Wall clock time and date at job start Tue Mar 31 2020 21:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99721 * 2 1 4 4 H 1.07999 * 119.99814 * 201.25080 * 3 2 1 5 5 C 1.38813 * 119.99934 * 21.26314 * 3 2 1 6 6 N 1.31617 * 120.00446 * 20.90291 * 5 3 2 7 7 Si 1.86801 * 119.99673 * 200.90869 * 5 3 2 8 8 H 1.48497 * 109.47325 * 94.98285 * 7 5 3 9 9 H 1.48500 * 109.47097 * 214.98159 * 7 5 3 10 10 H 1.48501 * 109.47041 * 334.98429 * 7 5 3 11 11 C 1.46499 * 120.00263 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46867 * 269.99872 * 11 2 1 13 13 C 1.53003 * 109.47221 * 179.97438 * 12 11 2 14 14 N 1.46495 * 109.47014 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00541 * 90.00066 * 14 13 12 16 16 C 1.34781 * 119.99704 * 269.99806 * 14 13 12 17 17 O 1.21286 * 119.99961 * 4.60760 * 16 14 13 18 18 C 1.50705 * 120.00069 * 184.61011 * 16 14 13 19 19 H 1.09004 * 109.44364 * 45.01259 * 18 16 14 20 20 C 1.53114 * 109.44427 * 164.94596 * 18 16 14 21 21 C 1.53496 * 109.36613 * 189.84293 * 20 18 16 22 22 C 1.50799 * 108.06008 * 311.06934 * 21 20 18 23 23 N 1.29600 * 128.73113 * 195.98582 * 22 21 20 24 24 N 1.28876 * 109.79300 * 179.80402 * 23 22 21 25 25 C 1.31375 * 109.92910 * 0.03318 * 24 23 22 26 26 O 1.35540 * 126.57737 * 180.02562 * 25 24 23 27 27 N 1.35430 * 106.84467 * 0.05562 * 25 24 23 28 28 C 1.46200 * 129.14346 * 179.83371 * 27 25 24 29 29 H 1.09002 * 109.47189 * 274.94647 * 1 2 3 30 30 H 1.09005 * 109.47268 * 34.94789 * 1 2 3 31 31 H 1.09003 * 109.47054 * 154.94848 * 1 2 3 32 32 H 0.96999 * 120.00421 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47491 * 150.00289 * 11 2 1 34 34 H 1.09000 * 109.47129 * 29.99340 * 11 2 1 35 35 H 1.09004 * 109.46913 * 59.99897 * 12 11 2 36 36 H 1.09000 * 109.47185 * 300.00053 * 12 11 2 37 37 H 1.08997 * 109.46701 * 300.00309 * 13 12 11 38 38 H 1.08998 * 109.46758 * 59.99569 * 13 12 11 39 39 H 1.09000 * 109.46990 * 84.28796 * 15 14 13 40 40 H 1.08994 * 109.47065 * 204.28806 * 15 14 13 41 41 H 1.09000 * 109.47066 * 324.29445 * 15 14 13 42 42 H 1.09005 * 109.48778 * 309.77517 * 20 18 16 43 43 H 1.09000 * 109.48635 * 69.83423 * 20 18 16 44 44 H 1.08996 * 109.71813 * 191.44193 * 21 20 18 45 45 H 1.08997 * 109.81513 * 70.74607 * 21 20 18 46 46 H 0.96698 * 113.99490 * 270.03517 * 26 25 24 47 47 H 1.08996 * 109.61089 * 77.27604 * 28 27 25 48 48 H 1.09004 * 109.73986 * 316.86479 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1745 1.2178 -0.3390 5 6 1.5264 2.3472 0.4360 6 7 0.4679 2.2734 1.2147 7 14 2.1899 4.0145 -0.0828 8 1 1.4522 4.4900 -1.2806 9 1 2.0109 4.9854 1.0265 10 1 3.6341 3.8936 -0.4067 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4418 13 6 3.2171 -3.0363 1.4413 14 7 3.4607 -3.4600 2.8223 15 6 2.4836 -4.3058 3.5123 16 6 4.5839 -3.0716 3.4581 17 8 5.3521 -2.3042 2.9178 18 6 4.8852 -3.5910 4.8404 19 1 4.7007 -4.6648 4.8727 20 6 6.3526 -3.3155 5.1797 21 6 6.7236 -4.0551 6.4725 22 6 5.6638 -3.7561 7.5028 23 7 5.7091 -3.9290 8.7864 24 7 4.5995 -3.5454 9.3178 25 6 3.7851 -3.1054 8.3856 26 8 2.5323 -2.6219 8.5700 27 7 4.4371 -3.2280 7.2050 28 6 3.9806 -2.8867 5.8587 29 1 -0.3634 0.0886 1.0238 30 1 -0.3634 0.8424 -0.5887 31 1 -0.3633 -0.9310 -0.4352 32 1 0.0321 3.0849 1.5191 33 1 3.1499 -1.1381 -0.5143 34 1 1.6084 -2.0282 -0.5146 35 1 1.5001 -1.8415 1.9555 36 1 3.0416 -0.9515 1.9559 37 1 2.6276 -3.7954 0.9272 38 1 4.1694 -2.9061 0.9273 39 1 2.6641 -5.3504 3.2587 40 1 2.5827 -4.1710 4.5893 41 1 1.4770 -4.0254 3.2021 42 1 6.9864 -3.6671 4.3655 43 1 6.4989 -2.2443 5.3181 44 1 7.6930 -3.7076 6.8298 45 1 6.7633 -5.1283 6.2859 46 1 1.8403 -3.2960 8.5266 47 1 4.0390 -1.8078 5.7151 48 1 2.9510 -3.2183 5.7240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673450497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:44 Heat of formation + Delta-G solvation = 39.231095 kcal Electronic energy + Delta-G solvation = -29908.456886 eV Core-core repulsion = 25808.685612 eV Total energy + Delta-G solvation = -4099.771274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.57377 -40.49274 -38.07156 -37.31874 -36.34672 -35.47363 -33.67731 -32.60301 -31.41962 -30.16414 -29.06654 -27.25674 -26.20439 -25.75274 -24.92447 -23.60374 -22.66114 -22.15121 -20.52063 -20.25695 -19.34081 -19.07589 -17.77416 -17.26977 -16.72725 -16.52418 -16.19598 -15.80311 -15.18301 -14.86380 -14.81142 -14.61717 -14.45348 -14.33247 -13.89045 -13.50442 -13.12435 -13.02338 -12.91167 -12.80115 -12.58359 -12.51537 -12.21220 -12.04404 -11.70835 -11.63266 -11.45453 -11.39639 -11.03497 -10.86474 -10.73247 -10.55157 -10.51383 -10.48251 -10.10402 -9.99881 -9.85789 -9.76692 -9.33855 -8.78749 -8.51965 -6.78502 -5.75440 -3.16283 1.25021 1.68007 2.32474 2.42547 2.75417 3.35312 3.39275 3.46488 3.48099 3.71965 3.86833 3.96290 4.04311 4.43064 4.51929 4.52734 4.57741 4.81891 4.87285 4.98336 5.04427 5.07312 5.24173 5.28211 5.34479 5.37837 5.43075 5.46341 5.50132 5.58280 5.71141 5.72552 5.97463 6.02049 6.08838 6.13515 6.39779 6.51688 6.66675 6.81363 6.95657 7.07370 7.19217 7.26482 7.62733 7.82378 7.95882 8.31707 8.38193 9.21617 9.86894 10.35069 11.30295 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.002701 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.229845 B =10362.350390 C =10942.159022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.600 5.600 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.903 5.903 7 Si 0.899 3.101 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.278 1.278 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.116 3.884 14 N -0.611 5.611 15 C 0.068 3.932 16 C 0.518 3.482 17 O -0.517 6.517 18 C -0.121 4.121 19 H 0.107 0.893 20 C -0.109 4.109 21 C -0.032 4.032 22 C 0.191 3.809 23 N -0.275 5.275 24 N -0.288 5.288 25 C 0.354 3.646 26 O -0.433 6.433 27 N -0.480 5.480 28 C 0.111 3.889 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.001 0.999 32 H 0.251 0.749 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.406 0.594 47 H 0.103 0.897 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 -19.727 8.362 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.323 5.323 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.547 5.547 7 Si 0.729 3.271 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.203 1.203 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.006 4.006 14 N -0.344 5.344 15 C -0.075 4.075 16 C 0.304 3.696 17 O -0.391 6.391 18 C -0.143 4.143 19 H 0.125 0.875 20 C -0.147 4.147 21 C -0.072 4.072 22 C -0.076 4.076 23 N -0.117 5.117 24 N -0.139 5.139 25 C 0.050 3.950 26 O -0.232 6.232 27 N -0.184 5.184 28 C -0.012 4.012 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.264 0.736 47 H 0.121 0.879 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.300 -18.927 9.552 22.117 hybrid contribution -1.042 1.001 -1.311 1.951 sum 5.257 -17.926 8.242 20.419 Atomic orbital electron populations 1.20765 0.82842 0.95596 0.99287 1.44011 1.01753 1.00855 1.85637 1.19214 0.97685 0.84928 1.36640 0.91286 1.24918 0.98594 0.98313 0.97840 1.70110 1.23476 1.27022 1.34127 0.86315 0.78598 0.84307 0.77898 1.21536 1.21883 1.20346 1.20740 0.95787 0.88130 0.92596 1.22630 0.99297 0.95033 1.02201 1.21705 1.01455 0.97316 0.80159 1.47966 1.20102 1.51003 1.15337 1.22011 0.93691 0.94584 0.97204 1.20027 0.81471 0.81368 0.86773 1.90782 1.47839 1.33320 1.67182 1.21694 0.97707 1.02199 0.92662 0.87520 1.21592 0.93301 1.02653 0.97184 1.20338 0.94838 1.02297 0.89677 1.24699 0.87589 1.00357 0.94927 1.74027 1.14622 1.18884 1.04137 1.74867 0.98996 1.16289 1.23746 1.21848 0.89637 1.01587 0.81934 1.84969 1.10587 1.35718 1.91954 1.46633 1.14900 1.48404 1.08423 1.22116 0.99133 1.02692 0.77282 0.95377 0.94343 0.98073 0.93853 0.93712 0.94604 0.92904 0.91402 0.90905 0.90043 0.92255 0.91364 0.90275 0.88473 0.89729 0.87303 0.88163 0.73623 0.87931 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 9.07 59.85 0.54 4.40 16 2 N -0.60 -14.98 2.92 -181.12 -0.53 -15.51 16 3 C -0.26 -7.09 9.62 -15.06 -0.14 -7.24 16 4 H 0.07 1.91 7.90 -52.49 -0.41 1.50 16 5 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 6 N -0.90 -26.45 11.09 55.49 0.62 -25.84 16 7 Si 0.90 22.17 29.60 -169.99 -5.03 17.14 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.16 3.06 5.71 -4.04 -0.02 3.04 16 12 C -0.15 -2.64 5.86 -26.73 -0.16 -2.79 16 13 C 0.12 1.50 5.40 -4.04 -0.02 1.48 16 14 N -0.61 -6.60 2.87 -181.57 -0.52 -7.13 16 15 C 0.07 0.46 10.03 59.85 0.60 1.06 16 16 C 0.52 6.10 6.87 -10.98 -0.08 6.03 16 17 O -0.52 -8.39 15.69 5.55 0.09 -8.30 16 18 C -0.12 -0.96 1.70 -91.53 -0.16 -1.12 16 19 H 0.11 0.60 7.58 -51.93 -0.39 0.21 16 20 C -0.11 -0.85 4.59 -26.41 -0.12 -0.97 16 21 C -0.03 -0.21 6.34 -27.58 -0.17 -0.39 16 22 C 0.19 1.98 7.78 -154.45 -1.20 0.77 16 23 N -0.28 -3.65 12.17 32.93 0.40 -3.25 16 24 N -0.29 -4.02 12.24 29.53 0.36 -3.66 16 25 C 0.35 4.06 9.30 -89.29 -0.83 3.23 16 26 O -0.43 -3.95 13.64 -18.31 -0.25 -4.20 16 27 N -0.48 -4.79 3.16 -115.38 -0.36 -5.15 16 28 C 0.11 0.94 6.02 -4.03 -0.02 0.91 16 29 H 0.03 0.73 7.39 -51.93 -0.38 0.35 16 30 H 0.04 0.99 7.42 -51.93 -0.39 0.61 16 31 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 34 H 0.04 0.62 7.86 -51.93 -0.41 0.21 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.08 1.15 7.49 -51.93 -0.39 0.76 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.35 4.00 -51.93 -0.21 0.14 16 41 H 0.08 0.56 8.11 -51.93 -0.42 0.13 16 42 H 0.10 0.71 8.02 -51.93 -0.42 0.29 16 43 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.41 1.36 9.06 45.56 0.41 1.77 16 47 H 0.10 1.07 8.12 -51.93 -0.42 0.65 16 48 H 0.11 0.68 5.58 -51.93 -0.29 0.39 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -37.33 387.54 -7.90 -45.23 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.63 Total: -3.56 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.87 Total: 8.38 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.04 Total: -60.53 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.16 Total: -12.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.33 -7.90 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673450497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.458 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds