Wall clock time and date at job start Tue Mar 31 2020 21:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99854 * 2 1 4 4 H 1.08000 * 119.99901 * 324.64597 * 3 2 1 5 5 C 1.38813 * 120.00004 * 144.64609 * 3 2 1 6 6 N 1.31614 * 119.99738 * 160.92341 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 340.91511 * 5 3 2 8 8 H 1.48509 * 109.46626 * 95.35576 * 7 5 3 9 9 H 1.48499 * 109.47057 * 215.35165 * 7 5 3 10 10 H 1.48498 * 109.47258 * 335.36071 * 7 5 3 11 11 C 1.46498 * 119.99835 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47063 * 90.00696 * 11 2 1 13 13 C 1.52995 * 109.47567 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.47629 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99949 * 270.00059 * 14 13 12 16 16 C 1.34771 * 120.00253 * 89.99473 * 14 13 12 17 17 O 1.21290 * 120.00002 * 5.34227 * 16 14 13 18 18 C 1.50695 * 120.00575 * 185.34039 * 16 14 13 19 19 H 1.09004 * 109.44189 * 307.25249 * 18 16 14 20 20 C 1.53116 * 109.44693 * 187.31620 * 18 16 14 21 21 C 1.53480 * 109.38102 * 170.23931 * 20 18 16 22 22 C 1.50799 * 108.07834 * 48.89939 * 21 20 18 23 23 N 1.29602 * 128.73691 * 164.07507 * 22 21 20 24 24 N 1.28873 * 109.80048 * 180.09231 * 23 22 21 25 25 C 1.31379 * 109.92488 * 359.97438 * 24 23 22 26 26 O 1.35537 * 126.57716 * 179.97438 * 25 24 23 27 27 N 1.35428 * 106.84629 * 359.91730 * 25 24 23 28 28 C 1.46201 * 129.14580 * 180.17741 * 27 25 24 29 29 H 1.09003 * 109.47036 * 265.10284 * 1 2 3 30 30 H 1.08997 * 109.46986 * 25.10549 * 1 2 3 31 31 H 1.09003 * 109.46818 * 145.10577 * 1 2 3 32 32 H 0.97005 * 119.99994 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47861 * 330.00272 * 11 2 1 34 34 H 1.09000 * 109.46807 * 209.99604 * 11 2 1 35 35 H 1.08996 * 109.47128 * 59.99127 * 12 11 2 36 36 H 1.09004 * 109.46971 * 299.99637 * 12 11 2 37 37 H 1.08999 * 109.46841 * 59.99141 * 13 12 11 38 38 H 1.09004 * 109.46812 * 299.99898 * 13 12 11 39 39 H 1.08995 * 109.46964 * 267.46991 * 15 14 13 40 40 H 1.09003 * 109.47285 * 27.47128 * 15 14 13 41 41 H 1.08996 * 109.46931 * 147.47253 * 15 14 13 42 42 H 1.09001 * 109.48323 * 50.26937 * 20 18 16 43 43 H 1.08995 * 109.50482 * 290.22063 * 20 18 16 44 44 H 1.08990 * 109.74033 * 168.54346 * 21 20 18 45 45 H 1.08999 * 109.73758 * 289.25708 * 21 20 18 46 46 H 0.96694 * 113.99884 * 269.92408 * 26 25 24 47 47 H 1.09003 * 109.60242 * 43.17601 * 28 27 25 48 48 H 1.09000 * 109.60604 * 282.69237 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7590 2.0350 -0.5412 5 6 3.3458 1.2968 0.6956 6 7 4.1855 2.2691 0.4098 7 14 3.7635 0.0660 2.0374 8 1 4.6112 -1.0142 1.4716 9 1 4.5005 0.7537 3.1278 10 1 2.5111 -0.5199 2.5790 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 6 3.2181 -3.0356 -1.4413 14 7 3.4619 -3.4594 -2.8223 15 6 2.4853 -4.3061 -3.5119 16 6 4.5845 -3.0703 -3.4584 17 8 5.4379 -2.4513 -2.8586 18 6 4.7796 -3.4042 -4.9149 19 1 4.6371 -4.4745 -5.0640 20 6 6.1975 -3.0144 -5.3417 21 6 6.4787 -3.5718 -6.7438 22 6 5.3178 -3.2063 -7.6342 23 7 5.2524 -3.2213 -8.9285 24 7 4.0834 -2.8365 -9.3110 25 6 3.3401 -2.5553 -8.2648 26 8 2.0564 -2.1207 -8.2794 27 7 4.1021 -2.7842 -7.1689 28 6 3.7569 -2.6320 -5.7564 29 1 -0.3633 -0.0877 1.0239 30 1 -0.3633 0.9306 -0.4360 31 1 -0.3633 -0.8429 -0.5879 32 1 5.0213 2.3469 0.8962 33 1 1.6085 -2.0282 0.5147 34 1 3.1500 -1.1381 0.5143 35 1 3.0416 -0.9515 -1.9558 36 1 1.5002 -1.8415 -1.9556 37 1 2.6294 -3.7952 -0.9270 38 1 4.1706 -2.9047 -0.9276 39 1 2.7537 -5.3539 -3.3774 40 1 1.4932 -4.1289 -3.0965 41 1 2.4823 -4.0654 -4.5750 42 1 6.9167 -3.4283 -4.6349 43 1 6.2871 -1.9282 -5.3576 44 1 7.3962 -3.1341 -7.1368 45 1 6.5785 -4.6562 -6.6956 46 1 1.9673 -1.1582 -8.3059 47 1 2.7590 -3.0328 -5.5786 48 1 3.7833 -1.5766 -5.4852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673450496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:38 Heat of formation + Delta-G solvation = 18.000674 kcal Electronic energy + Delta-G solvation = -30298.314103 eV Core-core repulsion = 26197.622210 eV Total energy + Delta-G solvation = -4100.691894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.38807 -41.43187 -38.76572 -38.41886 -37.85904 -36.85721 -34.39170 -34.04453 -33.13928 -31.85475 -29.91653 -28.35460 -27.95715 -27.24006 -25.79711 -24.57486 -23.45584 -23.38350 -22.50915 -21.26375 -20.24110 -19.76785 -18.83106 -18.51756 -17.97633 -17.68240 -17.44704 -17.10730 -16.28065 -16.03436 -15.85973 -15.75374 -15.52412 -15.32411 -15.21807 -14.92687 -14.81246 -14.35453 -14.01942 -13.83770 -13.60776 -13.45586 -13.34789 -13.21083 -12.99895 -12.87582 -12.86605 -12.77031 -12.46070 -12.36212 -12.24474 -12.20647 -12.10154 -11.73058 -11.37808 -11.30439 -11.24218 -10.98089 -10.66541 -10.16769 -9.75289 -8.82366 -8.22226 -5.60586 0.47055 0.91316 1.26877 1.36342 1.44840 1.47722 1.55676 1.88566 2.38473 2.64226 3.01688 3.03886 3.15750 3.29137 3.37695 3.42176 3.78672 3.83077 3.88755 4.02392 4.17685 4.23334 4.25940 4.34715 4.39575 4.47148 4.52714 4.56165 4.64537 4.67008 4.73510 4.77491 4.77623 4.87838 4.92739 4.96489 5.01109 5.09245 5.11487 5.19576 5.35311 5.46796 5.52079 5.90078 6.10585 6.28683 6.34475 6.95532 7.04271 7.47227 7.61423 7.99686 8.97643 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.002965 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.287436 B = 9440.652739 C = 9795.340801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.630 5.630 3 C -0.259 4.259 4 H 0.040 0.960 5 C -0.029 4.029 6 N -0.955 5.955 7 Si 0.954 3.046 8 H -0.278 1.278 9 H -0.313 1.313 10 H -0.252 1.252 11 C 0.133 3.867 12 C -0.130 4.130 13 C 0.118 3.882 14 N -0.610 5.610 15 C 0.060 3.940 16 C 0.514 3.486 17 O -0.572 6.572 18 C -0.109 4.109 19 H 0.141 0.859 20 C -0.106 4.106 21 C -0.024 4.024 22 C 0.198 3.802 23 N -0.309 5.309 24 N -0.328 5.328 25 C 0.360 3.640 26 O -0.437 6.437 27 N -0.478 5.478 28 C 0.112 3.888 29 H 0.017 0.983 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.121 0.879 45 H 0.128 0.872 46 H 0.429 0.571 47 H 0.133 0.867 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -19.817 -12.342 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.355 5.355 3 C -0.389 4.389 4 H 0.058 0.942 5 C -0.224 4.224 6 N -0.600 5.600 7 Si 0.784 3.216 8 H -0.205 1.205 9 H -0.242 1.242 10 H -0.176 1.176 11 C 0.007 3.993 12 C -0.171 4.171 13 C -0.005 4.005 14 N -0.342 5.342 15 C -0.081 4.081 16 C 0.301 3.699 17 O -0.451 6.451 18 C -0.130 4.130 19 H 0.158 0.842 20 C -0.145 4.145 21 C -0.063 4.063 22 C -0.070 4.070 23 N -0.150 5.150 24 N -0.179 5.179 25 C 0.054 3.946 26 O -0.240 6.240 27 N -0.181 5.181 28 C -0.011 4.011 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.290 0.710 47 H 0.150 0.850 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.848 -20.110 -13.406 24.336 hybrid contribution 0.021 1.331 1.970 2.378 sum -2.827 -18.779 -11.436 22.168 Atomic orbital electron populations 1.21185 0.81779 1.00395 0.98614 1.44228 1.02603 1.01375 1.87257 1.18727 1.04225 0.90981 1.24955 0.94184 1.26090 0.97277 0.98907 1.00168 1.69968 1.10215 1.36772 1.43022 0.85696 0.78209 0.78386 0.79300 1.20537 1.24186 1.17609 1.21215 0.95222 0.87484 0.95333 1.22228 1.00114 0.95891 0.98821 1.21463 1.00282 0.96371 0.82407 1.47989 1.20911 1.50878 1.14391 1.22381 0.92871 0.94890 0.97945 1.20684 0.81448 0.78580 0.89177 1.90791 1.43939 1.41545 1.68802 1.21612 0.97271 1.04172 0.89962 0.84159 1.21536 0.94654 1.01962 0.96317 1.20484 0.91964 1.04423 0.89418 1.25286 0.88293 1.01200 0.92266 1.73946 1.11815 1.19783 1.09473 1.74764 0.99340 1.20333 1.23444 1.21868 0.86912 1.03009 0.82835 1.84854 1.13470 1.31305 1.94338 1.46669 1.12063 1.50940 1.08472 1.22228 1.00998 1.02753 0.75076 0.96520 0.94440 0.91627 0.93032 0.90268 0.95968 0.95978 0.90235 0.86729 0.92970 0.89835 0.88845 0.89824 0.88119 0.92121 0.86097 0.85420 0.70967 0.84964 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.45 10.70 127.77 1.37 5.82 16 2 N -0.63 -28.71 2.54 -726.92 -1.85 -30.56 16 3 C -0.26 -14.83 9.95 84.03 0.84 -13.99 16 4 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 5 C -0.03 -1.71 5.37 84.86 0.46 -1.26 16 6 N -0.95 -61.59 13.97 21.65 0.30 -61.29 16 7 Si 0.95 47.36 24.73 68.60 1.70 49.05 16 8 H -0.28 -13.33 6.73 99.48 0.67 -12.66 16 9 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 10 H -0.25 -11.52 7.06 99.48 0.70 -10.81 16 11 C 0.13 5.16 4.47 86.38 0.39 5.54 16 12 C -0.13 -4.26 5.86 30.59 0.18 -4.08 16 13 C 0.12 3.02 5.44 86.38 0.47 3.49 16 14 N -0.61 -12.10 2.87 -846.77 -2.43 -14.53 16 15 C 0.06 0.55 9.99 127.77 1.28 1.82 16 16 C 0.51 12.20 6.93 87.66 0.61 12.80 16 17 O -0.57 -20.36 15.47 -3.06 -0.05 -20.41 16 18 C -0.11 -1.61 1.71 -11.40 -0.02 -1.63 16 19 H 0.14 1.22 7.72 -2.38 -0.02 1.20 16 20 C -0.11 -1.66 4.62 30.79 0.14 -1.52 16 21 C -0.02 -0.29 6.34 30.04 0.19 -0.10 16 22 C 0.20 3.88 7.78 137.84 1.07 4.95 16 23 N -0.31 -8.11 12.17 -49.73 -0.61 -8.71 16 24 N -0.33 -9.01 12.24 -173.86 -2.13 -11.14 16 25 C 0.36 7.67 9.30 179.88 1.67 9.34 16 26 O -0.44 -6.81 13.64 -88.41 -1.21 -8.02 16 27 N -0.48 -8.73 3.16 -630.26 -1.99 -10.72 16 28 C 0.11 1.65 5.99 86.54 0.52 2.16 16 29 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 1.37 8.00 -2.39 -0.02 1.35 16 31 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 32 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 33 H 0.08 2.46 8.07 -2.39 -0.02 2.45 16 34 H 0.02 1.01 2.70 -2.39 -0.01 1.01 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 38 H 0.05 1.71 7.36 -2.39 -0.02 1.69 16 39 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.68 8.05 -2.39 -0.02 0.66 16 41 H 0.08 0.54 3.99 -2.39 -0.01 0.53 16 42 H 0.10 1.58 7.90 -2.39 -0.02 1.56 16 43 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.43 2.69 9.06 -74.06 -0.67 2.02 16 47 H 0.13 1.37 5.35 -2.39 -0.01 1.36 16 48 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 Total: -1.00 -88.30 382.00 1.17 -87.13 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.28 Total: 5.84 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 9.15 Total: 23.35 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -8.71 Total: -136.94 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.25 Total: -28.42 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.70 Total: 49.05 kcal Total: -88.30 1.17 -87.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673450496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.127 kcal (2) G-P(sol) polarization free energy of solvation -88.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds