Wall clock time and date at job start Tue Mar 31 2020 20:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99752 * 2 1 4 4 C 1.52998 * 109.46646 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.39768 * 125.84169 * 124.99898 * 5 4 3 7 7 C 1.36099 * 107.82791 * 179.97438 * 6 5 4 8 8 N 1.39499 * 126.21765 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99884 * 0.02562 * 8 7 6 10 10 O 1.21591 * 119.99644 * 5.02116 * 9 8 7 11 11 N 1.34769 * 120.00417 * 185.01718 * 9 8 7 12 12 C 1.46968 * 120.58997 * 354.92249 * 11 9 8 13 13 C 1.53378 * 108.63209 * 235.20234 * 12 11 9 14 14 N 1.46962 * 108.63458 * 310.57319 * 13 12 11 15 15 C 1.36936 * 120.59707 * 235.19996 * 14 13 12 16 16 H 1.08002 * 119.99720 * 26.42242 * 15 14 13 17 17 C 1.38807 * 120.00219 * 206.13875 * 15 14 13 18 18 N 1.31621 * 119.99805 * 217.27346 * 17 15 14 19 19 Si 1.86798 * 120.00137 * 37.27046 * 17 15 14 20 20 H 1.48499 * 109.46986 * 95.21082 * 19 17 15 21 21 H 1.48499 * 109.47441 * 215.21422 * 19 17 15 22 22 H 1.48501 * 109.46893 * 335.21241 * 19 17 15 23 23 C 1.46963 * 118.81020 * 55.48168 * 14 13 12 24 24 C 1.46962 * 120.59834 * 174.89480 * 11 9 8 25 25 N 1.35252 * 107.56765 * 0.24238 * 7 6 5 26 26 C 1.46495 * 126.04324 * 179.76001 * 25 7 6 27 27 N 1.30842 * 125.83815 * 304.97878 * 5 4 3 28 28 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47072 * 299.99996 * 1 2 3 30 30 H 1.08993 * 109.47019 * 59.99545 * 1 2 3 31 31 H 1.08997 * 109.47176 * 60.00479 * 3 2 1 32 32 H 1.08999 * 109.47565 * 299.99738 * 3 2 1 33 33 H 1.09006 * 109.47407 * 60.00659 * 4 3 2 34 34 H 1.08998 * 109.47751 * 300.00249 * 4 3 2 35 35 H 1.07998 * 126.08166 * 0.02562 * 6 5 4 36 36 H 0.96996 * 120.00380 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.61214 * 115.46067 * 12 11 9 38 38 H 1.08991 * 109.61316 * 354.94697 * 12 11 9 39 39 H 1.09002 * 109.61028 * 190.83275 * 13 12 11 40 40 H 1.08999 * 109.60829 * 70.32373 * 13 12 11 41 41 H 0.97000 * 119.99781 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.61071 * 64.26439 * 23 14 13 43 43 H 1.09001 * 109.61149 * 184.77468 * 23 14 13 44 44 H 1.08999 * 109.61583 * 244.54230 * 24 11 9 45 45 H 1.08998 * 109.60731 * 4.88565 * 24 11 9 46 46 H 1.09000 * 109.47301 * 89.99959 * 26 25 7 47 47 H 1.09000 * 109.47491 * 210.00025 * 26 25 7 48 48 H 1.09005 * 109.47730 * 330.00231 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 6 5.0747 3.0444 0.9299 7 6 5.3812 4.3248 0.5853 8 7 6.2683 5.1685 1.2540 9 6 6.9150 4.7317 2.3529 10 8 6.7960 3.5752 2.7089 11 7 7.6936 5.5767 3.0572 12 6 7.9359 6.9451 2.5787 13 6 9.4501 7.1687 2.4799 14 7 10.0716 6.7387 3.7403 15 6 10.8627 7.5973 4.4558 16 1 10.7154 8.6640 4.3721 17 6 11.8501 7.0966 5.2931 18 7 12.0991 7.6865 6.4431 19 14 12.8255 5.5858 4.7879 20 1 14.0927 6.0087 4.1393 21 1 13.1329 4.7701 5.9901 22 1 12.0262 4.7773 3.8324 23 6 9.8338 5.3686 4.2158 24 6 8.3151 5.1467 4.3176 25 7 4.6649 4.6328 -0.5199 26 6 4.6832 5.9142 -1.2296 27 7 3.9050 3.5087 -0.8677 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8575 0.6436 -0.8892 34 1 3.8568 0.6438 0.8908 35 1 5.4762 2.4984 1.7708 36 1 6.4198 6.0695 0.9282 37 1 7.5056 7.6596 3.2805 38 1 7.4821 7.0749 1.5963 39 1 9.6535 8.2267 2.3140 40 1 9.8533 6.5823 1.6543 41 1 12.7894 7.3368 7.0281 42 1 10.2638 4.6569 3.5110 43 1 10.2907 5.2374 5.1967 44 1 7.9119 5.7331 5.1432 45 1 8.1091 4.0895 4.4849 46 1 5.4560 5.8931 -1.9979 47 1 3.7127 6.0857 -1.6951 48 1 4.8946 6.7176 -0.5238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669917833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:44 Heat of formation + Delta-G solvation = 62.270687 kcal Electronic energy + Delta-G solvation = -29395.696223 eV Core-core repulsion = 25296.924021 eV Total energy + Delta-G solvation = -4098.772202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68080 -40.10236 -38.14772 -37.35785 -35.31379 -34.18996 -33.86230 -31.65365 -31.36458 -30.79574 -29.01585 -27.31127 -27.10838 -26.00130 -23.85887 -23.53247 -23.35749 -21.92579 -20.66536 -20.28138 -19.19626 -18.24809 -17.28513 -16.65482 -16.56500 -16.30562 -16.12142 -15.71903 -15.41772 -15.07568 -14.84090 -14.67433 -14.39443 -14.01305 -13.93193 -13.84978 -13.44338 -13.27666 -13.17368 -12.90595 -12.65194 -12.53810 -12.35478 -12.13491 -12.03052 -11.72271 -11.44692 -11.16053 -10.95860 -10.92542 -10.69533 -10.55402 -10.32986 -10.28581 -9.91395 -9.86814 -9.53503 -8.97525 -8.87798 -8.40960 -8.03058 -7.12683 -6.17070 -3.37048 1.70612 1.87951 2.65296 2.72517 3.28006 3.32887 3.45527 3.50807 3.52106 3.69126 4.25110 4.46049 4.68726 4.77157 4.82374 4.85211 4.89682 5.03973 5.05789 5.08188 5.13549 5.24303 5.29093 5.33902 5.36929 5.42652 5.44970 5.55539 5.68500 5.74474 5.82960 5.90994 5.93655 6.01963 6.09112 6.16068 6.34840 6.43050 6.62129 6.69410 6.75551 6.88133 6.90054 7.00774 7.60009 7.78255 7.84378 8.15731 8.46147 8.78795 9.58603 9.97246 10.96834 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002280 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.295904 B =12278.491972 C =13023.300427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.069 3.931 4 C -0.033 4.033 5 C 0.089 3.911 6 C -0.275 4.275 7 C 0.335 3.665 8 N -0.665 5.665 9 C 0.712 3.288 10 O -0.565 6.565 11 N -0.607 5.607 12 C 0.093 3.907 13 C 0.132 3.868 14 N -0.598 5.598 15 C -0.281 4.281 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.876 5.876 19 Si 0.834 3.166 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.256 1.256 23 C 0.131 3.869 24 C 0.110 3.890 25 N -0.393 5.393 26 C 0.101 3.899 27 N -0.295 5.295 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.176 0.824 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.035 0.965 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.518 -5.757 -14.172 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.009 4.009 4 C -0.073 4.073 5 C -0.077 4.077 6 C -0.307 4.307 7 C 0.114 3.886 8 N -0.318 5.318 9 C 0.413 3.587 10 O -0.440 6.440 11 N -0.343 5.343 12 C -0.032 4.032 13 C 0.005 3.995 14 N -0.321 5.321 15 C -0.408 4.408 16 H 0.100 0.900 17 C -0.160 4.160 18 N -0.515 5.515 19 Si 0.661 3.339 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.181 1.181 23 C 0.005 3.995 24 C -0.014 4.014 25 N -0.181 5.181 26 C -0.041 4.041 27 N -0.119 5.119 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.193 0.807 36 H 0.243 0.757 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.111 0.889 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.950 -6.187 -14.745 25.568 hybrid contribution 1.218 0.132 0.179 1.238 sum -18.732 -6.055 -14.566 24.489 Atomic orbital electron populations 1.22722 0.80966 1.02662 1.00004 1.87838 1.19752 1.28171 1.95489 1.22458 0.93232 0.84344 1.00827 1.19806 0.92622 0.90062 1.04776 1.21847 0.97000 0.95357 0.93489 1.21511 1.07899 0.94163 1.07088 1.17650 0.91340 0.91557 0.88087 1.42150 1.44198 1.16515 1.28913 1.15512 0.79104 0.84905 0.79151 1.90843 1.67263 1.15940 1.69997 1.47233 1.49574 1.12854 1.24637 1.22355 1.00131 0.82869 0.97865 1.21303 0.89429 0.99648 0.89117 1.44276 1.55785 1.10813 1.21253 1.18722 1.11547 0.90096 1.20396 0.89965 1.25185 0.98235 0.96990 0.95607 1.70113 1.31839 1.42647 1.06897 0.87629 0.82372 0.84724 0.79215 1.21949 1.21883 1.18101 1.21838 0.91607 0.86699 0.99394 1.22426 0.95356 1.00811 0.82820 1.48356 1.35459 1.12483 1.21845 1.21794 1.04665 0.80449 0.97186 1.77337 1.18035 0.93120 1.23363 0.89630 0.94077 0.94121 0.93111 0.92639 0.89335 0.88788 0.80694 0.75706 0.90541 0.92103 0.90485 0.95610 0.92602 0.94716 0.90234 0.90960 0.89336 0.90736 0.88867 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.11 10.70 -35.23 -0.38 -4.49 16 3 C 0.07 0.69 5.90 37.16 0.22 0.91 16 4 C -0.03 -0.36 6.16 -27.88 -0.17 -0.53 16 5 C 0.09 1.17 6.48 -82.44 -0.53 0.64 16 6 C -0.27 -4.08 9.57 -39.78 -0.38 -4.46 16 7 C 0.33 4.57 7.66 -153.15 -1.17 3.40 16 8 N -0.67 -8.45 5.33 -15.85 -0.08 -8.53 16 9 C 0.71 11.33 8.26 -86.92 -0.72 10.61 16 10 O -0.56 -10.54 12.90 5.29 0.07 -10.48 16 11 N -0.61 -9.57 2.95 -177.94 -0.52 -10.10 16 12 C 0.09 1.25 6.56 -3.59 -0.02 1.23 16 13 C 0.13 2.23 6.67 -3.59 -0.02 2.21 16 14 N -0.60 -12.96 2.71 -171.76 -0.47 -13.43 16 15 C -0.28 -7.23 9.85 -15.06 -0.15 -7.38 16 16 H 0.08 2.24 8.05 -52.49 -0.42 1.82 16 17 C 0.04 1.14 4.81 -17.43 -0.08 1.05 16 18 N -0.88 -25.22 13.97 55.49 0.78 -24.44 16 19 Si 0.83 20.37 26.44 -169.99 -4.49 15.87 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.26 -6.02 4.96 56.52 0.28 -5.74 16 23 C 0.13 2.70 4.57 -3.36 -0.02 2.69 16 24 C 0.11 1.92 6.62 -3.36 -0.02 1.90 16 25 N -0.39 -4.68 4.02 -67.18 -0.27 -4.95 16 26 C 0.10 0.71 11.28 59.84 0.68 1.38 16 27 N -0.29 -3.91 12.53 33.65 0.42 -3.49 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.18 2.88 5.84 -52.49 -0.31 2.57 16 36 H 0.40 3.86 5.44 -40.82 -0.22 3.64 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.58 5.61 -51.93 -0.29 0.29 16 39 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.03 0.75 6.77 -51.93 -0.35 0.39 16 43 H 0.08 1.77 5.55 -51.93 -0.29 1.48 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.53 6.99 -51.93 -0.36 1.17 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.39 7.50 -51.93 -0.39 0.00 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -33.25 381.79 -7.86 -41.11 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.37 Total: 2.16 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -1.29 Total: 15.00 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.15 Total: -64.93 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.31 Total: -14.97 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.49 Total: 15.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.25 -7.86 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669917833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.378 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds