Wall clock time and date at job start Tue Mar 31 2020 20:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47404 * 2 1 4 4 C 1.46494 * 119.99862 * 275.33314 * 3 2 1 5 5 C 1.52995 * 109.46997 * 269.99430 * 4 3 2 6 6 N 1.46904 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00026 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47166 * 179.97438 * 7 6 5 9 9 O 1.21301 * 119.99696 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00396 * 179.97438 * 8 7 6 11 11 C 1.37091 * 120.00054 * 180.02562 * 10 8 7 12 12 H 1.07992 * 120.00491 * 359.97438 * 11 10 8 13 13 C 1.38961 * 119.99841 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99758 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99985 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47337 * 89.99803 * 15 13 11 17 17 H 1.48502 * 109.47039 * 210.00278 * 15 13 11 18 18 H 1.48505 * 109.47049 * 329.99842 * 15 13 11 19 19 C 1.34777 * 119.99682 * 95.33334 * 3 2 1 20 20 O 1.21687 * 119.99965 * 185.21616 * 19 3 2 21 21 C 1.46768 * 120.00167 * 5.20728 * 19 3 2 22 22 C 1.36669 * 126.84224 * 265.28242 * 21 19 3 23 23 C 1.50688 * 126.11063 * 359.97438 * 22 21 19 24 24 N 1.33319 * 107.77872 * 180.22335 * 22 21 19 25 25 C 1.30853 * 109.68824 * 359.77109 * 24 22 21 26 26 N 1.34490 * 109.16508 * 359.97438 * 25 24 22 27 27 C 1.46500 * 126.47455 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47193 * 305.85955 * 1 2 3 29 29 H 1.09004 * 109.46682 * 65.86203 * 1 2 3 30 30 H 1.09003 * 109.47504 * 185.85786 * 1 2 3 31 31 H 1.09005 * 109.47480 * 240.00267 * 2 1 3 32 32 H 1.09006 * 109.47262 * 120.00400 * 2 1 3 33 33 H 1.08994 * 109.47217 * 30.00130 * 4 3 2 34 34 H 1.09009 * 109.46679 * 150.00245 * 4 3 2 35 35 H 1.08994 * 109.47709 * 300.00399 * 5 4 3 36 36 H 1.09001 * 109.47328 * 60.00750 * 5 4 3 37 37 H 1.00892 * 111.00461 * 56.04214 * 6 5 4 38 38 H 1.09002 * 109.47080 * 299.99170 * 7 6 5 39 39 H 1.08999 * 109.47158 * 59.99694 * 7 6 5 40 40 H 0.97006 * 119.99873 * 359.97438 * 10 8 7 41 41 H 0.97002 * 120.00046 * 179.97438 * 14 13 11 42 42 H 1.09005 * 109.47292 * 270.24582 * 23 22 21 43 43 H 1.08998 * 109.47337 * 30.24440 * 23 22 21 44 44 H 1.08997 * 109.47787 * 150.24506 * 23 22 21 45 45 H 1.08008 * 125.41943 * 180.02562 * 25 24 22 46 46 H 1.08994 * 109.47240 * 85.53523 * 27 26 25 47 47 H 1.09003 * 109.47255 * 325.53256 * 27 26 25 48 48 H 1.09007 * 109.47372 * 205.53967 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1514 2.1111 -1.2632 5 6 3.5518 1.8864 -1.8369 6 7 3.6854 2.6188 -3.1034 7 6 5.0204 2.4255 -3.6850 8 6 5.1195 3.1894 -4.9803 9 8 4.1713 3.8321 -5.3794 10 7 6.2619 3.1593 -5.6947 11 6 6.3521 3.8547 -6.8727 12 1 5.5077 4.4262 -7.2285 13 6 7.5302 3.8241 -7.6091 14 7 8.5578 3.1290 -7.1759 15 14 7.6530 4.7710 -9.2146 16 1 8.1502 6.1436 -8.9431 17 1 8.5940 4.0753 -10.1289 18 1 6.3121 4.8467 -9.8484 19 6 2.3453 1.9803 1.1622 20 8 2.6600 3.1557 1.1733 21 6 2.3216 1.2151 2.4144 22 6 1.2911 1.1391 3.3089 23 6 -0.0414 1.8326 3.1897 24 7 1.6776 0.3462 4.3086 25 6 2.8936 -0.0829 4.0862 26 7 3.3350 0.4252 2.9218 27 6 4.6456 0.1910 2.3105 28 1 -0.3633 0.6020 0.8328 29 1 -0.3633 0.4203 -0.9379 30 1 -0.3634 -1.0223 0.1049 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4061 1.7498 -1.9718 34 1 1.9980 3.1756 -1.0856 35 1 4.2970 2.2477 -1.1284 36 1 3.7053 0.8220 -2.0146 37 1 3.4842 3.5994 -2.9770 38 1 5.7761 2.7900 -2.9892 39 1 5.1835 1.3648 -3.8757 40 1 7.0205 2.6462 -5.3750 41 1 9.3801 3.1074 -7.6901 42 1 0.0161 2.8138 3.6610 43 1 -0.2970 1.9498 2.1366 44 1 -0.8072 1.2359 3.6852 45 1 3.4534 -0.7412 4.7341 46 1 4.6137 -0.7264 1.7229 47 1 5.3993 0.0958 3.0922 48 1 4.8990 1.0295 1.6617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668460046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:08 Heat of formation + Delta-G solvation = -29.480587 kcal Electronic energy + Delta-G solvation = -29067.261839 eV Core-core repulsion = 24964.511003 eV Total energy + Delta-G solvation = -4102.750836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.30482 -40.83894 -40.15344 -37.71674 -36.56409 -35.81880 -35.46670 -33.31017 -32.69540 -31.90908 -30.51105 -29.23814 -27.76576 -26.98281 -25.77696 -24.68831 -23.88840 -22.51902 -21.58432 -21.14019 -20.06156 -19.85392 -18.65369 -17.92882 -17.89493 -17.16474 -16.96355 -16.60313 -16.50076 -16.36405 -15.93382 -15.50451 -15.30498 -15.20406 -14.95842 -14.75596 -14.46285 -14.41958 -14.01533 -13.96295 -13.67977 -13.57822 -13.52511 -13.38901 -13.33741 -13.18351 -12.97275 -12.77397 -12.66019 -12.42983 -12.13848 -12.12618 -12.05219 -11.59779 -11.52248 -10.97367 -10.61828 -10.41356 -10.03432 -9.93224 -9.45972 -9.43808 -8.48182 -5.96869 0.65208 1.00972 1.37309 1.41450 1.54118 1.62572 1.95328 2.02627 2.05318 2.28924 2.93909 3.18878 3.29354 3.51901 3.60173 3.79256 3.90981 3.97515 4.03397 4.11255 4.24858 4.27276 4.29667 4.31190 4.41671 4.45216 4.48141 4.55365 4.59564 4.68294 4.70542 4.77113 4.81593 4.89997 4.92816 4.96720 5.12147 5.31283 5.38749 5.40183 5.52326 5.80577 6.03991 6.09267 6.15603 6.25245 6.58057 6.84402 6.94069 7.10911 7.53860 8.09112 8.69167 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.001936 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.963253 B =14461.196981 C =14979.302069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.589 5.589 4 C 0.120 3.880 5 C 0.058 3.942 6 N -0.676 5.676 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.993 3.007 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.273 1.273 19 C 0.599 3.401 20 O -0.568 6.568 21 C -0.093 4.093 22 C 0.045 3.955 23 C -0.074 4.074 24 N -0.524 5.524 25 C 0.215 3.785 26 N -0.439 5.439 27 C 0.063 3.937 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.092 0.908 37 H 0.344 0.656 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.105 0.895 47 H 0.122 0.878 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -14.219 22.587 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 N -0.320 5.320 4 C -0.002 4.002 5 C -0.073 4.073 6 N -0.308 5.308 7 C -0.065 4.065 8 C 0.224 3.776 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.198 1.198 19 C 0.385 3.615 20 O -0.445 6.445 21 C -0.210 4.210 22 C -0.088 4.088 23 C -0.132 4.132 24 N -0.244 5.244 25 C -0.067 4.067 26 N -0.121 5.121 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.110 0.890 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.269 0.731 46 H 0.124 0.876 47 H 0.141 0.859 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.536 -13.949 22.431 28.439 hybrid contribution 1.744 1.206 -0.752 2.250 sum -8.792 -12.743 21.679 26.639 Atomic orbital electron populations 1.22223 0.94591 1.03506 1.02516 1.21781 0.95626 0.80151 1.04062 1.47968 1.63522 1.15487 1.05038 1.21349 0.97382 0.97537 0.83982 1.22229 0.96426 0.99929 0.88667 1.60008 1.27379 1.17118 1.26304 1.21519 0.90991 1.01351 0.92627 1.20838 0.83063 0.85599 0.88080 1.90499 1.39100 1.48103 1.73209 1.41920 1.13399 1.44953 1.20665 1.19667 0.99983 1.27536 0.99183 0.90313 1.26051 0.94321 0.98198 1.02738 1.69665 1.04059 1.41362 1.40952 0.84923 0.78208 0.78088 0.77097 1.19710 1.19442 1.19754 1.17237 0.76213 0.85415 0.82632 1.90849 1.49317 1.17607 1.86761 1.20428 0.93601 1.07027 0.99901 1.21070 0.96728 0.99744 0.91256 1.20209 0.90966 0.99480 1.02537 1.70020 1.12696 1.15217 1.26422 1.25832 0.92308 1.00716 0.87861 1.45502 1.13708 1.34301 1.18616 1.22435 0.80544 1.03826 1.01020 0.92865 0.91933 0.89701 0.88172 0.90264 0.87573 0.91409 0.96040 0.89014 0.83810 0.92018 0.87160 0.76921 0.91259 0.91254 0.91132 0.89425 0.73086 0.87627 0.85917 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.23 71.98 0.74 -1.23 16 2 C 0.11 1.32 6.09 86.38 0.53 1.85 16 3 N -0.59 -11.04 2.47 -826.43 -2.04 -13.08 16 4 C 0.12 2.57 5.73 86.38 0.49 3.06 16 5 C 0.06 1.32 6.01 86.30 0.52 1.84 16 6 N -0.68 -21.01 6.12 -517.93 -3.17 -24.19 16 7 C 0.07 2.28 6.17 85.56 0.53 2.81 16 8 C 0.44 20.76 7.82 87.66 0.69 21.44 16 9 O -0.62 -34.63 15.78 -3.09 -0.05 -34.68 16 10 N -0.57 -29.29 5.29 -306.98 -1.62 -30.92 16 11 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.32 13.05 21.67 0.28 -49.03 16 15 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C 0.60 14.44 6.59 86.47 0.57 15.01 16 20 O -0.57 -18.80 16.66 -4.31 -0.07 -18.87 16 21 C -0.09 -1.93 4.66 40.01 0.19 -1.74 16 22 C 0.04 0.96 7.15 41.96 0.30 1.26 16 23 C -0.07 -1.35 10.06 71.23 0.72 -0.63 16 24 N -0.52 -10.55 11.20 -187.60 -2.10 -12.65 16 25 C 0.21 2.79 12.52 180.33 2.26 5.05 16 26 N -0.44 -6.30 3.14 -539.81 -1.69 -8.00 16 27 C 0.06 0.48 11.07 127.77 1.41 1.90 16 28 H 0.05 0.73 6.05 -2.39 -0.01 0.72 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.96 8.11 -2.38 -0.02 0.94 16 32 H 0.08 0.98 6.57 -2.38 -0.02 0.96 16 33 H 0.11 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.07 1.76 7.36 -2.38 -0.02 1.74 16 35 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.34 11.73 8.43 -89.70 -0.76 10.98 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.40 19.16 7.90 -92.70 -0.73 18.43 16 41 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.07 1.22 6.08 -2.39 -0.01 1.20 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.25 0.74 8.06 -2.91 -0.02 0.72 16 46 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.07 0.83 7.80 -2.38 -0.02 0.81 16 Total: -1.00 -79.39 405.18 1.27 -78.12 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.50 Total: 36.24 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 10.22 Total: 32.19 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -10.35 Total: -137.87 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.12 Total: -53.55 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.39 1.27 -78.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668460046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.638 kcal (2) G-P(sol) polarization free energy of solvation -79.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds