Wall clock time and date at job start Tue Mar 31 2020 21:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 111.00068 * 2 1 4 4 C 1.52998 * 109.47398 * 66.04155 * 3 2 1 5 5 C 1.52998 * 109.47513 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47332 * 180.02562 * 5 4 3 7 7 C 1.46497 * 119.99984 * 269.99854 * 6 5 4 8 8 C 1.34769 * 119.99854 * 90.00238 * 6 5 4 9 9 O 1.21285 * 120.00559 * 359.97438 * 8 6 5 10 10 C 1.50699 * 120.00037 * 180.02562 * 8 6 5 11 11 C 1.50704 * 109.47511 * 179.97438 * 10 8 6 12 12 C 1.34664 * 126.58651 * 275.03761 * 11 10 8 13 13 N 1.34134 * 108.01786 * 179.74146 * 12 11 10 14 14 C 1.30496 * 109.25675 * 0.37372 * 13 12 11 15 15 N 1.35047 * 108.70161 * 359.62603 * 14 13 12 16 16 H 0.96997 * 126.40535 * 180.25138 * 15 14 13 17 17 C 1.46896 * 111.00349 * 236.03954 * 2 1 3 18 18 C 1.50698 * 109.47358 * 293.95946 * 17 2 1 19 19 O 1.21300 * 120.00100 * 359.97438 * 18 17 2 20 20 N 1.34774 * 120.00209 * 179.97438 * 18 17 2 21 21 C 1.37101 * 120.00079 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00119 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99621 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00721 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99687 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47478 * 59.99745 * 25 23 21 27 27 H 1.48504 * 109.47273 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47091 * 299.99555 * 25 23 21 29 29 H 1.08997 * 109.46624 * 60.00562 * 1 2 3 30 30 H 1.09000 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47357 * 300.00177 * 1 2 3 32 32 H 1.09000 * 109.46795 * 306.04232 * 3 2 1 33 33 H 1.08994 * 109.47164 * 186.04461 * 3 2 1 34 34 H 1.09009 * 109.46983 * 60.00012 * 4 3 2 35 35 H 1.09001 * 109.47620 * 300.00231 * 4 3 2 36 36 H 1.09000 * 109.46775 * 60.00019 * 5 4 3 37 37 H 1.09008 * 109.47039 * 300.00398 * 5 4 3 38 38 H 1.08997 * 109.47246 * 270.00596 * 7 6 5 39 39 H 1.09003 * 109.47044 * 29.99822 * 7 6 5 40 40 H 1.09004 * 109.47069 * 150.00157 * 7 6 5 41 41 H 1.08992 * 109.47512 * 59.99585 * 10 8 6 42 42 H 1.09004 * 109.47075 * 299.99537 * 10 8 6 43 43 H 1.07998 * 125.99171 * 359.92955 * 12 11 10 44 44 H 1.08002 * 125.65353 * 179.89694 * 14 13 12 45 45 H 1.09008 * 109.46951 * 53.95398 * 17 2 1 46 46 H 1.08993 * 109.47553 * 173.95529 * 17 2 1 47 47 H 0.97006 * 119.99520 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 7 1.8311 4.1428 2.5804 7 6 0.5743 4.8863 2.6971 8 6 2.6673 4.0630 3.6344 9 8 3.7077 3.4472 3.5379 10 6 2.3090 4.7380 4.9332 11 6 3.4021 4.4980 5.9425 12 6 3.5330 3.4235 6.7436 13 7 4.6367 3.5923 7.4870 14 6 5.1902 4.7342 7.1825 15 7 4.4531 5.3298 6.2204 16 1 4.6346 6.1868 5.8038 17 6 1.9956 -0.7661 -1.1374 18 6 1.6370 -2.2205 -0.9727 19 8 1.0054 -2.5833 -0.0028 20 7 2.0181 -3.1181 -1.9030 21 6 1.6924 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8888 23 6 2.0858 -5.3668 -2.7117 24 7 2.7697 -4.9737 -3.7627 25 14 1.6413 -7.1696 -2.5074 26 1 0.1642 -7.3125 -2.4557 27 1 2.1731 -7.9439 -3.6576 28 1 2.2330 -7.6855 -1.2468 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5612 1.9272 -0.8310 33 1 3.0797 1.3444 -0.1082 34 1 2.0658 1.5016 2.1492 35 1 0.5472 2.0846 1.4265 36 1 1.7445 4.0417 0.4870 37 1 3.2636 3.4594 1.2095 38 1 0.7391 5.9255 2.4127 39 1 -0.1724 4.4433 2.0380 40 1 0.2209 4.8432 3.7274 41 1 1.3716 4.3284 5.3091 42 1 2.1965 5.8094 4.7669 43 1 2.8678 2.5735 6.7791 44 1 6.0913 5.1344 7.6234 45 1 1.5612 -0.3874 -2.0628 46 1 3.0798 -0.6612 -1.1755 47 1 2.5236 -2.8279 -2.6784 48 1 3.0446 -5.6198 -4.4319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673474861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:29 Heat of formation + Delta-G solvation = -29.821650 kcal Electronic energy + Delta-G solvation = -28239.287746 eV Core-core repulsion = 24136.522120 eV Total energy + Delta-G solvation = -4102.765625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.97814 -40.83933 -40.36035 -38.24857 -36.71693 -35.87854 -34.04538 -33.35220 -33.22344 -32.35199 -29.48549 -28.49314 -27.91538 -27.09012 -26.23310 -24.16036 -22.53658 -22.03801 -21.75699 -20.99959 -20.31759 -19.85013 -18.74517 -18.17987 -17.83202 -17.04323 -16.83161 -16.62695 -16.54546 -16.23099 -15.86058 -15.67059 -15.39505 -15.17695 -15.02730 -14.70442 -14.51147 -14.31390 -14.03027 -13.96033 -13.74420 -13.48586 -13.28089 -13.21995 -13.04017 -12.82333 -12.75924 -12.69560 -12.50175 -12.41098 -12.32369 -12.12380 -11.52214 -11.45366 -11.05568 -10.96924 -10.83842 -10.29241 -10.00513 -9.64789 -9.33581 -9.16977 -8.46512 -5.95327 1.03230 1.39211 1.40724 1.51862 1.62334 2.01941 2.05189 2.25090 2.28329 2.35120 2.81473 3.19983 3.42548 3.59597 3.77385 3.96311 4.01380 4.10128 4.14118 4.17445 4.32754 4.39549 4.40429 4.47276 4.53051 4.54092 4.57453 4.61700 4.63238 4.65923 4.71104 4.75556 4.85446 5.03718 5.11771 5.18002 5.24184 5.30938 5.40691 5.58808 5.76365 5.89401 6.08745 6.25848 6.40108 6.58927 6.60933 7.12815 7.13876 7.20381 7.56241 8.12594 8.70683 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.001788 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.779290 B =15658.136212 C =16646.883200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.117 4.117 5 C 0.122 3.878 6 N -0.614 5.614 7 C 0.066 3.934 8 C 0.503 3.497 9 O -0.582 6.582 10 C -0.054 4.054 11 C -0.005 4.005 12 C -0.047 4.047 13 N -0.544 5.544 14 C 0.188 3.812 15 N -0.553 5.553 16 H 0.435 0.565 17 C 0.058 3.942 18 C 0.440 3.560 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.160 0.840 44 H 0.243 0.757 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 31.893 11.850 34.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.271 5.271 3 C -0.067 4.067 4 C -0.156 4.156 5 C -0.002 4.002 6 N -0.346 5.346 7 C -0.075 4.075 8 C 0.292 3.708 9 O -0.461 6.461 10 C -0.094 4.094 11 C -0.122 4.122 12 C -0.194 4.194 13 N -0.264 5.264 14 C -0.096 4.096 15 N -0.157 5.157 16 H 0.276 0.724 17 C -0.073 4.073 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.177 0.823 44 H 0.259 0.741 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.109 30.428 13.290 33.271 hybrid contribution -0.128 -0.113 -1.881 1.888 sum -2.237 30.315 11.409 32.468 Atomic orbital electron populations 1.22414 0.86667 1.02097 1.00692 1.61459 1.09142 1.13978 1.42531 1.22086 1.00233 0.86804 0.97537 1.21784 1.01543 0.95506 0.96764 1.21370 1.00784 0.91986 0.86042 1.47968 1.22075 1.52783 1.11798 1.22185 0.83812 0.96703 1.04844 1.21163 0.83225 0.80271 0.86152 1.90765 1.27219 1.44139 1.83983 1.20179 0.96781 1.04481 0.87976 1.20749 0.94567 0.94306 1.02598 1.22219 0.98460 0.99713 0.99054 1.70210 1.09955 1.18162 1.28090 1.25641 1.00128 0.90842 0.92968 1.43162 1.20528 1.20187 1.31848 0.72444 1.21722 1.01837 0.90225 0.93483 1.20818 0.83735 0.88866 0.83866 1.90460 1.45245 1.81481 1.32972 1.41936 1.50069 1.07053 1.22155 1.19619 1.34546 0.84083 1.08050 0.90400 1.26049 0.96264 1.04380 0.94679 1.69665 1.38067 1.37253 1.11163 0.84984 0.78670 0.76681 0.77960 1.19580 1.19371 1.19914 0.94736 0.93024 0.90296 0.92427 0.90994 0.94386 0.90700 0.87375 0.91904 0.90205 0.89962 0.88883 0.84154 0.84280 0.82302 0.74075 0.91106 0.87810 0.77031 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.96 127.69 1.14 2.08 16 2 N -0.55 -18.58 4.50 -927.07 -4.17 -22.75 16 3 C 0.06 1.49 4.96 86.30 0.43 1.92 16 4 C -0.12 -2.55 5.46 30.59 0.17 -2.38 16 5 C 0.12 1.97 5.41 86.38 0.47 2.43 16 6 N -0.61 -8.11 2.87 -846.76 -2.43 -10.54 16 7 C 0.07 0.23 10.24 127.77 1.31 1.54 16 8 C 0.50 9.15 7.67 87.66 0.67 9.83 16 9 O -0.58 -17.54 15.61 -3.04 -0.05 -17.59 16 10 C -0.05 -0.52 4.81 29.10 0.14 -0.38 16 11 C -0.01 -0.09 5.73 40.95 0.23 0.15 16 12 C -0.05 -1.13 11.79 83.52 0.98 -0.15 16 13 N -0.54 -13.90 11.25 -200.31 -2.25 -16.16 16 14 C 0.19 3.05 13.04 180.26 2.35 5.41 16 15 N -0.55 -6.97 6.15 -186.49 -1.15 -8.12 16 16 H 0.43 2.06 8.96 -92.71 -0.83 1.22 16 17 C 0.06 2.14 5.45 85.56 0.47 2.60 16 18 C 0.44 21.87 7.47 87.66 0.66 22.52 16 19 O -0.62 -35.33 13.91 -3.09 -0.04 -35.38 16 20 N -0.57 -30.53 5.29 -306.99 -1.62 -32.15 16 21 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 25 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 2.13 5.82 -2.39 -0.01 2.11 16 31 H 0.08 2.17 6.47 -2.39 -0.02 2.15 16 32 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.07 1.78 7.93 -2.39 -0.02 1.76 16 34 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.07 1.45 6.55 -2.39 -0.02 1.44 16 36 H 0.11 1.07 8.07 -2.39 -0.02 1.05 16 37 H 0.06 1.32 7.42 -2.38 -0.02 1.30 16 38 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.08 0.25 8.07 -2.39 -0.02 0.23 16 40 H 0.09 -0.01 6.44 -2.39 -0.02 -0.03 16 41 H 0.14 0.73 7.40 -2.39 -0.02 0.72 16 42 H 0.14 0.21 8.11 -2.38 -0.02 0.19 16 43 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.24 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.07 2.25 8.12 -2.38 -0.02 2.23 16 46 H 0.10 3.45 7.93 -2.39 -0.02 3.43 16 47 H 0.40 19.92 7.90 -92.70 -0.73 19.19 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -89.89 399.02 0.32 -89.57 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.57 Total: 30.90 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 10.30 Total: 26.60 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -11.35 Total: -140.13 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.09 Total: -52.97 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -89.89 0.32 -89.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673474861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.746 kcal (2) G-P(sol) polarization free energy of solvation -89.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds