Wall clock time and date at job start Tue Mar 31 2020 21:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99815 * 2 1 4 4 C 1.53001 * 109.47427 * 89.99721 * 3 2 1 5 5 H 1.09005 * 109.46884 * 305.00053 * 4 3 2 6 6 O 1.42904 * 109.47098 * 64.99384 * 4 3 2 7 7 C 1.52998 * 109.47531 * 184.99559 * 4 3 2 8 8 N 1.46497 * 109.47439 * 179.97438 * 7 4 3 9 9 C 1.36932 * 120.00166 * 179.97438 * 8 7 4 10 10 H 1.08000 * 119.99911 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00046 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47099 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47152 * 300.00142 * 13 11 9 16 16 H 1.48504 * 109.47100 * 60.00264 * 13 11 9 17 17 C 1.34779 * 119.99901 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99558 * 184.45831 * 17 2 1 19 19 C 1.50698 * 120.00135 * 4.46282 * 17 2 1 20 20 H 1.09003 * 107.88041 * 43.89783 * 19 17 2 21 21 C 1.50955 * 108.02830 * 287.34972 * 19 17 2 22 22 C 1.53672 * 110.96338 * 165.70530 * 21 19 17 23 23 C 1.51883 * 106.90080 * 79.09303 * 22 21 19 24 24 N 1.29897 * 127.80870 * 114.87900 * 23 22 21 25 25 N 1.29035 * 109.22025 * 180.26912 * 24 23 22 26 26 C 1.30975 * 109.70800 * 359.92608 * 25 24 23 27 27 N 1.34596 * 124.57193 * 294.92815 * 23 22 21 28 28 C 1.47506 * 125.03318 * 359.46320 * 27 23 22 29 29 C 1.50861 * 108.02762 * 160.44834 * 19 17 2 30 30 H 1.09003 * 109.46568 * 92.86751 * 1 2 3 31 31 H 1.08995 * 109.47502 * 212.86828 * 1 2 3 32 32 H 1.09003 * 109.47343 * 332.87794 * 1 2 3 33 33 H 1.08998 * 109.47350 * 329.99066 * 3 2 1 34 34 H 1.09008 * 109.46835 * 209.99455 * 3 2 1 35 35 H 0.96702 * 113.99894 * 60.00495 * 6 4 3 36 36 H 1.09010 * 109.46541 * 59.99632 * 7 4 3 37 37 H 1.08994 * 109.47193 * 300.00579 * 7 4 3 38 38 H 0.96999 * 119.99542 * 0.02562 * 8 7 4 39 39 H 0.97000 * 119.99894 * 180.02562 * 12 11 9 40 40 H 1.09006 * 109.17421 * 286.08219 * 21 19 17 41 41 H 1.08997 * 109.17959 * 45.36288 * 21 19 17 42 42 H 1.08994 * 109.96436 * 198.44565 * 22 21 19 43 43 H 1.09001 * 109.96263 * 319.74905 * 22 21 19 44 44 H 1.07997 * 126.60939 * 179.88764 * 26 25 24 45 45 H 1.09005 * 109.92842 * 185.37304 * 28 27 23 46 46 H 1.08998 * 109.93159 * 306.57677 * 28 27 23 47 47 H 1.08996 * 109.14816 * 314.85001 * 29 19 17 48 48 H 1.08999 * 109.14738 * 74.00808 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 1.5060 1.7550 1.9815 6 8 3.3208 0.7726 2.0815 7 6 3.1060 3.0939 1.4443 8 7 3.3496 3.5171 2.8255 9 6 3.9315 4.7308 3.0772 10 1 4.2105 5.3763 2.2575 11 6 4.1628 5.1317 4.3859 12 7 3.8232 4.3449 5.3849 13 14 4.9559 6.7877 4.7292 14 1 5.0928 6.9764 6.1958 15 1 6.2990 6.8338 4.0972 16 1 4.1071 7.8691 4.1676 17 6 2.1389 -1.1672 0.0005 18 8 3.3489 -1.1687 0.0822 19 6 1.3888 -2.4704 -0.1004 20 1 0.6244 -2.3578 -0.8692 21 6 0.6938 -2.7127 1.2175 22 6 -0.3641 -3.8195 1.0858 23 6 0.3769 -5.1449 1.1197 24 7 0.3023 -6.0760 2.0223 25 7 1.0889 -7.0461 1.6978 26 6 1.6939 -6.7660 0.5705 27 7 1.2502 -5.5558 0.1816 28 6 1.6157 -4.7934 -1.0271 29 6 2.3578 -3.5326 -0.5575 30 1 -0.3632 -0.0514 -1.0264 31 1 -0.3634 -0.8631 0.5577 32 1 -0.3634 0.9147 0.4685 33 1 1.6085 2.0283 -0.5140 34 1 3.1500 1.1384 -0.5138 35 1 4.1836 0.6811 1.6544 36 1 2.4436 3.8093 0.9568 37 1 4.0523 3.0494 0.9053 38 1 3.0993 2.9372 3.5617 39 1 3.9845 4.6251 6.2994 40 1 1.4322 -3.0099 1.9623 41 1 0.2093 -1.7917 1.5415 42 1 -1.0661 -3.7641 1.9177 43 1 -0.8965 -3.7148 0.1405 44 1 2.4105 -7.3863 0.0527 45 1 2.2675 -5.3935 -1.6620 46 1 0.7165 -4.5132 -1.5757 47 1 2.9544 -3.1415 -1.3816 48 1 3.0188 -3.7931 0.2692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677098709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:56 Heat of formation + Delta-G solvation = 17.388038 kcal Electronic energy + Delta-G solvation = -29948.700447 eV Core-core repulsion = 25847.981988 eV Total energy + Delta-G solvation = -4100.718460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.58340 -40.65390 -37.87132 -36.88541 -35.54925 -34.56348 -33.95676 -32.48354 -31.31019 -30.37861 -29.43024 -27.56678 -27.00597 -25.25563 -24.74427 -22.94092 -22.73585 -21.57436 -21.10789 -20.61915 -19.36581 -18.11231 -17.31388 -17.14997 -16.68944 -16.32365 -15.98660 -15.57137 -15.32908 -15.22779 -14.94838 -14.63862 -14.38588 -14.30925 -13.75210 -13.62582 -13.26983 -13.03769 -12.94355 -12.93280 -12.71091 -12.47403 -12.35387 -12.16329 -11.99376 -11.69079 -11.52225 -11.30005 -11.26293 -10.93164 -10.80277 -10.67430 -10.59066 -10.50585 -10.18205 -9.92195 -9.76358 -9.61586 -9.42357 -8.88896 -8.57737 -6.91715 -5.73998 -3.03766 1.57530 2.14047 2.45884 2.65296 2.78283 3.44214 3.48257 3.50034 3.76432 3.90359 3.97147 4.08577 4.31084 4.36788 4.51126 4.56521 4.57847 4.73341 4.77016 4.79375 4.89267 4.91177 4.97798 5.00397 5.16842 5.24296 5.29237 5.32094 5.40890 5.49719 5.53010 5.62193 5.64571 5.67119 5.71269 5.78208 5.90345 5.97926 6.22332 6.36893 6.50475 6.53645 6.72335 7.20697 7.68315 8.03685 8.20749 8.44280 8.48182 9.55348 10.13504 10.49184 11.48237 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002228 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.282166 B =12561.556691 C =13049.336294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.609 5.609 3 C 0.085 3.915 4 C 0.087 3.913 5 H 0.094 0.906 6 O -0.545 6.545 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.068 0.932 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.291 1.291 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.519 3.481 18 O -0.527 6.527 19 C -0.104 4.104 20 H 0.091 0.909 21 C -0.122 4.122 22 C -0.029 4.029 23 C 0.177 3.823 24 N -0.293 5.293 25 N -0.304 5.304 26 C 0.149 3.851 27 N -0.470 5.470 28 C 0.107 3.893 29 C -0.119 4.119 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.374 0.626 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.389 0.611 39 H 0.256 0.744 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.218 0.782 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 -18.746 -20.314 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.342 5.342 3 C -0.038 4.038 4 C 0.026 3.974 5 H 0.112 0.888 6 O -0.350 6.350 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.376 4.376 10 H 0.086 0.914 11 C -0.209 4.209 12 N -0.577 5.577 13 Si 0.739 3.261 14 H -0.216 1.216 15 H -0.213 1.213 16 H -0.213 1.213 17 C 0.306 3.694 18 O -0.403 6.403 19 C -0.125 4.125 20 H 0.109 0.891 21 C -0.160 4.160 22 C -0.069 4.069 23 C -0.091 4.091 24 N -0.133 5.133 25 N -0.143 5.143 26 C -0.139 4.139 27 N -0.161 5.161 28 C -0.016 4.016 29 C -0.157 4.157 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.221 0.779 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.224 0.776 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.234 0.766 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.772 -19.408 -18.645 28.989 hybrid contribution 1.251 1.601 -1.194 2.356 sum -9.521 -17.808 -19.838 28.308 Atomic orbital electron populations 1.22139 0.79748 1.04355 1.01854 1.47709 1.06763 1.06011 1.73691 1.22290 0.98124 0.84565 0.98845 1.22468 0.94545 0.89114 0.91309 0.88821 1.86553 1.29147 1.62364 1.56915 1.21231 0.96945 0.92409 0.89750 1.42229 1.73834 1.20126 1.00776 1.19165 1.32398 0.94223 0.91773 0.91364 1.24768 1.01934 0.98588 0.95595 1.69672 1.52877 1.36911 0.98283 0.86261 0.79220 0.83703 0.76926 1.21637 1.21273 1.21279 1.20422 0.87929 0.84917 0.76113 1.90690 1.14136 1.86963 1.48468 1.20646 0.98544 0.93638 0.99667 0.89104 1.21526 0.98439 0.99593 0.96444 1.20556 0.96237 0.85272 1.04812 1.24842 0.95918 0.99720 0.88666 1.74259 1.17804 0.98805 1.22442 1.74547 1.08060 1.20507 1.11155 1.26348 1.03494 0.87276 0.96774 1.46334 1.33176 1.16220 1.20382 1.22508 1.01534 0.93024 0.84517 1.21502 0.97727 0.92817 1.03695 0.92551 0.90095 0.90384 0.89658 0.89632 0.77907 0.95906 0.96295 0.77648 0.93415 0.90137 0.88483 0.87273 0.89227 0.76564 0.87449 0.88449 0.88559 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 9.62 59.85 0.58 0.95 16 2 N -0.61 -6.01 2.86 -181.57 -0.52 -6.53 16 3 C 0.09 1.00 5.09 -4.04 -0.02 0.98 16 4 C 0.09 1.39 3.30 -26.73 -0.09 1.30 16 5 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -10.15 11.83 -47.75 -0.56 -10.71 16 7 C 0.13 2.47 5.92 -4.04 -0.02 2.44 16 8 N -0.72 -18.81 5.49 -59.91 -0.33 -19.14 16 9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.52 5.61 6.34 -10.99 -0.07 5.54 16 18 O -0.53 -7.74 14.24 -6.96 -0.10 -7.84 16 19 C -0.10 -0.70 1.31 -93.87 -0.12 -0.83 16 20 H 0.09 0.36 7.08 -51.93 -0.37 -0.01 16 21 C -0.12 -0.90 4.37 -27.41 -0.12 -1.02 16 22 C -0.03 -0.18 6.02 -26.95 -0.16 -0.34 16 23 C 0.18 1.70 7.03 -155.75 -1.09 0.60 16 24 N -0.29 -3.94 12.23 32.84 0.40 -3.53 16 25 N -0.30 -3.95 12.25 29.60 0.36 -3.59 16 26 C 0.15 1.28 12.83 -90.35 -1.16 0.12 16 27 N -0.47 -3.51 2.72 -114.23 -0.31 -3.82 16 28 C 0.11 0.40 6.53 -3.15 -0.02 0.38 16 29 C -0.12 -0.76 4.36 -27.47 -0.12 -0.88 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.38 4.26 -51.93 -0.22 0.16 16 32 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.09 1.08 7.49 -51.92 -0.39 0.69 16 35 H 0.37 6.60 8.64 45.56 0.39 6.99 16 36 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.39 10.94 7.54 -40.82 -0.31 10.63 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 41 H 0.10 0.68 5.22 -51.93 -0.27 0.40 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.30 7.89 -51.93 -0.41 -0.11 16 44 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.11 0.16 8.13 -51.93 -0.42 -0.26 16 46 H 0.10 0.19 7.87 -51.93 -0.41 -0.22 16 47 H 0.10 0.60 7.78 -51.93 -0.40 0.19 16 48 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -39.33 382.68 -8.82 -48.15 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.56 Total: 10.08 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.67 Total: 1.68 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.33 Total: -64.79 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.66 Total: -18.56 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.33 -8.82 -48.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677098709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.540 kcal (2) G-P(sol) polarization free energy of solvation -39.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds