Wall clock time and date at job start Tue Mar 31 2020 20:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00005 * 2 1 4 4 C 1.53004 * 109.47271 * 66.04663 * 3 2 1 5 5 C 1.53003 * 109.47096 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47047 * 180.02562 * 5 4 3 7 7 C 1.46508 * 119.99764 * 269.99964 * 6 5 4 8 8 C 1.34768 * 120.00025 * 90.00012 * 6 5 4 9 9 O 1.21622 * 120.00319 * 3.39658 * 8 6 5 10 10 C 1.47328 * 119.99896 * 183.39430 * 8 6 5 11 11 C 1.36425 * 126.23516 * 173.48051 * 10 8 6 12 12 N 1.35382 * 106.86864 * 179.97438 * 11 10 8 13 13 C 1.46501 * 126.13300 * 179.97438 * 12 11 10 14 14 C 1.35849 * 107.73041 * 0.26097 * 12 11 10 15 15 N 1.30170 * 109.00224 * 359.55676 * 14 12 11 16 16 C 1.46902 * 111.00165 * 236.04386 * 2 1 3 17 17 C 1.50699 * 109.47027 * 293.95855 * 16 2 1 18 18 O 1.21294 * 119.99921 * 359.97438 * 17 16 2 19 19 N 1.34771 * 119.99967 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99982 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00424 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00173 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99717 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00516 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47208 * 119.99943 * 24 22 20 27 27 H 1.48497 * 109.47385 * 240.00360 * 24 22 20 28 28 H 1.09000 * 109.47025 * 60.00236 * 1 2 3 29 29 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47220 * 299.99834 * 1 2 3 31 31 H 1.08998 * 109.47518 * 306.04230 * 3 2 1 32 32 H 1.09004 * 109.47261 * 186.04594 * 3 2 1 33 33 H 1.09000 * 109.46988 * 60.00120 * 4 3 2 34 34 H 1.09000 * 109.47143 * 299.99709 * 4 3 2 35 35 H 1.08995 * 109.46933 * 59.99808 * 5 4 3 36 36 H 1.09000 * 109.47060 * 299.99971 * 5 4 3 37 37 H 1.08989 * 109.46931 * 264.09988 * 7 6 5 38 38 H 1.09000 * 109.46752 * 24.09661 * 7 6 5 39 39 H 1.08996 * 109.46800 * 144.09476 * 7 6 5 40 40 H 1.07995 * 126.56375 * 359.97438 * 11 10 8 41 41 H 1.09001 * 109.46678 * 90.00030 * 13 12 11 42 42 H 1.08996 * 109.47360 * 209.99741 * 13 12 11 43 43 H 1.08999 * 109.47216 * 330.00377 * 13 12 11 44 44 H 1.07995 * 125.49768 * 179.71724 * 14 12 11 45 45 H 1.08999 * 109.46880 * 53.95396 * 16 2 1 46 46 H 1.08991 * 109.47098 * 173.95483 * 16 2 1 47 47 H 0.96994 * 120.00304 * 0.02562 * 19 17 16 48 48 H 0.97006 * 120.00180 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 7 1.8323 4.1423 2.5810 7 6 0.5759 4.8868 2.6975 8 6 2.6680 4.0616 3.6352 9 8 3.7389 3.4965 3.5206 10 6 2.2844 4.6580 4.9266 11 6 2.9683 4.5455 6.1017 12 7 2.2713 5.2420 7.0301 13 6 2.6308 5.3995 8.4416 14 6 1.1754 5.7633 6.4196 15 7 1.1862 5.4201 5.1640 16 6 1.9955 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9728 18 8 1.0053 -2.5832 -0.0029 19 7 2.0179 -3.1180 -1.9031 20 6 1.6921 -4.4412 -1.7530 21 1 1.1298 -4.7643 -0.8895 22 6 2.0845 -5.3666 -2.7124 23 7 2.7684 -4.9734 -3.7635 24 14 1.6401 -7.1693 -2.5083 25 1 0.8728 -7.3506 -1.2498 26 1 0.8118 -7.6085 -3.6600 27 1 2.8817 -7.9821 -2.4530 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5612 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5015 2.1492 34 1 0.5472 2.0845 1.4265 35 1 1.7464 4.0417 0.4876 36 1 3.2646 3.4582 1.2105 37 1 0.7624 5.9450 2.5153 38 1 -0.1377 4.5121 1.9636 39 1 0.1682 4.7568 3.6999 40 1 3.8893 4.0044 6.2608 41 1 3.2569 6.2838 8.5605 42 1 1.7248 5.5130 9.0368 43 1 3.1783 4.5189 8.7775 44 1 0.4188 6.3674 6.8981 45 1 1.5611 -0.3873 -2.0628 46 1 3.0796 -0.6611 -1.1755 47 1 2.5233 -2.8280 -2.6785 48 1 3.0427 -5.6194 -4.4331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673429714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:40 Heat of formation + Delta-G solvation = 14.839548 kcal Electronic energy + Delta-G solvation = -28237.396426 eV Core-core repulsion = 24136.567455 eV Total energy + Delta-G solvation = -4100.828970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.58290 -39.61189 -38.53996 -36.76461 -35.63395 -34.60293 -33.80085 -31.94134 -31.15302 -30.15946 -28.13146 -27.65816 -26.99683 -26.11475 -24.80968 -23.48359 -22.14813 -21.55804 -20.61717 -19.55209 -19.03964 -17.76668 -17.74238 -16.65219 -16.40090 -16.23040 -15.80628 -15.41215 -15.30717 -14.80343 -14.61330 -14.53564 -14.27719 -14.08113 -13.75127 -13.58647 -13.38101 -13.34566 -13.17691 -13.13939 -12.91970 -12.48665 -12.09633 -11.88426 -11.74615 -11.51704 -11.39285 -11.16985 -11.08958 -10.84727 -10.47291 -10.40943 -10.29230 -10.20376 -10.16107 -9.95552 -9.41878 -9.06593 -8.63424 -8.33716 -7.89843 -7.72407 -6.35230 -3.75627 1.28236 2.06248 2.17372 2.95961 3.20957 3.30930 3.36530 3.38570 3.99197 4.00919 4.09984 4.13048 4.34195 4.35433 4.48714 4.66433 4.76727 4.97708 5.07915 5.14212 5.18538 5.27470 5.32736 5.34737 5.49375 5.57644 5.58683 5.66769 5.74844 5.80100 5.84777 5.86717 6.06997 6.09808 6.13045 6.23112 6.32323 6.38806 6.51022 6.64882 6.68121 7.25361 7.41562 7.43478 7.54348 7.61874 8.14068 8.14552 8.69734 9.25365 9.62457 10.14912 10.82779 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.001688 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.269203 B =16586.731933 C =17077.279053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.128 4.128 5 C 0.116 3.884 6 N -0.602 5.602 7 C 0.077 3.923 8 C 0.600 3.400 9 O -0.542 6.542 10 C -0.059 4.059 11 C 0.034 3.966 12 N -0.461 5.461 13 C 0.069 3.931 14 C 0.181 3.819 15 N -0.460 5.460 16 C 0.046 3.954 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.012 0.988 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.189 0.811 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.211 0.789 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 27.061 19.385 33.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.167 4.167 5 C -0.006 4.006 6 N -0.334 5.334 7 C -0.066 4.066 8 C 0.388 3.612 9 O -0.419 6.419 10 C -0.187 4.187 11 C -0.105 4.105 12 N -0.142 5.142 13 C -0.073 4.073 14 C -0.102 4.102 15 N -0.179 5.179 16 C -0.085 4.085 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.031 0.969 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.206 0.794 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.228 0.772 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.087 26.408 19.773 33.056 hybrid contribution 0.349 -0.425 -0.577 0.798 sum -1.738 25.983 19.195 32.351 Atomic orbital electron populations 1.22553 0.86989 1.04248 0.98792 1.61522 1.08569 1.11548 1.42644 1.22037 1.00291 0.88731 0.95928 1.21919 1.01319 0.94634 0.98863 1.21492 1.01933 0.92820 0.84401 1.47607 1.21439 1.52392 1.11944 1.22163 0.84535 0.95116 1.04737 1.16952 0.83461 0.78758 0.82038 1.90813 1.22762 1.44706 1.83619 1.20563 0.96397 1.06978 0.94785 1.22631 0.99736 0.99625 0.88473 1.45357 1.19992 1.38551 1.10342 1.22170 1.03185 1.04210 0.77737 1.25335 0.92356 1.02985 0.89572 1.70760 1.19509 1.13839 1.13825 1.21861 1.00711 0.94076 0.91889 1.19778 0.85260 0.86724 0.85127 1.90481 1.43835 1.80186 1.31581 1.41875 1.49609 1.07353 1.21511 1.19750 1.32733 0.82338 1.07792 0.87898 1.25251 0.96946 1.00505 0.95356 1.69626 1.38329 1.35567 1.10934 0.85806 0.78162 0.82048 0.78353 1.19260 1.20845 1.20796 0.96933 0.88781 0.92158 0.95230 0.90733 0.90559 0.91751 0.90607 0.89626 0.93008 0.92100 0.87878 0.79445 0.90030 0.88945 0.89146 0.77246 0.93565 0.89394 0.77508 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.96 60.06 0.54 0.92 16 2 N -0.52 -9.45 4.50 -244.37 -1.10 -10.55 16 3 C 0.06 0.84 4.96 -3.82 -0.02 0.82 16 4 C -0.13 -1.71 5.46 -26.73 -0.15 -1.86 16 5 C 0.12 1.35 5.41 -4.04 -0.02 1.33 16 6 N -0.60 -7.26 2.87 -182.89 -0.53 -7.78 16 7 C 0.08 0.74 9.60 59.85 0.57 1.31 16 8 C 0.60 8.27 7.66 -12.57 -0.10 8.18 16 9 O -0.54 -9.02 16.45 5.26 0.09 -8.94 16 10 C -0.06 -0.67 6.66 -83.09 -0.55 -1.22 16 11 C 0.03 0.30 11.27 -16.64 -0.19 0.11 16 12 N -0.46 -2.60 3.13 -125.78 -0.39 -2.99 16 13 C 0.07 0.08 11.15 59.85 0.67 0.75 16 14 C 0.18 1.12 12.55 -89.91 -1.13 -0.01 16 15 N -0.46 -4.42 7.80 -11.03 -0.09 -4.51 16 16 C 0.05 0.88 5.45 -4.98 -0.03 0.86 16 17 C 0.45 11.01 7.47 -10.99 -0.08 10.93 16 18 O -0.58 -16.16 13.91 5.55 0.08 -16.08 16 19 N -0.57 -14.87 5.29 -10.97 -0.06 -14.93 16 20 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.13 13.05 55.50 0.72 -24.41 16 24 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 1.97 5.83 -51.93 -0.30 1.67 16 30 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 31 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 32 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 35 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 39 H 0.10 1.04 5.30 -51.93 -0.28 0.77 16 40 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 42 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 43 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 46 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 47 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -37.24 397.70 -8.38 -45.63 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.36 Total: 8.09 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -0.72 Total: 13.95 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -1.44 Total: -65.16 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.16 Total: -25.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.24 -8.38 -45.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673429714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.467 kcal (2) G-P(sol) polarization free energy of solvation -37.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds