Wall clock time and date at job start Tue Mar 31 2020 21:24:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46500 * 119.99815 * 2 1
4 4 C 1.53001 * 109.47427 * 89.99721 * 3 2 1
5 5 H 1.09005 * 109.46884 * 305.00053 * 4 3 2
6 6 O 1.42904 * 109.47098 * 64.99384 * 4 3 2
7 7 C 1.52998 * 109.47531 * 184.99559 * 4 3 2
8 8 N 1.46497 * 109.47439 * 179.97438 * 7 4 3
9 9 C 1.36932 * 120.00166 * 179.97438 * 8 7 4
10 10 H 1.08000 * 119.99911 * 0.02562 * 9 8 7
11 11 C 1.38813 * 120.00189 * 180.02562 * 9 8 7
12 12 N 1.31618 * 119.99988 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 120.00046 * 180.02562 * 11 9 8
14 14 H 1.48497 * 109.47099 * 180.02562 * 13 11 9
15 15 H 1.48503 * 109.47152 * 300.00142 * 13 11 9
16 16 H 1.48504 * 109.47100 * 60.00264 * 13 11 9
17 17 C 1.34779 * 119.99901 * 179.97438 * 2 1 3
18 18 O 1.21278 * 119.99558 * 184.45831 * 17 2 1
19 19 C 1.50698 * 120.00135 * 4.46282 * 17 2 1
20 20 H 1.09003 * 107.88041 * 43.89783 * 19 17 2
21 21 C 1.50955 * 108.02830 * 287.34972 * 19 17 2
22 22 C 1.53672 * 110.96338 * 165.70530 * 21 19 17
23 23 C 1.51883 * 106.90080 * 79.09303 * 22 21 19
24 24 N 1.29897 * 127.80870 * 114.87900 * 23 22 21
25 25 N 1.29035 * 109.22025 * 180.26912 * 24 23 22
26 26 C 1.30975 * 109.70800 * 359.92608 * 25 24 23
27 27 N 1.34596 * 124.57193 * 294.92815 * 23 22 21
28 28 C 1.47506 * 125.03318 * 359.46320 * 27 23 22
29 29 C 1.50861 * 108.02762 * 160.44834 * 19 17 2
30 30 H 1.09003 * 109.46568 * 92.86751 * 1 2 3
31 31 H 1.08995 * 109.47502 * 212.86828 * 1 2 3
32 32 H 1.09003 * 109.47343 * 332.87794 * 1 2 3
33 33 H 1.08998 * 109.47350 * 329.99066 * 3 2 1
34 34 H 1.09008 * 109.46835 * 209.99455 * 3 2 1
35 35 H 0.96702 * 113.99894 * 60.00495 * 6 4 3
36 36 H 1.09010 * 109.46541 * 59.99632 * 7 4 3
37 37 H 1.08994 * 109.47193 * 300.00579 * 7 4 3
38 38 H 0.96999 * 119.99542 * 0.02562 * 8 7 4
39 39 H 0.97000 * 119.99894 * 180.02562 * 12 11 9
40 40 H 1.09006 * 109.17421 * 286.08219 * 21 19 17
41 41 H 1.08997 * 109.17959 * 45.36288 * 21 19 17
42 42 H 1.08994 * 109.96436 * 198.44565 * 22 21 19
43 43 H 1.09001 * 109.96263 * 319.74905 * 22 21 19
44 44 H 1.07997 * 126.60939 * 179.88764 * 26 25 24
45 45 H 1.09005 * 109.92842 * 185.37304 * 28 27 23
46 46 H 1.08998 * 109.93159 * 306.57677 * 28 27 23
47 47 H 1.08996 * 109.14816 * 314.85001 * 29 19 17
48 48 H 1.08999 * 109.14738 * 74.00808 * 29 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4524 1.7105 1.4425
5 1 1.5060 1.7550 1.9815
6 8 3.3208 0.7726 2.0815
7 6 3.1060 3.0939 1.4443
8 7 3.3496 3.5171 2.8255
9 6 3.9315 4.7308 3.0772
10 1 4.2105 5.3763 2.2575
11 6 4.1628 5.1317 4.3859
12 7 3.8232 4.3449 5.3849
13 14 4.9559 6.7877 4.7292
14 1 5.0928 6.9764 6.1958
15 1 6.2990 6.8338 4.0972
16 1 4.1071 7.8691 4.1676
17 6 2.1389 -1.1672 0.0005
18 8 3.3489 -1.1687 0.0822
19 6 1.3888 -2.4704 -0.1004
20 1 0.6244 -2.3578 -0.8692
21 6 0.6938 -2.7127 1.2175
22 6 -0.3641 -3.8195 1.0858
23 6 0.3769 -5.1449 1.1197
24 7 0.3023 -6.0760 2.0223
25 7 1.0889 -7.0461 1.6978
26 6 1.6939 -6.7660 0.5705
27 7 1.2502 -5.5558 0.1816
28 6 1.6157 -4.7934 -1.0271
29 6 2.3578 -3.5326 -0.5575
30 1 -0.3632 -0.0514 -1.0264
31 1 -0.3634 -0.8631 0.5577
32 1 -0.3634 0.9147 0.4685
33 1 1.6085 2.0283 -0.5140
34 1 3.1500 1.1384 -0.5138
35 1 4.1836 0.6811 1.6544
36 1 2.4436 3.8093 0.9568
37 1 4.0523 3.0494 0.9053
38 1 3.0993 2.9372 3.5617
39 1 3.9845 4.6251 6.2994
40 1 1.4322 -3.0099 1.9623
41 1 0.2093 -1.7917 1.5415
42 1 -1.0661 -3.7641 1.9177
43 1 -0.8965 -3.7148 0.1405
44 1 2.4105 -7.3863 0.0527
45 1 2.2675 -5.3935 -1.6620
46 1 0.7165 -4.5132 -1.5757
47 1 2.9544 -3.1415 -1.3816
48 1 3.0188 -3.7931 0.2692
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001677098709.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:24:56
Heat of formation + Delta-G solvation = 17.388038 kcal
Electronic energy + Delta-G solvation = -29948.700447 eV
Core-core repulsion = 25847.981988 eV
Total energy + Delta-G solvation = -4100.718460 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.58340 -40.65390 -37.87132 -36.88541 -35.54925 -34.56348 -33.95676 -32.48354
-31.31019 -30.37861 -29.43024 -27.56678 -27.00597 -25.25563 -24.74427 -22.94092
-22.73585 -21.57436 -21.10789 -20.61915 -19.36581 -18.11231 -17.31388 -17.14997
-16.68944 -16.32365 -15.98660 -15.57137 -15.32908 -15.22779 -14.94838 -14.63862
-14.38588 -14.30925 -13.75210 -13.62582 -13.26983 -13.03769 -12.94355 -12.93280
-12.71091 -12.47403 -12.35387 -12.16329 -11.99376 -11.69079 -11.52225 -11.30005
-11.26293 -10.93164 -10.80277 -10.67430 -10.59066 -10.50585 -10.18205 -9.92195
-9.76358 -9.61586 -9.42357 -8.88896 -8.57737 -6.91715 -5.73998 -3.03766
1.57530 2.14047 2.45884 2.65296 2.78283 3.44214 3.48257 3.50034
3.76432 3.90359 3.97147 4.08577 4.31084 4.36788 4.51126 4.56521
4.57847 4.73341 4.77016 4.79375 4.89267 4.91177 4.97798 5.00397
5.16842 5.24296 5.29237 5.32094 5.40890 5.49719 5.53010 5.62193
5.64571 5.67119 5.71269 5.78208 5.90345 5.97926 6.22332 6.36893
6.50475 6.53645 6.72335 7.20697 7.68315 8.03685 8.20749 8.44280
8.48182 9.55348 10.13504 10.49184 11.48237
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.021059 B = 0.002228 C = 0.002145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.282166 B =12561.556691 C =13049.336294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.609 5.609
3 C 0.085 3.915
4 C 0.087 3.913
5 H 0.094 0.906
6 O -0.545 6.545
7 C 0.126 3.874
8 N -0.725 5.725
9 C -0.244 4.244
10 H 0.068 0.932
11 C -0.012 4.012
12 N -0.929 5.929
13 Si 0.908 3.092
14 H -0.291 1.291
15 H -0.286 1.286
16 H -0.286 1.286
17 C 0.519 3.481
18 O -0.527 6.527
19 C -0.104 4.104
20 H 0.091 0.909
21 C -0.122 4.122
22 C -0.029 4.029
23 C 0.177 3.823
24 N -0.293 5.293
25 N -0.304 5.304
26 C 0.149 3.851
27 N -0.470 5.470
28 C 0.107 3.893
29 C -0.119 4.119
30 H 0.056 0.944
31 H 0.081 0.919
32 H 0.077 0.923
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.374 0.626
36 H 0.023 0.977
37 H 0.019 0.981
38 H 0.389 0.611
39 H 0.256 0.744
40 H 0.080 0.920
41 H 0.097 0.903
42 H 0.109 0.891
43 H 0.089 0.911
44 H 0.218 0.782
45 H 0.107 0.893
46 H 0.097 0.903
47 H 0.096 0.904
48 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.588 -18.746 -20.314 29.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 N -0.342 5.342
3 C -0.038 4.038
4 C 0.026 3.974
5 H 0.112 0.888
6 O -0.350 6.350
7 C -0.003 4.003
8 N -0.370 5.370
9 C -0.376 4.376
10 H 0.086 0.914
11 C -0.209 4.209
12 N -0.577 5.577
13 Si 0.739 3.261
14 H -0.216 1.216
15 H -0.213 1.213
16 H -0.213 1.213
17 C 0.306 3.694
18 O -0.403 6.403
19 C -0.125 4.125
20 H 0.109 0.891
21 C -0.160 4.160
22 C -0.069 4.069
23 C -0.091 4.091
24 N -0.133 5.133
25 N -0.143 5.143
26 C -0.139 4.139
27 N -0.161 5.161
28 C -0.016 4.016
29 C -0.157 4.157
30 H 0.074 0.926
31 H 0.099 0.901
32 H 0.096 0.904
33 H 0.103 0.897
34 H 0.104 0.896
35 H 0.221 0.779
36 H 0.041 0.959
37 H 0.037 0.963
38 H 0.224 0.776
39 H 0.066 0.934
40 H 0.099 0.901
41 H 0.115 0.885
42 H 0.127 0.873
43 H 0.108 0.892
44 H 0.234 0.766
45 H 0.126 0.874
46 H 0.116 0.884
47 H 0.114 0.886
48 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -10.772 -19.408 -18.645 28.989
hybrid contribution 1.251 1.601 -1.194 2.356
sum -9.521 -17.808 -19.838 28.308
Atomic orbital electron populations
1.22139 0.79748 1.04355 1.01854 1.47709 1.06763 1.06011 1.73691
1.22290 0.98124 0.84565 0.98845 1.22468 0.94545 0.89114 0.91309
0.88821 1.86553 1.29147 1.62364 1.56915 1.21231 0.96945 0.92409
0.89750 1.42229 1.73834 1.20126 1.00776 1.19165 1.32398 0.94223
0.91773 0.91364 1.24768 1.01934 0.98588 0.95595 1.69672 1.52877
1.36911 0.98283 0.86261 0.79220 0.83703 0.76926 1.21637 1.21273
1.21279 1.20422 0.87929 0.84917 0.76113 1.90690 1.14136 1.86963
1.48468 1.20646 0.98544 0.93638 0.99667 0.89104 1.21526 0.98439
0.99593 0.96444 1.20556 0.96237 0.85272 1.04812 1.24842 0.95918
0.99720 0.88666 1.74259 1.17804 0.98805 1.22442 1.74547 1.08060
1.20507 1.11155 1.26348 1.03494 0.87276 0.96774 1.46334 1.33176
1.16220 1.20382 1.22508 1.01534 0.93024 0.84517 1.21502 0.97727
0.92817 1.03695 0.92551 0.90095 0.90384 0.89658 0.89632 0.77907
0.95906 0.96295 0.77648 0.93415 0.90137 0.88483 0.87273 0.89227
0.76564 0.87449 0.88449 0.88559 0.89717
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.38 9.62 59.85 0.58 0.95 16
2 N -0.61 -6.01 2.86 -181.57 -0.52 -6.53 16
3 C 0.09 1.00 5.09 -4.04 -0.02 0.98 16
4 C 0.09 1.39 3.30 -26.73 -0.09 1.30 16
5 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16
6 O -0.55 -10.15 11.83 -47.75 -0.56 -10.71 16
7 C 0.13 2.47 5.92 -4.04 -0.02 2.44 16
8 N -0.72 -18.81 5.49 -59.91 -0.33 -19.14 16
9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16
10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16
12 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16
13 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16
14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16
15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
17 C 0.52 5.61 6.34 -10.99 -0.07 5.54 16
18 O -0.53 -7.74 14.24 -6.96 -0.10 -7.84 16
19 C -0.10 -0.70 1.31 -93.87 -0.12 -0.83 16
20 H 0.09 0.36 7.08 -51.93 -0.37 -0.01 16
21 C -0.12 -0.90 4.37 -27.41 -0.12 -1.02 16
22 C -0.03 -0.18 6.02 -26.95 -0.16 -0.34 16
23 C 0.18 1.70 7.03 -155.75 -1.09 0.60 16
24 N -0.29 -3.94 12.23 32.84 0.40 -3.53 16
25 N -0.30 -3.95 12.25 29.60 0.36 -3.59 16
26 C 0.15 1.28 12.83 -90.35 -1.16 0.12 16
27 N -0.47 -3.51 2.72 -114.23 -0.31 -3.82 16
28 C 0.11 0.40 6.53 -3.15 -0.02 0.38 16
29 C -0.12 -0.76 4.36 -27.47 -0.12 -0.88 16
30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
31 H 0.08 0.38 4.26 -51.93 -0.22 0.16 16
32 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16
33 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16
34 H 0.09 1.08 7.49 -51.92 -0.39 0.69 16
35 H 0.37 6.60 8.64 45.56 0.39 6.99 16
36 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16
37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.39 10.94 7.54 -40.82 -0.31 10.63 16
39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
40 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16
41 H 0.10 0.68 5.22 -51.93 -0.27 0.40 16
42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.09 0.30 7.89 -51.93 -0.41 -0.11 16
44 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16
45 H 0.11 0.16 8.13 -51.93 -0.42 -0.26 16
46 H 0.10 0.19 7.87 -51.93 -0.41 -0.22 16
47 H 0.10 0.60 7.78 -51.93 -0.40 0.19 16
48 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16
LS Contribution 382.68 15.07 5.77 5.77
Total: -1.00 -39.33 382.68 -8.82 -48.15
By element:
Atomic # 1 Polarization: 16.63 SS G_CDS: -6.56 Total: 10.08 kcal
Atomic # 6 Polarization: 4.35 SS G_CDS: -2.67 Total: 1.68 kcal
Atomic # 7 Polarization: -65.12 SS G_CDS: 0.33 Total: -64.79 kcal
Atomic # 8 Polarization: -17.89 SS G_CDS: -0.66 Total: -18.56 kcal
Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -39.33 -8.82 -48.15 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001677098709.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.540 kcal
(2) G-P(sol) polarization free energy of solvation -39.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds