Wall clock time and date at job start Tue Mar 31 2020 21:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99721 * 2 1 4 4 H 1.07999 * 119.99814 * 201.25080 * 3 2 1 5 5 C 1.38813 * 119.99934 * 21.26314 * 3 2 1 6 6 N 1.31617 * 120.00446 * 20.90291 * 5 3 2 7 7 Si 1.86801 * 119.99673 * 200.90869 * 5 3 2 8 8 H 1.48497 * 109.47325 * 94.98285 * 7 5 3 9 9 H 1.48500 * 109.47097 * 214.98159 * 7 5 3 10 10 H 1.48501 * 109.47041 * 334.98429 * 7 5 3 11 11 C 1.46499 * 120.00263 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46867 * 269.99872 * 11 2 1 13 13 C 1.53003 * 109.47221 * 179.97438 * 12 11 2 14 14 N 1.46495 * 109.47014 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00541 * 90.00066 * 14 13 12 16 16 C 1.34781 * 119.99704 * 269.99806 * 14 13 12 17 17 O 1.21286 * 119.99961 * 4.60760 * 16 14 13 18 18 C 1.50705 * 120.00069 * 184.61011 * 16 14 13 19 19 H 1.09004 * 109.44364 * 45.01259 * 18 16 14 20 20 C 1.53114 * 109.44427 * 164.94596 * 18 16 14 21 21 C 1.53496 * 109.36613 * 189.84293 * 20 18 16 22 22 C 1.50799 * 108.06008 * 311.06934 * 21 20 18 23 23 N 1.29600 * 128.73113 * 195.98582 * 22 21 20 24 24 N 1.28876 * 109.79300 * 179.80402 * 23 22 21 25 25 C 1.31375 * 109.92910 * 0.03318 * 24 23 22 26 26 O 1.35540 * 126.57737 * 180.02562 * 25 24 23 27 27 N 1.35430 * 106.84467 * 0.05562 * 25 24 23 28 28 C 1.46200 * 129.14346 * 179.83371 * 27 25 24 29 29 H 1.09002 * 109.47189 * 274.94647 * 1 2 3 30 30 H 1.09005 * 109.47268 * 34.94789 * 1 2 3 31 31 H 1.09003 * 109.47054 * 154.94848 * 1 2 3 32 32 H 0.96999 * 120.00421 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47491 * 150.00289 * 11 2 1 34 34 H 1.09000 * 109.47129 * 29.99340 * 11 2 1 35 35 H 1.09004 * 109.46913 * 59.99897 * 12 11 2 36 36 H 1.09000 * 109.47185 * 300.00053 * 12 11 2 37 37 H 1.08997 * 109.46701 * 300.00309 * 13 12 11 38 38 H 1.08998 * 109.46758 * 59.99569 * 13 12 11 39 39 H 1.09000 * 109.46990 * 84.28796 * 15 14 13 40 40 H 1.08994 * 109.47065 * 204.28806 * 15 14 13 41 41 H 1.09000 * 109.47066 * 324.29445 * 15 14 13 42 42 H 1.09005 * 109.48778 * 309.77517 * 20 18 16 43 43 H 1.09000 * 109.48635 * 69.83423 * 20 18 16 44 44 H 1.08996 * 109.71813 * 191.44193 * 21 20 18 45 45 H 1.08997 * 109.81513 * 70.74607 * 21 20 18 46 46 H 0.96698 * 113.99490 * 270.03517 * 26 25 24 47 47 H 1.08996 * 109.61089 * 77.27604 * 28 27 25 48 48 H 1.09004 * 109.73986 * 316.86479 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1745 1.2178 -0.3390 5 6 1.5264 2.3472 0.4360 6 7 0.4679 2.2734 1.2147 7 14 2.1899 4.0145 -0.0828 8 1 1.4522 4.4900 -1.2806 9 1 2.0109 4.9854 1.0265 10 1 3.6341 3.8936 -0.4067 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4418 13 6 3.2171 -3.0363 1.4413 14 7 3.4607 -3.4600 2.8223 15 6 2.4836 -4.3058 3.5123 16 6 4.5839 -3.0716 3.4581 17 8 5.3521 -2.3042 2.9178 18 6 4.8852 -3.5910 4.8404 19 1 4.7007 -4.6648 4.8727 20 6 6.3526 -3.3155 5.1797 21 6 6.7236 -4.0551 6.4725 22 6 5.6638 -3.7561 7.5028 23 7 5.7091 -3.9290 8.7864 24 7 4.5995 -3.5454 9.3178 25 6 3.7851 -3.1054 8.3856 26 8 2.5323 -2.6219 8.5700 27 7 4.4371 -3.2280 7.2050 28 6 3.9806 -2.8867 5.8587 29 1 -0.3634 0.0886 1.0238 30 1 -0.3634 0.8424 -0.5887 31 1 -0.3633 -0.9310 -0.4352 32 1 0.0321 3.0849 1.5191 33 1 3.1499 -1.1381 -0.5143 34 1 1.6084 -2.0282 -0.5146 35 1 1.5001 -1.8415 1.9555 36 1 3.0416 -0.9515 1.9559 37 1 2.6276 -3.7954 0.9272 38 1 4.1694 -2.9061 0.9273 39 1 2.6641 -5.3504 3.2587 40 1 2.5827 -4.1710 4.5893 41 1 1.4770 -4.0254 3.2021 42 1 6.9864 -3.6671 4.3655 43 1 6.4989 -2.2443 5.3181 44 1 7.6930 -3.7076 6.8298 45 1 6.7633 -5.1283 6.2859 46 1 1.8403 -3.2960 8.5266 47 1 4.0390 -1.8078 5.7151 48 1 2.9510 -3.2183 5.7240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673450497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:42 Heat of formation + Delta-G solvation = 10.852538 kcal Electronic energy + Delta-G solvation = -29909.687473 eV Core-core repulsion = 25808.685612 eV Total energy + Delta-G solvation = -4101.001860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.39050 -41.38525 -38.79861 -38.25697 -37.72806 -36.79319 -34.39343 -34.15209 -32.65545 -31.57672 -29.90107 -28.12387 -27.88710 -27.20762 -25.79888 -24.64355 -23.50078 -23.46830 -21.98922 -21.26750 -20.09116 -19.89268 -18.81700 -18.52776 -18.07054 -17.38450 -17.18402 -16.68302 -16.50768 -16.08285 -15.84807 -15.52762 -15.49242 -15.35319 -15.13937 -14.82661 -14.56133 -14.41017 -13.85673 -13.63971 -13.41556 -13.37159 -13.10972 -13.03899 -12.95053 -12.87639 -12.76436 -12.60890 -12.43429 -12.32240 -12.26617 -12.07665 -12.03374 -11.90780 -11.40538 -11.36746 -11.27594 -10.93661 -10.64921 -10.16506 -9.72249 -8.81175 -7.88681 -5.31121 0.49365 0.89363 1.41827 1.43074 1.45846 1.52154 1.57531 1.93144 2.48762 2.63696 3.04322 3.16744 3.23929 3.28539 3.40272 3.69680 3.80016 3.83542 3.91604 4.10879 4.19839 4.24093 4.33918 4.39044 4.49407 4.56085 4.58688 4.63193 4.70833 4.76325 4.78742 4.84692 4.89237 4.92629 4.93542 4.96527 5.10269 5.24573 5.29866 5.42109 5.48679 5.57212 5.63809 5.67723 6.29649 6.33343 6.38207 7.07060 7.12192 7.46921 7.86984 8.27719 9.14714 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.002701 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.229845 B =10362.350390 C =10942.159022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.619 5.619 3 C -0.263 4.263 4 H 0.063 0.937 5 C -0.051 4.051 6 N -0.931 5.931 7 Si 0.958 3.042 8 H -0.283 1.283 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.150 3.850 12 C -0.131 4.131 13 C 0.126 3.874 14 N -0.611 5.611 15 C 0.061 3.939 16 C 0.514 3.486 17 O -0.571 6.571 18 C -0.108 4.108 19 H 0.145 0.855 20 C -0.106 4.106 21 C -0.024 4.024 22 C 0.198 3.802 23 N -0.309 5.309 24 N -0.329 5.329 25 C 0.358 3.642 26 O -0.440 6.440 27 N -0.478 5.478 28 C 0.113 3.887 29 H 0.003 0.997 30 H 0.010 0.990 31 H 0.043 0.957 32 H 0.248 0.752 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.015 0.985 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.431 0.569 47 H 0.076 0.924 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 -22.470 7.761 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.342 5.342 3 C -0.393 4.393 4 H 0.081 0.919 5 C -0.247 4.247 6 N -0.578 5.578 7 Si 0.787 3.213 8 H -0.210 1.210 9 H -0.223 1.223 10 H -0.196 1.196 11 C 0.024 3.976 12 C -0.172 4.172 13 C 0.003 3.997 14 N -0.343 5.343 15 C -0.080 4.080 16 C 0.301 3.699 17 O -0.449 6.449 18 C -0.129 4.129 19 H 0.162 0.838 20 C -0.144 4.144 21 C -0.063 4.063 22 C -0.070 4.070 23 N -0.150 5.150 24 N -0.179 5.179 25 C 0.052 3.948 26 O -0.243 6.243 27 N -0.182 5.182 28 C -0.010 4.010 29 H 0.021 0.979 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.137 0.863 45 H 0.151 0.849 46 H 0.292 0.708 47 H 0.095 0.905 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.146 -21.739 8.963 24.304 hybrid contribution -1.034 1.812 -1.161 2.388 sum 5.112 -19.926 7.802 22.002 Atomic orbital electron populations 1.20558 0.82605 0.96500 0.97584 1.44278 1.02293 1.01876 1.85787 1.19450 0.97595 0.86548 1.35727 0.91930 1.25620 0.99345 1.01364 0.98333 1.70241 1.24788 1.27353 1.35406 0.85382 0.78305 0.80371 0.77277 1.21023 1.22275 1.19649 1.20953 0.95667 0.86924 0.94097 1.22299 0.98797 0.96263 0.99844 1.21456 1.00550 0.95720 0.81971 1.48043 1.20589 1.50898 1.14721 1.22314 0.92519 0.95354 0.97843 1.20649 0.81041 0.80385 0.87801 1.90763 1.49744 1.35709 1.68720 1.21647 0.97559 1.03917 0.89785 0.83765 1.21547 0.93527 1.01293 0.98068 1.20516 0.94009 1.04037 0.87716 1.25353 0.88005 0.98874 0.94775 1.73942 1.14905 1.20584 1.05572 1.74764 0.99876 1.18114 1.25146 1.21887 0.90166 1.00639 0.82065 1.84927 1.10427 1.37071 1.91909 1.46665 1.14771 1.48271 1.08443 1.22151 1.00663 1.01372 0.76767 0.97905 0.97107 0.93872 0.94337 0.94185 0.90975 0.93268 0.96557 0.87083 0.91461 0.89206 0.89696 0.90175 0.87669 0.92372 0.86285 0.84914 0.70758 0.90532 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.28 9.07 127.77 1.16 9.44 16 2 N -0.62 -30.93 2.92 -726.93 -2.12 -33.05 16 3 C -0.26 -14.84 9.62 84.03 0.81 -14.03 16 4 H 0.06 3.54 7.90 -2.91 -0.02 3.51 16 5 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 6 N -0.93 -55.88 11.09 21.65 0.24 -55.64 16 7 Si 0.96 46.38 29.60 68.60 2.03 48.41 16 8 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 9 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 C 0.15 5.73 5.71 86.38 0.49 6.22 16 12 C -0.13 -4.53 5.86 30.60 0.18 -4.35 16 13 C 0.13 3.00 5.40 86.38 0.47 3.47 16 14 N -0.61 -11.73 2.87 -846.76 -2.43 -14.16 16 15 C 0.06 0.57 10.03 127.77 1.28 1.85 16 16 C 0.51 11.47 6.87 87.66 0.60 12.07 16 17 O -0.57 -18.86 15.69 -3.05 -0.05 -18.91 16 18 C -0.11 -1.47 1.70 -11.39 -0.02 -1.49 16 19 H 0.14 0.94 7.58 -2.38 -0.02 0.92 16 20 C -0.11 -1.49 4.59 30.80 0.14 -1.35 16 21 C -0.02 -0.26 6.34 30.05 0.19 -0.07 16 22 C 0.20 3.80 7.78 137.84 1.07 4.87 16 23 N -0.31 -8.03 12.17 -49.73 -0.61 -8.64 16 24 N -0.33 -9.10 12.24 -173.86 -2.13 -11.23 16 25 C 0.36 7.90 9.30 179.88 1.67 9.57 16 26 O -0.44 -7.51 13.64 -88.45 -1.21 -8.72 16 27 N -0.48 -8.87 3.16 -630.21 -1.99 -10.86 16 28 C 0.11 1.73 6.02 86.55 0.52 2.26 16 29 H 0.00 0.14 7.39 -2.39 -0.02 0.12 16 30 H 0.01 0.54 7.42 -2.38 -0.02 0.52 16 31 H 0.04 1.67 7.84 -2.39 -0.02 1.65 16 32 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 33 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 34 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.07 1.83 7.49 -2.39 -0.02 1.81 16 39 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 0.50 4.00 -2.39 -0.01 0.49 16 41 H 0.08 0.80 8.11 -2.39 -0.02 0.78 16 42 H 0.10 1.36 8.02 -2.38 -0.02 1.34 16 43 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 44 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.43 2.07 9.06 -74.06 -0.67 1.40 16 47 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 48 H 0.13 1.31 5.58 -2.38 -0.01 1.30 16 Total: -1.00 -85.93 387.54 1.03 -84.90 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 0.31 Total: 1.96 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 8.98 Total: 25.94 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -9.04 Total: -133.59 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.25 Total: -27.63 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -85.93 1.03 -84.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673450497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.751 kcal (2) G-P(sol) polarization free energy of solvation -85.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds