99504 0.91046 1.20197 0.90966 0.99709 1.02411 1.70017 1.10908 1.14096 1.25929 1.25001 0.93022 1.01887 0.88268 1.45311 1.13342 1.35039 1.18590 1.22195 0.81374 1.03826 1.00118 0.91909 0.91780 0.91319 0.89860 0.90672 0.88842 0.89329 0.95467 0.91089 0.82838 0.93872 0.89638 0.77480 0.91872 0.90654 0.91209 0.90429 0.77205 0.89736 0.88678 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.23 37.16 0.38 -0.76 16 2 C 0.11 0.77 6.09 -4.04 -0.02 0.75 16 3 N -0.60 -5.85 2.47 -175.20 -0.43 -6.28 16 4 C 0.11 1.26 5.73 -4.05 -0.02 1.23 16 5 C 0.05 0.58 6.01 -3.82 -0.02 0.56 16 6 N -0.67 -10.63 6.12 -115.06 -0.70 -11.33 16 7 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 8 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 9 O -0.58 -15.83 15.78 5.54 0.09 -15.75 16 10 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 11 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 12 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 15 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.60 7.14 6.59 -12.81 -0.08 7.05 16 20 O -0.52 -8.22 16.66 5.20 0.09 -8.14 16 21 C -0.07 -0.77 4.66 -82.14 -0.38 -1.16 16 22 C 0.06 0.62 7.15 -82.52 -0.59 0.03 16 23 C -0.08 -0.67 10.06 36.00 0.36 -0.31 16 24 N -0.49 -5.25 11.20 -10.65 -0.12 -5.37 16 25 C 0.20 1.55 12.52 -90.58 -1.13 0.41 16 26 N -0.44 -3.57 3.14 -121.97 -0.38 -3.95 16 27 C 0.07 0.34 11.07 59.85 0.66 1.00 16 28 H 0.06 0.45 6.05 -51.93 -0.31 0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.53 8.11 -51.93 -0.42 0.10 16 32 H 0.07 0.55 6.57 -51.93 -0.34 0.20 16 33 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.09 1.11 7.36 -51.92 -0.38 0.73 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.35 5.95 8.43 -39.30 -0.33 5.62 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.58 6.08 -51.93 -0.32 0.27 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.09 0.59 7.80 -51.93 -0.40 0.18 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -35.72 405.18 -8.35 -44.07 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.41 Total: 10.69 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -1.22 Total: 12.03 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.97 Total: -65.03 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.17 Total: -23.88 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.72 -8.35 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668460046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.098 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds