Wall clock time and date at job start Tue Mar 31 2020 20:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00005 * 2 1 4 4 C 1.53004 * 109.47271 * 66.04663 * 3 2 1 5 5 C 1.53003 * 109.47096 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47047 * 180.02562 * 5 4 3 7 7 C 1.46508 * 119.99764 * 269.99964 * 6 5 4 8 8 C 1.34768 * 120.00025 * 90.00012 * 6 5 4 9 9 O 1.21622 * 120.00319 * 3.39658 * 8 6 5 10 10 C 1.47328 * 119.99896 * 183.39430 * 8 6 5 11 11 C 1.36425 * 126.23516 * 173.48051 * 10 8 6 12 12 N 1.35382 * 106.86864 * 179.97438 * 11 10 8 13 13 C 1.46501 * 126.13300 * 179.97438 * 12 11 10 14 14 C 1.35849 * 107.73041 * 0.26097 * 12 11 10 15 15 N 1.30170 * 109.00224 * 359.55676 * 14 12 11 16 16 C 1.46902 * 111.00165 * 236.04386 * 2 1 3 17 17 C 1.50699 * 109.47027 * 293.95855 * 16 2 1 18 18 O 1.21294 * 119.99921 * 359.97438 * 17 16 2 19 19 N 1.34771 * 119.99967 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99982 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00424 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00173 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99717 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00516 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47208 * 119.99943 * 24 22 20 27 27 H 1.48497 * 109.47385 * 240.00360 * 24 22 20 28 28 H 1.09000 * 109.47025 * 60.00236 * 1 2 3 29 29 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47220 * 299.99834 * 1 2 3 31 31 H 1.08998 * 109.47518 * 306.04230 * 3 2 1 32 32 H 1.09004 * 109.47261 * 186.04594 * 3 2 1 33 33 H 1.09000 * 109.46988 * 60.00120 * 4 3 2 34 34 H 1.09000 * 109.47143 * 299.99709 * 4 3 2 35 35 H 1.08995 * 109.46933 * 59.99808 * 5 4 3 36 36 H 1.09000 * 109.47060 * 299.99971 * 5 4 3 37 37 H 1.08989 * 109.46931 * 264.09988 * 7 6 5 38 38 H 1.09000 * 109.46752 * 24.09661 * 7 6 5 39 39 H 1.08996 * 109.46800 * 144.09476 * 7 6 5 40 40 H 1.07995 * 126.56375 * 359.97438 * 11 10 8 41 41 H 1.09001 * 109.46678 * 90.00030 * 13 12 11 42 42 H 1.08996 * 109.47360 * 209.99741 * 13 12 11 43 43 H 1.08999 * 109.47216 * 330.00377 * 13 12 11 44 44 H 1.07995 * 125.49768 * 179.71724 * 14 12 11 45 45 H 1.08999 * 109.46880 * 53.95396 * 16 2 1 46 46 H 1.08991 * 109.47098 * 173.95483 * 16 2 1 47 47 H 0.96994 * 120.00304 * 0.02562 * 19 17 16 48 48 H 0.97006 * 120.00180 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 7 1.8323 4.1423 2.5810 7 6 0.5759 4.8868 2.6975 8 6 2.6680 4.0616 3.6352 9 8 3.7389 3.4965 3.5206 10 6 2.2844 4.6580 4.9266 11 6 2.9683 4.5455 6.1017 12 7 2.2713 5.2420 7.0301 13 6 2.6308 5.3995 8.4416 14 6 1.1754 5.7633 6.4196 15 7 1.1862 5.4201 5.1640 16 6 1.9955 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9728 18 8 1.0053 -2.5832 -0.0029 19 7 2.0179 -3.1180 -1.9031 20 6 1.6921 -4.4412 -1.7530 21 1 1.1298 -4.7643 -0.8895 22 6 2.0845 -5.3666 -2.7124 23 7 2.7684 -4.9734 -3.7635 24 14 1.6401 -7.1693 -2.5083 25 1 0.8728 -7.3506 -1.2498 26 1 0.8118 -7.6085 -3.6600 27 1 2.8817 -7.9821 -2.4530 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5612 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5015 2.1492 34 1 0.5472 2.0845 1.4265 35 1 1.7464 4.0417 0.4876 36 1 3.2646 3.4582 1.2105 37 1 0.7624 5.9450 2.5153 38 1 -0.1377 4.5121 1.9636 39 1 0.1682 4.7568 3.6999 40 1 3.8893 4.0044 6.2608 41 1 3.2569 6.2838 8.5605 42 1 1.7248 5.5130 9.0368 43 1 3.1783 4.5189 8.7775 44 1 0.4188 6.3674 6.8981 45 1 1.5611 -0.3873 -2.0628 46 1 3.0796 -0.6611 -1.1755 47 1 2.5233 -2.8280 -2.6785 48 1 3.0427 -5.6194 -4.4331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673429714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:38 Heat of formation + Delta-G solvation = -11.402976 kcal Electronic energy + Delta-G solvation = -28238.534387 eV Core-core repulsion = 24136.567455 eV Total energy + Delta-G solvation = -4101.966932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.14345 -40.61015 -40.31324 -38.22385 -36.72737 -35.87572 -35.08154 -33.31003 -32.99372 -30.80227 -29.46519 -28.45531 -27.82291 -27.21074 -26.50469 -24.70230 -23.03794 -22.11853 -21.79169 -20.98299 -20.31555 -19.84035 -18.40952 -17.87218 -17.44048 -17.00473 -16.93666 -16.60054 -16.52869 -16.40159 -15.91189 -15.77650 -15.37834 -15.13334 -14.94872 -14.84764 -14.61432 -14.34376 -13.93971 -13.74490 -13.67665 -13.48774 -13.47992 -13.25072 -13.05169 -12.89548 -12.82461 -12.68658 -12.49855 -12.38527 -12.32527 -12.11006 -11.52420 -11.45588 -11.32601 -10.82278 -10.63137 -10.27877 -9.99212 -9.82752 -9.45655 -9.16315 -8.45842 -5.94494 0.56294 1.36654 1.41329 1.46725 1.55945 1.74525 2.06217 2.13685 2.29665 2.50728 2.82340 3.20805 3.39188 3.44281 3.81758 3.94840 4.01120 4.09118 4.17922 4.19825 4.35890 4.39850 4.43985 4.47678 4.49185 4.52044 4.55823 4.62459 4.62852 4.70955 4.77249 4.77765 4.89574 5.05205 5.08300 5.15359 5.17357 5.30810 5.41977 5.47776 5.68006 5.90724 6.09916 6.13674 6.25800 6.40972 6.62065 6.80130 7.14025 7.20555 7.57447 8.13862 8.71891 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.001688 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.269203 B =16586.731933 C =17077.279053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.545 5.545 3 C 0.063 3.937 4 C -0.115 4.115 5 C 0.120 3.880 6 N -0.604 5.604 7 C 0.080 3.920 8 C 0.589 3.411 9 O -0.587 6.587 10 C -0.097 4.097 11 C 0.033 3.967 12 N -0.454 5.454 13 C 0.062 3.938 14 C 0.193 3.807 15 N -0.486 5.486 16 C 0.058 3.942 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.271 1.271 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.192 0.808 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.253 0.747 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 28.862 19.945 35.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.270 5.270 3 C -0.065 4.065 4 C -0.154 4.154 5 C -0.003 4.003 6 N -0.334 5.334 7 C -0.062 4.062 8 C 0.378 3.622 9 O -0.468 6.468 10 C -0.225 4.225 11 C -0.108 4.108 12 N -0.134 5.134 13 C -0.078 4.078 14 C -0.091 4.091 15 N -0.206 5.206 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.209 0.791 41 H 0.114 0.886 42 H 0.136 0.864 43 H 0.114 0.886 44 H 0.269 0.731 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.836 28.255 20.330 34.925 hybrid contribution 0.551 -0.894 -0.629 1.225 sum -2.285 27.361 19.701 33.793 Atomic orbital electron populations 1.22410 0.86842 1.02082 1.00572 1.61458 1.09011 1.13932 1.42597 1.22073 1.00559 0.86765 0.97098 1.21772 1.01287 0.95172 0.97196 1.21471 1.01281 0.92167 0.85380 1.47758 1.21925 1.52049 1.11684 1.22234 0.83640 0.95215 1.05064 1.17450 0.83108 0.78338 0.83260 1.90763 1.24581 1.46902 1.84534 1.20432 0.98317 1.09195 0.94525 1.22751 0.99844 0.99597 0.88641 1.45614 1.19166 1.37071 1.11535 1.22530 1.04903 1.05141 0.75254 1.26175 0.92562 1.01638 0.88749 1.70667 1.19338 1.14630 1.15922 1.21731 1.01978 0.90183 0.93383 1.20807 0.83681 0.88842 0.83857 1.90459 1.45224 1.81480 1.33005 1.41935 1.50099 1.07051 1.22147 1.19697 1.34410 0.84081 1.08018 0.90432 1.26044 0.96278 1.04360 0.94654 1.69684 1.38197 1.37106 1.11198 0.84858 0.78245 0.76880 0.78249 1.19917 1.19453 1.19615 0.94752 0.92841 0.90681 0.92439 0.90366 0.94129 0.91242 0.87515 0.91026 0.92360 0.90547 0.88305 0.79069 0.88645 0.86350 0.88598 0.73079 0.91121 0.87537 0.77012 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 8.96 127.69 1.14 2.13 16 2 N -0.55 -19.46 4.50 -927.06 -4.17 -23.63 16 3 C 0.06 1.68 4.96 86.31 0.43 2.10 16 4 C -0.12 -3.01 5.46 30.60 0.17 -2.84 16 5 C 0.12 2.69 5.41 86.38 0.47 3.16 16 6 N -0.60 -14.54 2.87 -850.79 -2.44 -16.98 16 7 C 0.08 1.45 9.60 127.77 1.23 2.68 16 8 C 0.59 16.95 7.66 86.64 0.66 17.61 16 9 O -0.59 -20.82 16.45 -4.10 -0.07 -20.89 16 10 C -0.10 -2.25 6.66 40.51 0.27 -1.98 16 11 C 0.03 0.58 11.27 83.72 0.94 1.52 16 12 N -0.45 -4.28 3.13 -551.85 -1.73 -6.00 16 13 C 0.06 -0.03 11.15 127.77 1.42 1.40 16 14 C 0.19 1.94 12.55 180.10 2.26 4.21 16 15 N -0.49 -8.92 7.80 -188.81 -1.47 -10.40 16 16 C 0.06 2.19 5.45 85.56 0.47 2.65 16 17 C 0.44 22.20 7.47 87.66 0.66 22.85 16 18 O -0.62 -35.78 13.91 -3.07 -0.04 -35.82 16 19 N -0.57 -30.79 5.29 -306.99 -1.62 -32.41 16 20 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.92 13.05 21.66 0.28 -50.63 16 24 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 2.29 5.83 -2.39 -0.01 2.28 16 30 H 0.07 2.30 6.47 -2.38 -0.02 2.28 16 31 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 32 H 0.08 2.04 7.93 -2.38 -0.02 2.02 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.72 6.55 -2.39 -0.02 1.71 16 35 H 0.11 1.73 8.07 -2.39 -0.02 1.71 16 36 H 0.07 1.83 7.37 -2.39 -0.02 1.81 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.12 8.03 -2.39 -0.02 1.10 16 39 H 0.10 1.94 5.30 -2.39 -0.01 1.92 16 40 H 0.19 2.97 8.06 -2.91 -0.02 2.94 16 41 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.12 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.25 0.02 8.06 -2.91 -0.02 -0.01 16 45 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 46 H 0.11 3.59 7.93 -2.39 -0.02 3.57 16 47 H 0.40 20.10 7.90 -92.71 -0.73 19.36 16 48 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -84.78 397.70 2.40 -82.38 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.24 Total: 31.70 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 11.40 Total: 36.47 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -11.15 Total: -140.05 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -0.11 Total: -56.71 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -84.78 2.40 -82.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673429714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.975 kcal (2) G-P(sol) polarization free energy of solvation -84.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds