Wall clock time and date at job start Tue Mar 31 2020 20:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99752 * 2 1 4 4 C 1.52998 * 109.46646 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.39768 * 125.84169 * 124.99898 * 5 4 3 7 7 C 1.36099 * 107.82791 * 179.97438 * 6 5 4 8 8 N 1.39499 * 126.21765 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99884 * 0.02562 * 8 7 6 10 10 O 1.21591 * 119.99644 * 5.02116 * 9 8 7 11 11 N 1.34769 * 120.00417 * 185.01718 * 9 8 7 12 12 C 1.46968 * 120.58997 * 354.92249 * 11 9 8 13 13 C 1.53378 * 108.63209 * 235.20234 * 12 11 9 14 14 N 1.46962 * 108.63458 * 310.57319 * 13 12 11 15 15 C 1.36936 * 120.59707 * 235.19996 * 14 13 12 16 16 H 1.08002 * 119.99720 * 26.42242 * 15 14 13 17 17 C 1.38807 * 120.00219 * 206.13875 * 15 14 13 18 18 N 1.31621 * 119.99805 * 217.27346 * 17 15 14 19 19 Si 1.86798 * 120.00137 * 37.27046 * 17 15 14 20 20 H 1.48499 * 109.46986 * 95.21082 * 19 17 15 21 21 H 1.48499 * 109.47441 * 215.21422 * 19 17 15 22 22 H 1.48501 * 109.46893 * 335.21241 * 19 17 15 23 23 C 1.46963 * 118.81020 * 55.48168 * 14 13 12 24 24 C 1.46962 * 120.59834 * 174.89480 * 11 9 8 25 25 N 1.35252 * 107.56765 * 0.24238 * 7 6 5 26 26 C 1.46495 * 126.04324 * 179.76001 * 25 7 6 27 27 N 1.30842 * 125.83815 * 304.97878 * 5 4 3 28 28 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47072 * 299.99996 * 1 2 3 30 30 H 1.08993 * 109.47019 * 59.99545 * 1 2 3 31 31 H 1.08997 * 109.47176 * 60.00479 * 3 2 1 32 32 H 1.08999 * 109.47565 * 299.99738 * 3 2 1 33 33 H 1.09006 * 109.47407 * 60.00659 * 4 3 2 34 34 H 1.08998 * 109.47751 * 300.00249 * 4 3 2 35 35 H 1.07998 * 126.08166 * 0.02562 * 6 5 4 36 36 H 0.96996 * 120.00380 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.61214 * 115.46067 * 12 11 9 38 38 H 1.08991 * 109.61316 * 354.94697 * 12 11 9 39 39 H 1.09002 * 109.61028 * 190.83275 * 13 12 11 40 40 H 1.08999 * 109.60829 * 70.32373 * 13 12 11 41 41 H 0.97000 * 119.99781 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.61071 * 64.26439 * 23 14 13 43 43 H 1.09001 * 109.61149 * 184.77468 * 23 14 13 44 44 H 1.08999 * 109.61583 * 244.54230 * 24 11 9 45 45 H 1.08998 * 109.60731 * 4.88565 * 24 11 9 46 46 H 1.09000 * 109.47301 * 89.99959 * 26 25 7 47 47 H 1.09000 * 109.47491 * 210.00025 * 26 25 7 48 48 H 1.09005 * 109.47730 * 330.00231 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 6 5.0747 3.0444 0.9299 7 6 5.3812 4.3248 0.5853 8 7 6.2683 5.1685 1.2540 9 6 6.9150 4.7317 2.3529 10 8 6.7960 3.5752 2.7089 11 7 7.6936 5.5767 3.0572 12 6 7.9359 6.9451 2.5787 13 6 9.4501 7.1687 2.4799 14 7 10.0716 6.7387 3.7403 15 6 10.8627 7.5973 4.4558 16 1 10.7154 8.6640 4.3721 17 6 11.8501 7.0966 5.2931 18 7 12.0991 7.6865 6.4431 19 14 12.8255 5.5858 4.7879 20 1 14.0927 6.0087 4.1393 21 1 13.1329 4.7701 5.9901 22 1 12.0262 4.7773 3.8324 23 6 9.8338 5.3686 4.2158 24 6 8.3151 5.1467 4.3176 25 7 4.6649 4.6328 -0.5199 26 6 4.6832 5.9142 -1.2296 27 7 3.9050 3.5087 -0.8677 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8575 0.6436 -0.8892 34 1 3.8568 0.6438 0.8908 35 1 5.4762 2.4984 1.7708 36 1 6.4198 6.0695 0.9282 37 1 7.5056 7.6596 3.2805 38 1 7.4821 7.0749 1.5963 39 1 9.6535 8.2267 2.3140 40 1 9.8533 6.5823 1.6543 41 1 12.7894 7.3368 7.0281 42 1 10.2638 4.6569 3.5110 43 1 10.2907 5.2374 5.1967 44 1 7.9119 5.7331 5.1432 45 1 8.1091 4.0895 4.4849 46 1 5.4560 5.8931 -1.9979 47 1 3.7127 6.0857 -1.6951 48 1 4.8946 6.7176 -0.5238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669917833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:42 Heat of formation + Delta-G solvation = 39.752690 kcal Electronic energy + Delta-G solvation = -29396.672677 eV Core-core repulsion = 25296.924021 eV Total energy + Delta-G solvation = -4099.748655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.70583 -41.30080 -38.93446 -38.76050 -36.41289 -35.72524 -34.83331 -33.50376 -32.22856 -32.10612 -30.14815 -28.64900 -27.95727 -26.70763 -25.47135 -24.94803 -24.18215 -23.24516 -21.95901 -21.33388 -20.46602 -19.39696 -18.53443 -18.16069 -17.41133 -17.21125 -17.13198 -16.83368 -16.69115 -16.29307 -16.02034 -15.96020 -15.67279 -15.35549 -15.26019 -14.78613 -14.70365 -14.32529 -14.25061 -14.19208 -13.98328 -13.62242 -13.49628 -13.26453 -12.88073 -12.77587 -12.55878 -12.51473 -12.28048 -12.16570 -12.10606 -11.98616 -11.91319 -11.62173 -11.43937 -11.13452 -10.67637 -10.62361 -10.01803 -9.82462 -9.17241 -8.86239 -8.23851 -5.38332 0.69347 0.84156 1.35427 1.47014 1.52142 1.60032 1.77105 2.10353 2.44698 2.55159 2.83920 2.92392 3.36707 3.47584 3.94620 4.06910 4.08937 4.10080 4.15159 4.18280 4.36520 4.38965 4.43336 4.48943 4.51900 4.53510 4.55424 4.57201 4.61200 4.64598 4.74264 4.83038 4.87021 4.89470 4.90287 4.99463 5.03144 5.09749 5.17798 5.40479 5.69160 5.72721 5.85219 6.01477 6.12544 6.19856 6.55961 6.76880 6.89233 7.25376 7.62679 8.05460 8.93524 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002280 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.295904 B =12278.491972 C =13023.300427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.076 3.924 4 C -0.032 4.032 5 C 0.087 3.913 6 C -0.302 4.302 7 C 0.329 3.671 8 N -0.646 5.646 9 C 0.713 3.287 10 O -0.595 6.595 11 N -0.609 5.609 12 C 0.100 3.900 13 C 0.125 3.875 14 N -0.611 5.611 15 C -0.259 4.259 16 H 0.062 0.938 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.888 3.112 20 H -0.302 1.302 21 H -0.299 1.299 22 H -0.242 1.242 23 C 0.132 3.868 24 C 0.122 3.878 25 N -0.385 5.385 26 C 0.086 3.914 27 N -0.304 5.304 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.422 0.578 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.262 0.738 42 H 0.029 0.971 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.367 -5.455 -16.615 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.001 4.001 4 C -0.071 4.071 5 C -0.078 4.078 6 C -0.334 4.334 7 C 0.106 3.894 8 N -0.300 5.300 9 C 0.414 3.586 10 O -0.473 6.473 11 N -0.344 5.344 12 C -0.024 4.024 13 C 0.000 4.000 14 N -0.335 5.335 15 C -0.388 4.388 16 H 0.079 0.921 17 C -0.207 4.207 18 N -0.566 5.566 19 Si 0.716 3.284 20 H -0.231 1.231 21 H -0.226 1.226 22 H -0.166 1.166 23 C 0.005 3.995 24 C -0.003 4.003 25 N -0.173 5.173 26 C -0.053 4.053 27 N -0.129 5.129 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.172 0.828 36 H 0.263 0.737 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.124 0.876 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.847 -5.865 -17.277 28.463 hybrid contribution 1.688 0.096 0.840 1.888 sum -20.159 -5.769 -16.437 26.642 Atomic orbital electron populations 1.22933 0.79352 1.03966 1.00778 1.87804 1.21590 1.28267 1.95607 1.22337 0.92645 0.84363 1.00739 1.19830 0.93196 0.89103 1.05021 1.22029 0.96686 0.96145 0.92980 1.21464 1.09250 0.95242 1.07447 1.17608 0.91605 0.91407 0.88739 1.41779 1.43376 1.17074 1.27799 1.15557 0.79082 0.84369 0.79589 1.90848 1.68138 1.17393 1.70905 1.47183 1.49516 1.13674 1.24060 1.22379 0.97747 0.81623 1.00633 1.21553 0.91272 1.00278 0.86907 1.44402 1.55431 1.10624 1.23053 1.18734 1.10802 0.89880 1.19362 0.92053 1.25632 0.99702 0.99511 0.95876 1.70188 1.33221 1.44985 1.08211 0.86760 0.80753 0.82257 0.78602 1.23072 1.22643 1.16610 1.21748 0.93655 0.86050 0.98032 1.22092 0.93142 1.01051 0.83968 1.48687 1.34141 1.13356 1.21151 1.22267 1.06095 0.78862 0.98096 1.77293 1.18474 0.93632 1.23465 0.88158 0.93449 0.93181 0.93301 0.92522 0.88794 0.88811 0.82817 0.73696 0.90027 0.87284 0.89553 0.94848 0.92919 0.95299 0.92336 0.90867 0.89231 0.89208 0.87648 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.23 10.70 -148.98 -1.59 -9.83 16 3 C 0.08 1.47 5.90 71.98 0.42 1.90 16 4 C -0.03 -0.68 6.16 29.85 0.18 -0.49 16 5 C 0.09 2.22 6.48 43.08 0.28 2.50 16 6 C -0.30 -8.79 9.57 22.14 0.21 -8.58 16 7 C 0.33 8.26 7.66 131.31 1.01 9.27 16 8 N -0.65 -14.35 5.33 -322.31 -1.72 -16.06 16 9 C 0.71 21.08 8.26 179.06 1.48 22.55 16 10 O -0.59 -21.74 12.90 -4.00 -0.05 -21.79 16 11 N -0.61 -17.62 2.95 -835.13 -2.46 -20.08 16 12 C 0.10 2.31 6.56 86.42 0.57 2.88 16 13 C 0.13 3.87 6.67 86.42 0.58 4.45 16 14 N -0.61 -25.68 2.71 -697.33 -1.89 -27.57 16 15 C -0.26 -13.31 9.85 84.03 0.83 -12.48 16 16 H 0.06 3.37 8.05 -2.91 -0.02 3.35 16 17 C -0.01 -0.49 4.81 84.86 0.41 -0.08 16 18 N -0.92 -54.48 13.97 21.65 0.30 -54.18 16 19 Si 0.89 42.86 26.44 68.60 1.81 44.68 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 22 H -0.24 -10.96 4.96 99.48 0.49 -10.47 16 23 C 0.13 5.30 4.57 86.57 0.40 5.70 16 24 C 0.12 4.13 6.62 86.57 0.57 4.71 16 25 N -0.39 -8.09 4.02 -366.45 -1.47 -9.56 16 26 C 0.09 0.87 11.28 127.77 1.44 2.31 16 27 N -0.30 -7.52 12.53 -47.44 -0.59 -8.11 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.09 1.92 8.12 -2.39 -0.02 1.91 16 35 H 0.15 5.16 5.84 -2.91 -0.02 5.14 16 36 H 0.42 6.03 5.44 -92.71 -0.50 5.52 16 37 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 38 H 0.11 1.48 5.61 -2.39 -0.01 1.47 16 39 H 0.09 2.51 7.93 -2.39 -0.02 2.49 16 40 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 42 H 0.03 1.21 6.77 -2.38 -0.02 1.19 16 43 H 0.06 2.60 5.55 -2.39 -0.01 2.59 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.09 3.03 6.99 -2.39 -0.02 3.02 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.11 0.51 7.50 -2.38 -0.02 0.49 16 Total: -1.00 -73.35 381.79 2.21 -71.14 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.26 Total: 15.16 kcal Atomic # 6 Polarization: 26.58 SS G_CDS: 9.62 Total: 36.21 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -7.84 Total: -135.56 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.65 Total: -31.62 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.81 Total: 44.68 kcal Total: -73.35 2.21 -71.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669917833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.893 kcal (2) G-P(sol) polarization free energy of solvation -73.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds