Wall clock time and date at job start Tue Mar 31 2020 21:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00006 * 2 1 4 4 C 1.53003 * 109.47370 * 269.99641 * 3 2 1 5 5 H 1.08995 * 109.46473 * 59.99854 * 4 3 2 6 6 O 1.42903 * 109.47058 * 300.00264 * 4 3 2 7 7 C 1.52999 * 109.47132 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.46718 * 185.00241 * 7 4 3 9 9 C 1.36938 * 120.00005 * 179.97438 * 8 7 4 10 10 H 1.07999 * 119.99974 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00209 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00074 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99849 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47397 * 90.00016 * 13 11 9 15 15 H 1.48506 * 109.46753 * 209.99758 * 13 11 9 16 16 H 1.48499 * 109.47148 * 329.99321 * 13 11 9 17 17 C 1.34780 * 120.00060 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00204 * 183.22218 * 17 2 1 19 19 C 1.50699 * 119.99721 * 3.22764 * 17 2 1 20 20 H 1.09003 * 107.87789 * 314.63593 * 19 17 2 21 21 C 1.50951 * 108.03100 * 71.18589 * 19 17 2 22 22 C 1.53678 * 110.95025 * 194.23824 * 21 19 17 23 23 C 1.51880 * 106.90091 * 280.92248 * 22 21 19 24 24 N 1.29899 * 127.79987 * 245.22025 * 23 22 21 25 25 N 1.29034 * 109.22652 * 179.74876 * 24 23 22 26 26 C 1.30971 * 109.70604 * 0.03566 * 25 24 23 27 27 N 1.34603 * 124.58828 * 65.12376 * 23 22 21 28 28 C 1.47504 * 125.01895 * 0.47125 * 27 23 22 29 29 C 1.50859 * 107.99917 * 198.10503 * 19 17 2 30 30 H 1.09002 * 109.47203 * 264.05738 * 1 2 3 31 31 H 1.09003 * 109.46572 * 24.05404 * 1 2 3 32 32 H 1.08992 * 109.47099 * 144.04952 * 1 2 3 33 33 H 1.08992 * 109.47619 * 30.00063 * 3 2 1 34 34 H 1.09009 * 109.47174 * 150.00043 * 3 2 1 35 35 H 0.96699 * 114.00194 * 300.00086 * 6 4 3 36 36 H 1.08997 * 109.46937 * 304.99723 * 7 4 3 37 37 H 1.08997 * 109.47159 * 65.00495 * 7 4 3 38 38 H 0.97000 * 120.00231 * 359.97438 * 8 7 4 39 39 H 0.96999 * 119.99949 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.18509 * 73.86040 * 21 19 17 41 41 H 1.09000 * 109.18258 * 314.61696 * 21 19 17 42 42 H 1.08998 * 109.96547 * 161.57749 * 22 21 19 43 43 H 1.08996 * 109.96670 * 40.27044 * 22 21 19 44 44 H 1.08002 * 126.60778 * 180.12922 * 26 25 24 45 45 H 1.09003 * 109.93307 * 174.67716 * 28 27 23 46 46 H 1.09000 * 110.00209 * 53.49387 * 28 27 23 47 47 H 1.09001 * 109.14237 * 285.99297 * 29 19 17 48 48 H 1.08998 * 109.15016 * 45.19038 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1161 7 6 3.2181 3.0351 -1.4424 8 7 3.3581 3.5182 -2.8184 9 6 4.0124 4.6950 -3.0676 10 1 4.4256 5.2668 -2.2499 11 6 4.1454 5.1526 -4.3714 12 7 4.7739 6.2839 -4.6109 13 14 3.4314 4.1632 -5.7859 14 1 2.0345 4.5987 -6.0392 15 1 4.2479 4.3844 -7.0065 16 1 3.4443 2.7199 -5.4366 17 6 2.1389 -1.1672 0.0005 18 8 3.3503 -1.1681 0.0596 19 6 1.3871 -2.4713 -0.0724 20 1 0.5535 -2.4166 0.6278 21 6 0.8197 -2.6063 -1.4647 22 6 -0.2411 -3.7169 -1.5204 23 6 0.5056 -5.0377 -1.5890 24 7 0.5214 -5.8936 -2.5660 25 7 1.2773 -6.8893 -2.2465 26 6 1.7716 -6.7018 -1.0482 27 7 1.2883 -5.5247 -0.6082 28 6 1.5357 -4.8611 0.6857 29 6 2.3129 -3.5695 0.3889 30 1 -0.3634 -0.1064 1.0222 31 1 -0.3632 0.9385 -0.4189 32 1 -0.3633 -0.8319 -0.6033 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1384 0.5139 35 1 4.0873 0.5459 -1.7126 36 1 2.6711 3.7708 -0.8530 37 1 4.2064 2.8836 -1.0083 38 1 2.9873 3.0044 -3.5529 39 1 4.8665 6.6038 -5.5220 40 1 1.6257 -2.8458 -2.1582 41 1 0.3642 -1.6608 -1.7590 42 1 -0.8622 -3.5940 -2.4076 43 1 -0.8602 -3.6854 -0.6240 44 1 2.4385 -7.3638 -0.5158 45 1 2.1277 -5.5114 1.3297 46 1 0.5885 -4.6219 1.1691 47 1 3.0497 -3.7665 -0.3898 48 1 2.8273 -3.2467 1.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677098710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:01 Heat of formation + Delta-G solvation = 18.162668 kcal Electronic energy + Delta-G solvation = -30127.865242 eV Core-core repulsion = 26027.180373 eV Total energy + Delta-G solvation = -4100.684869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.62228 -40.73792 -37.99919 -37.00048 -35.64042 -34.62372 -34.15875 -32.53673 -31.50583 -30.46773 -29.73378 -27.63622 -27.19755 -25.43707 -24.79017 -22.79112 -22.71015 -21.52275 -21.27430 -20.66026 -19.40105 -18.15582 -17.73356 -17.39402 -16.76481 -16.37448 -16.05100 -15.65190 -15.43401 -15.28735 -15.09148 -14.66272 -14.53013 -14.31370 -13.77604 -13.64485 -13.35028 -13.27814 -13.04992 -12.93731 -12.77483 -12.50146 -12.43181 -12.30543 -12.08208 -11.74390 -11.64306 -11.41272 -11.34390 -11.25457 -10.89437 -10.84547 -10.64192 -10.54612 -10.20039 -10.03403 -9.77556 -9.58765 -9.47437 -8.92539 -8.71177 -7.24993 -5.77666 -3.13437 1.53600 2.10024 2.36303 2.61343 2.70142 3.39937 3.47885 3.48078 3.72537 3.84312 3.92539 4.03916 4.26897 4.32722 4.46953 4.52709 4.60334 4.61996 4.70626 4.72029 4.76112 4.84763 4.86512 4.95655 5.05313 5.15842 5.19877 5.25728 5.35917 5.42350 5.45874 5.53100 5.56058 5.60031 5.62658 5.72398 5.77402 5.86140 5.87886 6.22951 6.39917 6.49746 6.58398 7.11077 7.92956 7.94956 8.02083 8.41159 8.44402 9.20779 9.93148 10.13015 11.40447 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.002573 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.634566 B =10878.855866 C =11712.500834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.608 5.608 3 C 0.084 3.916 4 C 0.082 3.918 5 H 0.095 0.905 6 O -0.552 6.552 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.883 3.117 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.522 3.478 18 O -0.533 6.533 19 C -0.104 4.104 20 H 0.091 0.909 21 C -0.118 4.118 22 C -0.029 4.029 23 C 0.177 3.823 24 N -0.293 5.293 25 N -0.303 5.303 26 C 0.149 3.851 27 N -0.470 5.470 28 C 0.106 3.894 29 C -0.119 4.119 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.376 0.624 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.365 0.635 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.218 0.782 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 -23.509 18.117 32.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.341 5.341 3 C -0.040 4.040 4 C 0.021 3.979 5 H 0.113 0.887 6 O -0.357 6.357 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.582 5.582 13 Si 0.713 3.287 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.198 1.198 17 C 0.310 3.690 18 O -0.409 6.409 19 C -0.125 4.125 20 H 0.109 0.891 21 C -0.156 4.156 22 C -0.069 4.069 23 C -0.092 4.092 24 N -0.133 5.133 25 N -0.142 5.142 26 C -0.139 4.139 27 N -0.161 5.161 28 C -0.016 4.016 29 C -0.158 4.158 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.224 0.776 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.199 0.801 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.235 0.765 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.242 -23.962 16.480 31.955 hybrid contribution 0.345 0.133 0.642 0.741 sum -12.897 -23.828 17.121 32.051 Atomic orbital electron populations 1.22059 0.79644 1.04196 1.01862 1.47681 1.06814 1.06001 1.73570 1.22266 0.98554 0.84676 0.98482 1.22546 0.95625 0.88370 0.91321 0.88705 1.86515 1.33291 1.58998 1.56932 1.21205 0.97392 0.92447 0.88750 1.42585 1.69321 1.25692 1.01920 1.19040 1.28297 0.96389 0.93970 0.89325 1.24666 1.00306 0.97064 0.96993 1.69703 1.47080 1.21517 1.19853 0.86547 0.78794 0.80358 0.82975 1.21112 1.21688 1.19847 1.20427 0.87921 0.84985 0.75701 1.90687 1.13951 1.87123 1.49120 1.20650 0.99119 0.93473 0.99284 0.89082 1.21437 0.99178 0.99608 0.95395 1.20556 0.95935 0.85387 1.05014 1.24838 0.97844 0.99660 0.86812 1.74260 1.16733 0.99670 1.22655 1.74549 1.10043 1.18825 1.10831 1.26353 1.03330 0.88963 0.95216 1.46334 1.36134 1.17590 1.16068 1.22500 1.02333 0.94698 0.82072 1.21505 0.97908 0.92094 1.04255 0.92429 0.90324 0.90471 0.89412 0.89245 0.77593 0.94896 0.95315 0.80127 0.93023 0.90184 0.88731 0.87297 0.89228 0.76544 0.87430 0.88439 0.89761 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 9.56 59.85 0.57 0.92 16 2 N -0.61 -5.50 2.81 -181.57 -0.51 -6.01 16 3 C 0.08 0.91 5.13 -4.04 -0.02 0.89 16 4 C 0.08 1.20 3.27 -26.73 -0.09 1.11 16 5 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 6 O -0.55 -9.27 12.16 -39.49 -0.48 -9.75 16 7 C 0.13 2.42 5.90 -4.04 -0.02 2.39 16 8 N -0.75 -18.07 5.35 -59.91 -0.32 -18.39 16 9 C -0.25 -7.10 10.47 -15.06 -0.16 -7.26 16 10 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 13 Si 0.88 22.76 27.74 -169.99 -4.71 18.04 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 16 H -0.27 -6.83 6.52 56.52 0.37 -6.46 16 17 C 0.52 5.25 6.11 -10.98 -0.07 5.19 16 18 O -0.53 -7.35 14.47 1.30 0.02 -7.33 16 19 C -0.10 -0.65 1.30 -93.88 -0.12 -0.78 16 20 H 0.09 0.31 6.91 -51.93 -0.36 -0.04 16 21 C -0.12 -0.83 4.35 -27.41 -0.12 -0.95 16 22 C -0.03 -0.17 6.02 -26.95 -0.16 -0.33 16 23 C 0.18 1.65 7.02 -155.74 -1.09 0.55 16 24 N -0.29 -3.87 12.23 32.84 0.40 -3.47 16 25 N -0.30 -3.88 12.25 29.60 0.36 -3.52 16 26 C 0.15 1.24 12.83 -90.35 -1.16 0.08 16 27 N -0.47 -3.38 2.72 -114.23 -0.31 -3.69 16 28 C 0.11 0.37 6.53 -3.16 -0.02 0.35 16 29 C -0.12 -0.71 4.36 -27.47 -0.12 -0.83 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.42 8.03 -51.93 -0.42 0.00 16 32 H 0.08 0.31 4.58 -51.93 -0.24 0.07 16 33 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.09 1.07 7.38 -51.92 -0.38 0.69 16 35 H 0.38 6.03 8.55 45.56 0.39 6.42 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.37 8.88 5.53 -40.82 -0.23 8.65 16 39 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 40 H 0.08 0.83 7.91 -51.93 -0.41 0.41 16 41 H 0.09 0.64 5.59 -51.93 -0.29 0.35 16 42 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.27 7.89 -51.93 -0.41 -0.14 16 44 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.11 0.13 8.13 -51.93 -0.42 -0.29 16 46 H 0.10 0.16 7.87 -51.93 -0.41 -0.25 16 47 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 48 H 0.10 0.56 7.75 -51.93 -0.40 0.16 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -39.88 380.18 -8.27 -48.15 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.54 Total: 7.77 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.68 Total: 1.42 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: 0.40 Total: -64.02 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.46 Total: -17.08 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.88 -8.27 -48.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677098710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.308 kcal (2) G-P(sol) polarization free energy of solvation -39.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds