Wall clock time and date at job start Tue Mar 31 2020 21:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 111.00068 * 2 1 4 4 C 1.52998 * 109.47398 * 66.04155 * 3 2 1 5 5 C 1.52998 * 109.47513 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47332 * 180.02562 * 5 4 3 7 7 C 1.46497 * 119.99984 * 269.99854 * 6 5 4 8 8 C 1.34769 * 119.99854 * 90.00238 * 6 5 4 9 9 O 1.21285 * 120.00559 * 359.97438 * 8 6 5 10 10 C 1.50699 * 120.00037 * 180.02562 * 8 6 5 11 11 C 1.50704 * 109.47511 * 179.97438 * 10 8 6 12 12 C 1.34664 * 126.58651 * 275.03761 * 11 10 8 13 13 N 1.34134 * 108.01786 * 179.74146 * 12 11 10 14 14 C 1.30496 * 109.25675 * 0.37372 * 13 12 11 15 15 N 1.35047 * 108.70161 * 359.62603 * 14 13 12 16 16 H 0.96997 * 126.40535 * 180.25138 * 15 14 13 17 17 C 1.46896 * 111.00349 * 236.03954 * 2 1 3 18 18 C 1.50698 * 109.47358 * 293.95946 * 17 2 1 19 19 O 1.21300 * 120.00100 * 359.97438 * 18 17 2 20 20 N 1.34774 * 120.00209 * 179.97438 * 18 17 2 21 21 C 1.37101 * 120.00079 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00119 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99621 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00721 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99687 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47478 * 59.99745 * 25 23 21 27 27 H 1.48504 * 109.47273 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47091 * 299.99555 * 25 23 21 29 29 H 1.08997 * 109.46624 * 60.00562 * 1 2 3 30 30 H 1.09000 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47357 * 300.00177 * 1 2 3 32 32 H 1.09000 * 109.46795 * 306.04232 * 3 2 1 33 33 H 1.08994 * 109.47164 * 186.04461 * 3 2 1 34 34 H 1.09009 * 109.46983 * 60.00012 * 4 3 2 35 35 H 1.09001 * 109.47620 * 300.00231 * 4 3 2 36 36 H 1.09000 * 109.46775 * 60.00019 * 5 4 3 37 37 H 1.09008 * 109.47039 * 300.00398 * 5 4 3 38 38 H 1.08997 * 109.47246 * 270.00596 * 7 6 5 39 39 H 1.09003 * 109.47044 * 29.99822 * 7 6 5 40 40 H 1.09004 * 109.47069 * 150.00157 * 7 6 5 41 41 H 1.08992 * 109.47512 * 59.99585 * 10 8 6 42 42 H 1.09004 * 109.47075 * 299.99537 * 10 8 6 43 43 H 1.07998 * 125.99171 * 359.92955 * 12 11 10 44 44 H 1.08002 * 125.65353 * 179.89694 * 14 13 12 45 45 H 1.09008 * 109.46951 * 53.95398 * 17 2 1 46 46 H 1.08993 * 109.47553 * 173.95529 * 17 2 1 47 47 H 0.97006 * 119.99520 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 7 1.8311 4.1428 2.5804 7 6 0.5743 4.8863 2.6971 8 6 2.6673 4.0630 3.6344 9 8 3.7077 3.4472 3.5379 10 6 2.3090 4.7380 4.9332 11 6 3.4021 4.4980 5.9425 12 6 3.5330 3.4235 6.7436 13 7 4.6367 3.5923 7.4870 14 6 5.1902 4.7342 7.1825 15 7 4.4531 5.3298 6.2204 16 1 4.6346 6.1868 5.8038 17 6 1.9956 -0.7661 -1.1374 18 6 1.6370 -2.2205 -0.9727 19 8 1.0054 -2.5833 -0.0028 20 7 2.0181 -3.1181 -1.9030 21 6 1.6924 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8888 23 6 2.0858 -5.3668 -2.7117 24 7 2.7697 -4.9737 -3.7627 25 14 1.6413 -7.1696 -2.5074 26 1 0.1642 -7.3125 -2.4557 27 1 2.1731 -7.9439 -3.6576 28 1 2.2330 -7.6855 -1.2468 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5612 1.9272 -0.8310 33 1 3.0797 1.3444 -0.1082 34 1 2.0658 1.5016 2.1492 35 1 0.5472 2.0846 1.4265 36 1 1.7445 4.0417 0.4870 37 1 3.2636 3.4594 1.2095 38 1 0.7391 5.9255 2.4127 39 1 -0.1724 4.4433 2.0380 40 1 0.2209 4.8432 3.7274 41 1 1.3716 4.3284 5.3091 42 1 2.1965 5.8094 4.7669 43 1 2.8678 2.5735 6.7791 44 1 6.0913 5.1344 7.6234 45 1 1.5612 -0.3874 -2.0628 46 1 3.0798 -0.6612 -1.1755 47 1 2.5236 -2.8279 -2.6784 48 1 3.0446 -5.6198 -4.4319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673474861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:30 Heat of formation + Delta-G solvation = -0.166258 kcal Electronic energy + Delta-G solvation = -28238.001791 eV Core-core repulsion = 24136.522120 eV Total energy + Delta-G solvation = -4101.479671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32383 -40.11506 -38.60721 -36.89908 -35.83312 -33.86573 -33.31086 -32.51879 -31.58930 -31.17553 -28.11676 -27.59332 -27.35134 -25.90477 -24.66506 -22.98750 -21.86453 -21.24396 -20.73513 -19.69721 -19.08246 -18.14070 -17.79257 -17.52710 -16.49537 -16.09984 -15.86441 -15.48556 -15.01515 -14.96119 -14.67853 -14.55526 -14.24438 -13.91855 -13.73233 -13.68766 -13.48484 -13.41679 -13.31212 -13.21467 -12.80420 -12.66516 -12.15615 -11.95629 -11.89463 -11.60787 -11.43609 -11.20127 -11.17427 -10.86568 -10.54257 -10.40711 -10.31669 -10.24140 -10.17443 -10.09303 -9.42567 -9.01784 -8.64857 -8.39108 -7.93055 -7.78804 -6.37469 -3.78131 1.67848 2.30236 2.61015 2.84961 2.99661 3.23367 3.28560 3.33260 3.95522 4.04484 4.15321 4.27973 4.30841 4.50030 4.54426 4.64028 4.83572 4.87853 4.93128 5.07922 5.14383 5.15661 5.21621 5.25586 5.29251 5.35720 5.36501 5.48444 5.63491 5.76051 5.76802 5.88927 5.97472 6.02292 6.07085 6.12083 6.31895 6.35646 6.47125 6.60265 6.98314 7.08061 7.33790 7.46673 7.59150 7.81117 7.86716 8.10888 8.66748 9.22511 9.59222 10.11542 10.80297 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.001788 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.779290 B =15658.136212 C =16646.883200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.129 4.129 5 C 0.117 3.883 6 N -0.617 5.617 7 C 0.075 3.925 8 C 0.509 3.491 9 O -0.519 6.519 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.003 4.003 13 N -0.493 5.493 14 C 0.187 3.813 15 N -0.564 5.564 16 H 0.417 0.583 17 C 0.046 3.954 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.012 0.988 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.168 0.832 44 H 0.208 0.792 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 29.016 12.644 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.242 5.242 3 C -0.070 4.070 4 C -0.168 4.168 5 C -0.006 4.006 6 N -0.352 5.352 7 C -0.068 4.068 8 C 0.296 3.704 9 O -0.394 6.394 10 C -0.103 4.103 11 C -0.128 4.128 12 C -0.151 4.151 13 N -0.212 5.212 14 C -0.097 4.097 15 N -0.167 5.167 16 H 0.254 0.746 17 C -0.085 4.085 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.030 0.970 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.117 0.883 43 H 0.185 0.815 44 H 0.224 0.776 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.222 27.479 14.115 30.916 hybrid contribution -0.379 0.711 -2.146 2.292 sum -1.601 28.190 11.969 30.667 Atomic orbital electron populations 1.22554 0.86959 1.04355 0.98686 1.61515 1.08569 1.11404 1.42755 1.22026 1.00306 0.88867 0.95804 1.21912 1.01227 0.94556 0.99095 1.21479 1.01923 0.92958 0.84221 1.47854 1.21093 1.53419 1.12802 1.21852 0.85745 0.96050 1.03168 1.20534 0.83929 0.81028 0.84900 1.90786 1.24447 1.41282 1.82864 1.20057 0.97178 1.02300 0.90781 1.20436 0.93967 0.95083 1.03278 1.22077 0.97642 0.98386 0.97028 1.70298 1.08777 1.15825 1.26254 1.24957 0.99633 0.91792 0.93309 1.43180 1.21425 1.19727 1.32413 0.74588 1.21860 1.00695 0.94156 0.91805 1.19754 0.85391 0.86688 0.85179 1.90483 1.43905 1.80159 1.31577 1.41864 1.49513 1.07347 1.21473 1.19649 1.32952 0.82323 1.07842 0.87980 1.25256 0.96868 1.00547 0.95335 1.69604 1.38130 1.35811 1.10904 0.85918 0.78846 0.81742 0.77702 1.19968 1.21020 1.19878 0.96959 0.88697 0.92210 0.95290 0.90797 0.90396 0.91749 0.90622 0.89732 0.92501 0.90565 0.90870 0.86415 0.88337 0.81456 0.77584 0.93571 0.89419 0.77511 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.96 60.07 0.54 0.91 16 2 N -0.52 -9.02 4.50 -244.38 -1.10 -10.11 16 3 C 0.06 0.77 4.96 -3.83 -0.02 0.75 16 4 C -0.13 -1.49 5.46 -26.73 -0.15 -1.63 16 5 C 0.12 1.06 5.41 -4.04 -0.02 1.04 16 6 N -0.62 -4.82 2.87 -181.57 -0.52 -5.35 16 7 C 0.08 0.29 10.24 59.85 0.61 0.90 16 8 C 0.51 4.94 7.67 -10.99 -0.08 4.86 16 9 O -0.52 -7.64 15.61 5.55 0.09 -7.55 16 10 C -0.06 -0.37 4.81 -29.03 -0.14 -0.51 16 11 C -0.01 -0.11 5.73 -81.60 -0.47 -0.58 16 12 C 0.00 -0.03 11.79 -17.81 -0.21 -0.24 16 13 N -0.49 -6.06 11.25 -14.66 -0.16 -6.23 16 14 C 0.19 1.58 13.04 -90.37 -1.18 0.40 16 15 N -0.56 -3.96 6.15 -10.30 -0.06 -4.03 16 16 H 0.42 1.48 8.96 -40.82 -0.37 1.12 16 17 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 18 C 0.44 10.81 7.47 -10.99 -0.08 10.72 16 19 O -0.58 -15.94 13.91 5.54 0.08 -15.86 16 20 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 1.92 5.82 -51.93 -0.30 1.62 16 31 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 32 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 34 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 36 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 37 H 0.08 0.91 7.42 -51.92 -0.39 0.53 16 38 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 40 H 0.07 0.16 6.44 -51.93 -0.33 -0.18 16 41 H 0.12 0.48 7.40 -51.93 -0.38 0.10 16 42 H 0.10 0.30 8.11 -51.93 -0.42 -0.12 16 43 H 0.17 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.21 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.05 0.78 8.12 -51.92 -0.42 0.36 16 46 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 47 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -38.62 399.02 -8.82 -47.44 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.32 Total: 8.88 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.47 Total: 9.33 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -1.18 Total: -64.65 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.16 Total: -23.41 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.62 -8.82 -47.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673474861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.269 kcal (2) G-P(sol) polarization free energy of solvation -38.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds