Wall clock time and date at job start Tue Mar 31 2020 21:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99815 * 2 1 4 4 C 1.53001 * 109.47427 * 89.99721 * 3 2 1 5 5 H 1.09005 * 109.46884 * 305.00053 * 4 3 2 6 6 O 1.42904 * 109.47098 * 64.99384 * 4 3 2 7 7 C 1.52998 * 109.47531 * 184.99559 * 4 3 2 8 8 N 1.46497 * 109.47439 * 179.97438 * 7 4 3 9 9 C 1.36932 * 120.00166 * 179.97438 * 8 7 4 10 10 H 1.08000 * 119.99911 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00046 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47099 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47152 * 300.00142 * 13 11 9 16 16 H 1.48504 * 109.47100 * 60.00264 * 13 11 9 17 17 C 1.34779 * 119.99901 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99558 * 184.45831 * 17 2 1 19 19 C 1.50698 * 120.00135 * 4.46282 * 17 2 1 20 20 H 1.09003 * 107.88041 * 43.89783 * 19 17 2 21 21 C 1.50955 * 108.02830 * 287.34972 * 19 17 2 22 22 C 1.53672 * 110.96338 * 165.70530 * 21 19 17 23 23 C 1.51883 * 106.90080 * 79.09303 * 22 21 19 24 24 N 1.29897 * 127.80870 * 114.87900 * 23 22 21 25 25 N 1.29035 * 109.22025 * 180.26912 * 24 23 22 26 26 C 1.30975 * 109.70800 * 359.92608 * 25 24 23 27 27 N 1.34596 * 124.57193 * 294.92815 * 23 22 21 28 28 C 1.47506 * 125.03318 * 359.46320 * 27 23 22 29 29 C 1.50861 * 108.02762 * 160.44834 * 19 17 2 30 30 H 1.09003 * 109.46568 * 92.86751 * 1 2 3 31 31 H 1.08995 * 109.47502 * 212.86828 * 1 2 3 32 32 H 1.09003 * 109.47343 * 332.87794 * 1 2 3 33 33 H 1.08998 * 109.47350 * 329.99066 * 3 2 1 34 34 H 1.09008 * 109.46835 * 209.99455 * 3 2 1 35 35 H 0.96702 * 113.99894 * 60.00495 * 6 4 3 36 36 H 1.09010 * 109.46541 * 59.99632 * 7 4 3 37 37 H 1.08994 * 109.47193 * 300.00579 * 7 4 3 38 38 H 0.96999 * 119.99542 * 0.02562 * 8 7 4 39 39 H 0.97000 * 119.99894 * 180.02562 * 12 11 9 40 40 H 1.09006 * 109.17421 * 286.08219 * 21 19 17 41 41 H 1.08997 * 109.17959 * 45.36288 * 21 19 17 42 42 H 1.08994 * 109.96436 * 198.44565 * 22 21 19 43 43 H 1.09001 * 109.96263 * 319.74905 * 22 21 19 44 44 H 1.07997 * 126.60939 * 179.88764 * 26 25 24 45 45 H 1.09005 * 109.92842 * 185.37304 * 28 27 23 46 46 H 1.08998 * 109.93159 * 306.57677 * 28 27 23 47 47 H 1.08996 * 109.14816 * 314.85001 * 29 19 17 48 48 H 1.08999 * 109.14738 * 74.00808 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 1.5060 1.7550 1.9815 6 8 3.3208 0.7726 2.0815 7 6 3.1060 3.0939 1.4443 8 7 3.3496 3.5171 2.8255 9 6 3.9315 4.7308 3.0772 10 1 4.2105 5.3763 2.2575 11 6 4.1628 5.1317 4.3859 12 7 3.8232 4.3449 5.3849 13 14 4.9559 6.7877 4.7292 14 1 5.0928 6.9764 6.1958 15 1 6.2990 6.8338 4.0972 16 1 4.1071 7.8691 4.1676 17 6 2.1389 -1.1672 0.0005 18 8 3.3489 -1.1687 0.0822 19 6 1.3888 -2.4704 -0.1004 20 1 0.6244 -2.3578 -0.8692 21 6 0.6938 -2.7127 1.2175 22 6 -0.3641 -3.8195 1.0858 23 6 0.3769 -5.1449 1.1197 24 7 0.3023 -6.0760 2.0223 25 7 1.0889 -7.0461 1.6978 26 6 1.6939 -6.7660 0.5705 27 7 1.2502 -5.5558 0.1816 28 6 1.6157 -4.7934 -1.0271 29 6 2.3578 -3.5326 -0.5575 30 1 -0.3632 -0.0514 -1.0264 31 1 -0.3634 -0.8631 0.5577 32 1 -0.3634 0.9147 0.4685 33 1 1.6085 2.0283 -0.5140 34 1 3.1500 1.1384 -0.5138 35 1 4.1836 0.6811 1.6544 36 1 2.4436 3.8093 0.9568 37 1 4.0523 3.0494 0.9053 38 1 3.0993 2.9372 3.5617 39 1 3.9845 4.6251 6.2994 40 1 1.4322 -3.0099 1.9623 41 1 0.2093 -1.7917 1.5415 42 1 -1.0661 -3.7641 1.9177 43 1 -0.8965 -3.7148 0.1405 44 1 2.4105 -7.3863 0.0527 45 1 2.2675 -5.3935 -1.6620 46 1 0.7165 -4.5132 -1.5757 47 1 2.9544 -3.1415 -1.3816 48 1 3.0188 -3.7931 0.2692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677098709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:54 Heat of formation + Delta-G solvation = -11.653565 kcal Electronic energy + Delta-G solvation = -29949.959786 eV Core-core repulsion = 25847.981988 eV Total energy + Delta-G solvation = -4101.977798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.24275 -41.43846 -38.98876 -37.77001 -36.48425 -35.88084 -35.16178 -33.23739 -33.07409 -31.23664 -30.60245 -28.24179 -27.93996 -26.52188 -25.36073 -24.57679 -23.40450 -22.75893 -22.12017 -21.20143 -20.11358 -19.24549 -18.70871 -17.99760 -17.79284 -17.01642 -16.91348 -16.58652 -16.42176 -16.27095 -15.98648 -15.71611 -15.51637 -15.18908 -14.86730 -14.73375 -14.33337 -14.10419 -13.77056 -13.75033 -13.59492 -13.45875 -13.15124 -13.06111 -12.96323 -12.75665 -12.67099 -12.48125 -12.33523 -12.22743 -12.03548 -11.87539 -11.85944 -11.79009 -11.30747 -11.13140 -11.09488 -10.97818 -10.61685 -10.17246 -9.49063 -9.03474 -7.96335 -5.26650 0.96441 1.44757 1.48899 1.55160 1.65318 1.66459 1.91049 2.05124 2.54224 3.21200 3.31619 3.35860 3.49184 3.55877 3.63637 3.78816 3.85938 3.88031 4.02159 4.07367 4.18562 4.24758 4.26941 4.32186 4.40614 4.43354 4.46940 4.50805 4.57419 4.68972 4.72465 4.83864 4.85328 4.89825 4.90934 5.00772 5.07323 5.15673 5.21615 5.24403 5.31390 5.44149 5.54598 6.02123 6.24027 6.46040 6.80044 7.25779 7.30373 7.76858 8.07375 8.29632 9.26923 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002228 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.282166 B =12561.556691 C =13049.336294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.609 5.609 3 C 0.097 3.903 4 C 0.095 3.905 5 H 0.088 0.912 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.249 4.249 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.296 1.296 15 H -0.278 1.278 16 H -0.273 1.273 17 C 0.509 3.491 18 O -0.576 6.576 19 C -0.095 4.095 20 H 0.137 0.863 21 C -0.113 4.113 22 C -0.021 4.021 23 C 0.175 3.825 24 N -0.351 5.351 25 N -0.361 5.361 26 C 0.159 3.841 27 N -0.467 5.467 28 C 0.109 3.891 29 C -0.115 4.115 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.374 0.626 36 H 0.041 0.959 37 H 0.021 0.979 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.035 0.965 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.257 0.743 45 H 0.137 0.863 46 H 0.132 0.868 47 H 0.100 0.900 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -18.264 -23.980 32.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.340 5.340 3 C -0.027 4.027 4 C 0.034 3.966 5 H 0.106 0.894 6 O -0.372 6.372 7 C -0.005 4.005 8 N -0.385 5.385 9 C -0.381 4.381 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.622 5.622 13 Si 0.806 3.194 14 H -0.223 1.223 15 H -0.204 1.204 16 H -0.198 1.198 17 C 0.298 3.702 18 O -0.455 6.455 19 C -0.116 4.116 20 H 0.155 0.845 21 C -0.151 4.151 22 C -0.061 4.061 23 C -0.095 4.095 24 N -0.190 5.190 25 N -0.200 5.200 26 C -0.130 4.130 27 N -0.157 5.157 28 C -0.011 4.011 29 C -0.153 4.153 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.222 0.778 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.152 0.848 44 H 0.272 0.728 45 H 0.155 0.845 46 H 0.150 0.850 47 H 0.118 0.882 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.349 -18.918 -22.379 31.800 hybrid contribution 1.754 1.459 -0.124 2.285 sum -10.595 -17.460 -22.503 30.389 Atomic orbital electron populations 1.22453 0.77073 1.05068 1.04270 1.47836 1.08385 1.04954 1.72868 1.22024 0.98886 0.86435 0.95404 1.22449 0.93168 0.86845 0.94114 0.89425 1.86529 1.29594 1.62970 1.58075 1.21462 0.97559 0.94847 0.86616 1.42469 1.73771 1.19366 1.02865 1.19641 1.31225 0.95066 0.92132 0.90364 1.25672 1.03392 1.02536 0.95546 1.69854 1.54934 1.39018 0.98358 0.85148 0.78528 0.79450 0.76234 1.22273 1.20421 1.19847 1.21226 0.87681 0.86333 0.74993 1.90670 1.16456 1.87729 1.50596 1.20701 0.99141 0.91305 1.00479 0.84500 1.21416 0.97797 1.00216 0.95687 1.20717 0.95476 0.82678 1.07182 1.25392 0.95881 0.99966 0.88244 1.74123 1.19731 1.00358 1.24764 1.74411 1.09951 1.21889 1.13730 1.27076 1.02575 0.87794 0.95550 1.46551 1.32254 1.15943 1.20986 1.22849 1.03358 0.91617 0.83276 1.21435 0.97439 0.94041 1.02386 0.89220 0.88646 0.90510 0.86695 0.90580 0.77842 0.94114 0.96140 0.79490 0.94042 0.94628 0.87884 0.87314 0.84841 0.72771 0.84478 0.84991 0.88160 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 9.62 127.77 1.23 1.66 16 2 N -0.61 -10.59 2.86 -846.75 -2.42 -13.01 16 3 C 0.10 2.11 5.09 86.38 0.44 2.55 16 4 C 0.09 3.01 3.30 30.59 0.10 3.11 16 5 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 6 O -0.57 -21.80 11.83 -137.01 -1.62 -23.42 16 7 C 0.12 4.76 5.92 86.38 0.51 5.27 16 8 N -0.74 -39.01 5.49 -343.46 -1.89 -40.89 16 9 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 10 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 11 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 12 N -0.97 -61.87 13.06 21.65 0.28 -61.59 16 13 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 C 0.51 10.32 6.34 87.66 0.56 10.87 16 18 O -0.58 -17.15 14.24 8.95 0.13 -17.02 16 19 C -0.10 -1.04 1.31 -12.90 -0.02 -1.06 16 20 H 0.14 0.28 7.08 -2.39 -0.02 0.26 16 21 C -0.11 -1.51 4.37 30.16 0.13 -1.38 16 22 C -0.02 -0.21 6.02 30.45 0.18 -0.03 16 23 C 0.18 3.20 7.03 138.83 0.98 4.18 16 24 N -0.35 -9.72 12.23 -50.00 -0.61 -10.33 16 25 N -0.36 -9.68 12.25 -60.28 -0.74 -10.42 16 26 C 0.16 2.56 12.83 180.25 2.31 4.87 16 27 N -0.47 -6.06 2.72 -515.30 -1.40 -7.46 16 28 C 0.11 0.40 6.53 86.41 0.56 0.97 16 29 C -0.11 -1.23 4.36 30.12 0.13 -1.10 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.10 0.51 4.26 -2.39 -0.01 0.50 16 32 H 0.08 0.71 8.05 -2.39 -0.02 0.69 16 33 H 0.11 1.84 8.07 -2.39 -0.02 1.82 16 34 H 0.08 1.85 7.49 -2.38 -0.02 1.83 16 35 H 0.37 13.91 8.64 -74.06 -0.64 13.27 16 36 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.37 21.65 7.54 -92.71 -0.70 20.95 16 39 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.03 0.80 7.91 -2.38 -0.02 0.78 16 41 H 0.10 1.25 5.22 -2.39 -0.01 1.24 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.13 0.16 7.89 -2.39 -0.02 0.14 16 44 H 0.26 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.14 -0.23 8.13 -2.38 -0.02 -0.25 16 46 H 0.13 -0.32 7.87 -2.39 -0.02 -0.34 16 47 H 0.10 1.04 7.78 -2.39 -0.02 1.02 16 48 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 Total: -1.00 -92.64 382.68 1.84 -90.80 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.34 Total: 32.08 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 8.42 Total: 12.31 kcal Atomic # 7 Polarization: -136.94 SS G_CDS: -6.77 Total: -143.71 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.49 Total: -40.44 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -92.64 1.84 -90.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677098709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.144 kcal (2) G-P(sol) polarization free energy of solvation -92.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds