Wall clock time and date at job start Tue Mar 31 2020 21:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99854 * 2 1 4 4 H 1.08000 * 119.99901 * 324.64597 * 3 2 1 5 5 C 1.38813 * 120.00004 * 144.64609 * 3 2 1 6 6 N 1.31614 * 119.99738 * 160.92341 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 340.91511 * 5 3 2 8 8 H 1.48509 * 109.46626 * 95.35576 * 7 5 3 9 9 H 1.48499 * 109.47057 * 215.35165 * 7 5 3 10 10 H 1.48498 * 109.47258 * 335.36071 * 7 5 3 11 11 C 1.46498 * 119.99835 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47063 * 90.00696 * 11 2 1 13 13 C 1.52995 * 109.47567 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.47629 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99949 * 270.00059 * 14 13 12 16 16 C 1.34771 * 120.00253 * 89.99473 * 14 13 12 17 17 O 1.21290 * 120.00002 * 5.34227 * 16 14 13 18 18 C 1.50695 * 120.00575 * 185.34039 * 16 14 13 19 19 H 1.09004 * 109.44189 * 307.25249 * 18 16 14 20 20 C 1.53116 * 109.44693 * 187.31620 * 18 16 14 21 21 C 1.53480 * 109.38102 * 170.23931 * 20 18 16 22 22 C 1.50799 * 108.07834 * 48.89939 * 21 20 18 23 23 N 1.29602 * 128.73691 * 164.07507 * 22 21 20 24 24 N 1.28873 * 109.80048 * 180.09231 * 23 22 21 25 25 C 1.31379 * 109.92488 * 359.97438 * 24 23 22 26 26 O 1.35537 * 126.57716 * 179.97438 * 25 24 23 27 27 N 1.35428 * 106.84629 * 359.91730 * 25 24 23 28 28 C 1.46201 * 129.14580 * 180.17741 * 27 25 24 29 29 H 1.09003 * 109.47036 * 265.10284 * 1 2 3 30 30 H 1.08997 * 109.46986 * 25.10549 * 1 2 3 31 31 H 1.09003 * 109.46818 * 145.10577 * 1 2 3 32 32 H 0.97005 * 119.99994 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47861 * 330.00272 * 11 2 1 34 34 H 1.09000 * 109.46807 * 209.99604 * 11 2 1 35 35 H 1.08996 * 109.47128 * 59.99127 * 12 11 2 36 36 H 1.09004 * 109.46971 * 299.99637 * 12 11 2 37 37 H 1.08999 * 109.46841 * 59.99141 * 13 12 11 38 38 H 1.09004 * 109.46812 * 299.99898 * 13 12 11 39 39 H 1.08995 * 109.46964 * 267.46991 * 15 14 13 40 40 H 1.09003 * 109.47285 * 27.47128 * 15 14 13 41 41 H 1.08996 * 109.46931 * 147.47253 * 15 14 13 42 42 H 1.09001 * 109.48323 * 50.26937 * 20 18 16 43 43 H 1.08995 * 109.50482 * 290.22063 * 20 18 16 44 44 H 1.08990 * 109.74033 * 168.54346 * 21 20 18 45 45 H 1.08999 * 109.73758 * 289.25708 * 21 20 18 46 46 H 0.96694 * 113.99884 * 269.92408 * 26 25 24 47 47 H 1.09003 * 109.60242 * 43.17601 * 28 27 25 48 48 H 1.09000 * 109.60604 * 282.69237 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7590 2.0350 -0.5412 5 6 3.3458 1.2968 0.6956 6 7 4.1855 2.2691 0.4098 7 14 3.7635 0.0660 2.0374 8 1 4.6112 -1.0142 1.4716 9 1 4.5005 0.7537 3.1278 10 1 2.5111 -0.5199 2.5790 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 6 3.2181 -3.0356 -1.4413 14 7 3.4619 -3.4594 -2.8223 15 6 2.4853 -4.3061 -3.5119 16 6 4.5845 -3.0703 -3.4584 17 8 5.4379 -2.4513 -2.8586 18 6 4.7796 -3.4042 -4.9149 19 1 4.6371 -4.4745 -5.0640 20 6 6.1975 -3.0144 -5.3417 21 6 6.4787 -3.5718 -6.7438 22 6 5.3178 -3.2063 -7.6342 23 7 5.2524 -3.2213 -8.9285 24 7 4.0834 -2.8365 -9.3110 25 6 3.3401 -2.5553 -8.2648 26 8 2.0564 -2.1207 -8.2794 27 7 4.1021 -2.7842 -7.1689 28 6 3.7569 -2.6320 -5.7564 29 1 -0.3633 -0.0877 1.0239 30 1 -0.3633 0.9306 -0.4360 31 1 -0.3633 -0.8429 -0.5879 32 1 5.0213 2.3469 0.8962 33 1 1.6085 -2.0282 0.5147 34 1 3.1500 -1.1381 0.5143 35 1 3.0416 -0.9515 -1.9558 36 1 1.5002 -1.8415 -1.9556 37 1 2.6294 -3.7952 -0.9270 38 1 4.1706 -2.9047 -0.9276 39 1 2.7537 -5.3539 -3.3774 40 1 1.4932 -4.1289 -3.0965 41 1 2.4823 -4.0654 -4.5750 42 1 6.9167 -3.4283 -4.6349 43 1 6.2871 -1.9282 -5.3576 44 1 7.3962 -3.1341 -7.1368 45 1 6.5785 -4.6562 -6.6956 46 1 1.9673 -1.1582 -8.3059 47 1 2.7590 -3.0328 -5.5786 48 1 3.7833 -1.5766 -5.4852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673450496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:39 Heat of formation + Delta-G solvation = 48.077577 kcal Electronic energy + Delta-G solvation = -30297.009871 eV Core-core repulsion = 26197.622210 eV Total energy + Delta-G solvation = -4099.387661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.56437 -40.49739 -38.05785 -37.33548 -36.55041 -35.64543 -33.65436 -32.41442 -31.56500 -30.76846 -29.08475 -27.36182 -26.55665 -25.84528 -24.92497 -23.57729 -22.64784 -22.03709 -20.77730 -20.43939 -19.47342 -18.93710 -17.72863 -17.20319 -16.89130 -16.75243 -16.09237 -15.60357 -15.31584 -15.25466 -14.99631 -14.79192 -14.46274 -14.33475 -13.80260 -13.63304 -13.28972 -13.12730 -12.93894 -12.74148 -12.65321 -12.48120 -12.20824 -12.09910 -12.01392 -11.92765 -11.63658 -11.45392 -11.39925 -11.20676 -10.89159 -10.56205 -10.53093 -10.48394 -10.44002 -9.95087 -9.78785 -9.46828 -9.33080 -8.79057 -8.55972 -6.90147 -5.99573 -3.42353 1.24160 1.69980 2.35449 2.41904 2.75252 3.28628 3.36843 3.43611 3.47631 3.73038 3.88332 4.00490 4.04656 4.44973 4.49529 4.54397 4.57083 4.83851 4.87370 4.92974 4.99214 5.07420 5.08882 5.23259 5.27125 5.35149 5.36958 5.47455 5.54456 5.59861 5.64097 5.75352 5.76961 5.88073 5.99435 6.14079 6.18712 6.23012 6.38481 6.54182 6.63262 6.67014 6.92090 6.95568 7.17704 7.96505 8.02078 8.32568 8.32951 8.94150 9.68662 10.06805 11.16196 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.002965 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.287436 B = 9440.652739 C = 9795.340801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.614 5.614 3 C -0.272 4.272 4 H 0.079 0.921 5 C 0.033 3.967 6 N -0.903 5.903 7 Si 0.886 3.114 8 H -0.284 1.284 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.142 3.858 12 C -0.147 4.147 13 C 0.112 3.888 14 N -0.613 5.613 15 C 0.067 3.933 16 C 0.518 3.482 17 O -0.513 6.513 18 C -0.121 4.121 19 H 0.108 0.892 20 C -0.109 4.109 21 C -0.032 4.032 22 C 0.192 3.808 23 N -0.275 5.275 24 N -0.288 5.288 25 C 0.354 3.646 26 O -0.436 6.436 27 N -0.481 5.481 28 C 0.108 3.892 29 H 0.007 0.993 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.409 0.591 47 H 0.111 0.889 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -16.063 -12.527 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.338 5.338 3 C -0.401 4.401 4 H 0.097 0.903 5 C -0.167 4.167 6 N -0.544 5.544 7 Si 0.718 3.282 8 H -0.212 1.212 9 H -0.231 1.231 10 H -0.197 1.197 11 C 0.015 3.985 12 C -0.188 4.188 13 C -0.010 4.010 14 N -0.346 5.346 15 C -0.076 4.076 16 C 0.303 3.697 17 O -0.387 6.387 18 C -0.143 4.143 19 H 0.126 0.874 20 C -0.148 4.148 21 C -0.072 4.072 22 C -0.075 4.075 23 N -0.117 5.117 24 N -0.139 5.139 25 C 0.049 3.951 26 O -0.236 6.236 27 N -0.184 5.184 28 C -0.015 4.015 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.267 0.733 47 H 0.129 0.871 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.824 -16.309 -13.559 21.225 hybrid contribution -0.447 0.113 2.093 2.143 sum -1.272 -16.196 -11.466 19.885 Atomic orbital electron populations 1.21044 0.84446 0.98972 0.97370 1.44043 1.00825 1.01967 1.86935 1.18811 1.04419 0.90031 1.26798 0.90309 1.25404 0.97009 0.96550 0.97735 1.69819 1.09435 1.33822 1.41328 0.86795 0.77841 0.80729 0.82842 1.21188 1.23106 1.19726 1.21057 0.96241 0.87883 0.93297 1.22488 0.99338 0.95570 1.01362 1.21681 1.01850 0.96951 0.80564 1.47926 1.20451 1.51063 1.15192 1.22063 0.93483 0.94487 0.97584 1.20044 0.81929 0.79774 0.87907 1.90809 1.41738 1.38878 1.67257 1.21669 0.97296 1.02392 0.92902 0.87425 1.21595 0.94411 1.03313 0.95452 1.20343 0.92859 1.02750 0.91238 1.24713 0.87567 1.02578 0.92592 1.74029 1.11549 1.18151 1.07972 1.74867 0.98526 1.18571 1.21904 1.21838 0.86488 1.03835 0.82920 1.84891 1.14902 1.29370 1.94452 1.46638 1.12342 1.51132 1.08285 1.22188 1.00009 1.03329 0.75966 0.97533 0.93652 0.95649 0.92657 0.94264 0.93078 0.90911 0.92794 0.90769 0.89660 0.92261 0.90180 0.91199 0.88287 0.89768 0.87180 0.88247 0.73303 0.87111 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.45 10.70 59.85 0.64 3.10 16 2 N -0.61 -14.41 2.54 -181.12 -0.46 -14.87 16 3 C -0.27 -7.62 9.95 -15.06 -0.15 -7.77 16 4 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 5 C 0.03 0.97 5.37 -17.43 -0.09 0.87 16 6 N -0.90 -27.81 13.97 55.49 0.78 -27.03 16 7 Si 0.89 22.48 24.73 -169.99 -4.20 18.27 16 8 H -0.28 -6.98 6.73 56.52 0.38 -6.60 16 9 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 10 H -0.27 -6.69 7.06 56.52 0.40 -6.29 16 11 C 0.14 2.92 4.47 -4.04 -0.02 2.91 16 12 C -0.15 -2.54 5.86 -26.73 -0.16 -2.70 16 13 C 0.11 1.57 5.44 -4.05 -0.02 1.55 16 14 N -0.61 -6.94 2.87 -181.58 -0.52 -7.46 16 15 C 0.07 0.47 9.99 59.85 0.60 1.07 16 16 C 0.52 6.45 6.93 -10.99 -0.08 6.38 16 17 O -0.51 -8.88 15.47 5.55 0.09 -8.79 16 18 C -0.12 -1.03 1.71 -91.55 -0.16 -1.19 16 19 H 0.11 0.70 7.72 -51.93 -0.40 0.30 16 20 C -0.11 -0.91 4.62 -26.42 -0.12 -1.04 16 21 C -0.03 -0.23 6.34 -27.59 -0.17 -0.41 16 22 C 0.19 2.03 7.78 -154.44 -1.20 0.83 16 23 N -0.28 -3.69 12.17 32.93 0.40 -3.29 16 24 N -0.29 -4.01 12.24 29.53 0.36 -3.65 16 25 C 0.35 3.99 9.30 -89.29 -0.83 3.16 16 26 O -0.44 -3.79 13.64 -18.30 -0.25 -4.04 16 27 N -0.48 -4.79 3.16 -115.39 -0.36 -5.15 16 28 C 0.11 0.90 5.99 -4.04 -0.02 0.88 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 31 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.05 1.19 2.70 -51.93 -0.14 1.05 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.09 1.42 7.36 -51.93 -0.38 1.04 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.52 8.05 -51.93 -0.42 0.11 16 41 H 0.07 0.40 3.99 -51.93 -0.21 0.19 16 42 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16 43 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 44 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.41 1.61 9.06 45.56 0.41 2.02 16 47 H 0.11 0.77 5.35 -51.93 -0.28 0.50 16 48 H 0.10 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -37.69 382.00 -6.67 -44.36 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.46 Total: -1.75 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -1.79 Total: 7.65 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.19 Total: -61.46 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.16 Total: -12.83 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.20 Total: 18.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.69 -6.67 -44.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673450496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.435 kcal (2) G-P(sol) polarization free energy of solvation -37.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds