Wall clock time and date at job start Tue Mar 31 2020 21:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00006 * 2 1 4 4 C 1.53003 * 109.47370 * 269.99641 * 3 2 1 5 5 H 1.08995 * 109.46473 * 59.99854 * 4 3 2 6 6 O 1.42903 * 109.47058 * 300.00264 * 4 3 2 7 7 C 1.52999 * 109.47132 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.46718 * 185.00241 * 7 4 3 9 9 C 1.36938 * 120.00005 * 179.97438 * 8 7 4 10 10 H 1.07999 * 119.99974 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00209 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00074 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99849 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47397 * 90.00016 * 13 11 9 15 15 H 1.48506 * 109.46753 * 209.99758 * 13 11 9 16 16 H 1.48499 * 109.47148 * 329.99321 * 13 11 9 17 17 C 1.34780 * 120.00060 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00204 * 183.22218 * 17 2 1 19 19 C 1.50699 * 119.99721 * 3.22764 * 17 2 1 20 20 H 1.09003 * 107.87789 * 314.63593 * 19 17 2 21 21 C 1.50951 * 108.03100 * 71.18589 * 19 17 2 22 22 C 1.53678 * 110.95025 * 194.23824 * 21 19 17 23 23 C 1.51880 * 106.90091 * 280.92248 * 22 21 19 24 24 N 1.29899 * 127.79987 * 245.22025 * 23 22 21 25 25 N 1.29034 * 109.22652 * 179.74876 * 24 23 22 26 26 C 1.30971 * 109.70604 * 0.03566 * 25 24 23 27 27 N 1.34603 * 124.58828 * 65.12376 * 23 22 21 28 28 C 1.47504 * 125.01895 * 0.47125 * 27 23 22 29 29 C 1.50859 * 107.99917 * 198.10503 * 19 17 2 30 30 H 1.09002 * 109.47203 * 264.05738 * 1 2 3 31 31 H 1.09003 * 109.46572 * 24.05404 * 1 2 3 32 32 H 1.08992 * 109.47099 * 144.04952 * 1 2 3 33 33 H 1.08992 * 109.47619 * 30.00063 * 3 2 1 34 34 H 1.09009 * 109.47174 * 150.00043 * 3 2 1 35 35 H 0.96699 * 114.00194 * 300.00086 * 6 4 3 36 36 H 1.08997 * 109.46937 * 304.99723 * 7 4 3 37 37 H 1.08997 * 109.47159 * 65.00495 * 7 4 3 38 38 H 0.97000 * 120.00231 * 359.97438 * 8 7 4 39 39 H 0.96999 * 119.99949 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.18509 * 73.86040 * 21 19 17 41 41 H 1.09000 * 109.18258 * 314.61696 * 21 19 17 42 42 H 1.08998 * 109.96547 * 161.57749 * 22 21 19 43 43 H 1.08996 * 109.96670 * 40.27044 * 22 21 19 44 44 H 1.08002 * 126.60778 * 180.12922 * 26 25 24 45 45 H 1.09003 * 109.93307 * 174.67716 * 28 27 23 46 46 H 1.09000 * 110.00209 * 53.49387 * 28 27 23 47 47 H 1.09001 * 109.14237 * 285.99297 * 29 19 17 48 48 H 1.08998 * 109.15016 * 45.19038 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1161 7 6 3.2181 3.0351 -1.4424 8 7 3.3581 3.5182 -2.8184 9 6 4.0124 4.6950 -3.0676 10 1 4.4256 5.2668 -2.2499 11 6 4.1454 5.1526 -4.3714 12 7 4.7739 6.2839 -4.6109 13 14 3.4314 4.1632 -5.7859 14 1 2.0345 4.5987 -6.0392 15 1 4.2479 4.3844 -7.0065 16 1 3.4443 2.7199 -5.4366 17 6 2.1389 -1.1672 0.0005 18 8 3.3503 -1.1681 0.0596 19 6 1.3871 -2.4713 -0.0724 20 1 0.5535 -2.4166 0.6278 21 6 0.8197 -2.6063 -1.4647 22 6 -0.2411 -3.7169 -1.5204 23 6 0.5056 -5.0377 -1.5890 24 7 0.5214 -5.8936 -2.5660 25 7 1.2773 -6.8893 -2.2465 26 6 1.7716 -6.7018 -1.0482 27 7 1.2883 -5.5247 -0.6082 28 6 1.5357 -4.8611 0.6857 29 6 2.3129 -3.5695 0.3889 30 1 -0.3634 -0.1064 1.0222 31 1 -0.3632 0.9385 -0.4189 32 1 -0.3633 -0.8319 -0.6033 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1384 0.5139 35 1 4.0873 0.5459 -1.7126 36 1 2.6711 3.7708 -0.8530 37 1 4.2064 2.8836 -1.0083 38 1 2.9873 3.0044 -3.5529 39 1 4.8665 6.6038 -5.5220 40 1 1.6257 -2.8458 -2.1582 41 1 0.3642 -1.6608 -1.7590 42 1 -0.8622 -3.5940 -2.4076 43 1 -0.8602 -3.6854 -0.6240 44 1 2.4385 -7.3638 -0.5158 45 1 2.1277 -5.5114 1.3297 46 1 0.5885 -4.6219 1.1691 47 1 3.0497 -3.7665 -0.3898 48 1 2.8273 -3.2467 1.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677098710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:00 Heat of formation + Delta-G solvation = -12.041982 kcal Electronic energy + Delta-G solvation = -30129.175014 eV Core-core repulsion = 26027.180373 eV Total energy + Delta-G solvation = -4101.994641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.25012 -41.45535 -39.05579 -37.79698 -36.52910 -35.98776 -35.17040 -33.51798 -33.11359 -31.38387 -30.73056 -28.35360 -27.97899 -26.53427 -25.35463 -24.27613 -23.41149 -22.86966 -22.12830 -21.20741 -20.07721 -19.83289 -18.70557 -18.02163 -17.79102 -17.02797 -16.88595 -16.63897 -16.46110 -16.40547 -15.98621 -15.73179 -15.52120 -15.18781 -14.92297 -14.80705 -14.38043 -14.24156 -13.85734 -13.77186 -13.59358 -13.42174 -13.34367 -13.16346 -13.03732 -12.87110 -12.70557 -12.49159 -12.35739 -12.29852 -11.98560 -11.89213 -11.87149 -11.86927 -11.31562 -11.20192 -11.10797 -11.03668 -10.63968 -10.18590 -9.51983 -9.34785 -8.07516 -5.40446 0.95726 1.34703 1.38183 1.45858 1.63442 1.64785 1.90305 2.04163 2.44296 3.20758 3.22388 3.29196 3.42912 3.53375 3.62259 3.65184 3.85109 3.87225 3.96845 4.03300 4.13082 4.22791 4.25174 4.27293 4.37953 4.39641 4.43476 4.48610 4.55707 4.69263 4.72690 4.83470 4.84922 4.88292 4.90923 5.00111 5.06527 5.14863 5.19116 5.20344 5.30244 5.51574 5.70058 6.01357 6.16636 6.44369 6.70797 7.03552 7.23389 7.76133 7.80284 7.98057 9.13836 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.002573 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.634566 B =10878.855866 C =11712.500834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.607 5.607 3 C 0.093 3.907 4 C 0.092 3.908 5 H 0.101 0.899 6 O -0.568 6.568 7 C 0.125 3.875 8 N -0.755 5.755 9 C -0.236 4.236 10 H 0.059 0.941 11 C -0.062 4.062 12 N -0.982 5.982 13 Si 0.954 3.046 14 H -0.272 1.272 15 H -0.295 1.295 16 H -0.262 1.262 17 C 0.512 3.488 18 O -0.580 6.580 19 C -0.097 4.097 20 H 0.136 0.864 21 C -0.108 4.108 22 C -0.022 4.022 23 C 0.176 3.824 24 N -0.351 5.351 25 N -0.361 5.361 26 C 0.159 3.841 27 N -0.467 5.467 28 C 0.109 3.891 29 C -0.115 4.115 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.376 0.624 36 H 0.047 0.953 37 H 0.022 0.978 38 H 0.366 0.634 39 H 0.259 0.741 40 H 0.035 0.965 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.133 0.867 44 H 0.256 0.744 45 H 0.136 0.864 46 H 0.132 0.868 47 H 0.045 0.955 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.088 -25.109 20.532 36.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.339 5.339 3 C -0.031 4.031 4 C 0.032 3.968 5 H 0.118 0.882 6 O -0.374 6.374 7 C -0.002 4.002 8 N -0.401 5.401 9 C -0.367 4.367 10 H 0.077 0.923 11 C -0.253 4.253 12 N -0.632 5.632 13 Si 0.782 3.218 14 H -0.198 1.198 15 H -0.222 1.222 16 H -0.187 1.187 17 C 0.302 3.698 18 O -0.459 6.459 19 C -0.118 4.118 20 H 0.154 0.846 21 C -0.146 4.146 22 C -0.061 4.061 23 C -0.094 4.094 24 N -0.190 5.190 25 N -0.200 5.200 26 C -0.130 4.130 27 N -0.157 5.157 28 C -0.012 4.012 29 C -0.153 4.153 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.224 0.776 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.199 0.801 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.151 0.849 44 H 0.272 0.728 45 H 0.155 0.845 46 H 0.150 0.850 47 H 0.064 0.936 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.165 -25.590 18.943 35.707 hybrid contribution 1.308 0.689 0.023 1.479 sum -14.857 -24.901 18.966 34.648 Atomic orbital electron populations 1.22384 0.76943 1.05159 1.04107 1.47795 1.08429 1.04888 1.72744 1.22018 0.99086 0.86501 0.95523 1.22512 0.94547 0.85834 0.93911 0.88154 1.86491 1.33590 1.59429 1.57880 1.21454 0.97933 0.94926 0.85900 1.42634 1.68745 1.24348 1.04324 1.19060 1.27140 0.97320 0.93151 0.92265 1.25472 1.01579 0.98395 0.99894 1.69870 1.49354 1.23643 1.20338 0.85418 0.78242 0.79151 0.79020 1.19797 1.22221 1.18728 1.21171 0.87657 0.86348 0.74650 1.90669 1.16184 1.87862 1.51191 1.20703 1.00020 0.91282 0.99752 0.84598 1.21318 0.98194 1.00261 0.94867 1.20722 0.95433 0.82858 1.07120 1.25391 0.97597 0.99962 0.86477 1.74123 1.18696 1.01155 1.25051 1.74412 1.11981 1.20146 1.13439 1.27073 1.02269 0.89505 0.94149 1.46550 1.35160 1.17142 1.16879 1.22843 1.04181 0.93497 0.80655 1.21435 0.97443 0.93399 1.03029 0.89583 0.90068 0.88836 0.86675 0.90623 0.77564 0.93487 0.95961 0.80098 0.93242 0.94555 0.88091 0.87384 0.84922 0.72801 0.84549 0.85035 0.93617 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 9.56 127.77 1.22 1.55 16 2 N -0.61 -9.18 2.81 -846.76 -2.38 -11.56 16 3 C 0.09 1.82 5.13 86.38 0.44 2.26 16 4 C 0.09 2.56 3.27 30.60 0.10 2.66 16 5 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 6 O -0.57 -18.84 12.16 -144.91 -1.76 -20.61 16 7 C 0.12 4.53 5.90 86.38 0.51 5.04 16 8 N -0.75 -36.03 5.35 -343.47 -1.84 -37.87 16 9 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 10 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 11 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 12 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 13 Si 0.95 47.39 27.74 68.60 1.90 49.29 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 16 H -0.26 -12.40 6.52 99.48 0.65 -11.75 16 17 C 0.51 9.31 6.11 87.66 0.54 9.84 16 18 O -0.58 -15.87 14.47 1.02 0.01 -15.85 16 19 C -0.10 -0.92 1.30 -12.90 -0.02 -0.93 16 20 H 0.14 0.11 6.91 -2.39 -0.02 0.09 16 21 C -0.11 -1.29 4.35 30.16 0.13 -1.16 16 22 C -0.02 -0.20 6.02 30.45 0.18 -0.01 16 23 C 0.18 3.05 7.02 138.82 0.98 4.02 16 24 N -0.35 -9.44 12.23 -50.00 -0.61 -10.05 16 25 N -0.36 -9.40 12.25 -60.28 -0.74 -10.14 16 26 C 0.16 2.44 12.83 180.25 2.31 4.75 16 27 N -0.47 -5.65 2.72 -515.32 -1.40 -7.05 16 28 C 0.11 0.31 6.53 86.40 0.56 0.87 16 29 C -0.11 -1.09 4.36 30.11 0.13 -0.96 16 30 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.08 0.51 8.03 -2.39 -0.02 0.49 16 32 H 0.09 0.27 4.58 -2.39 -0.01 0.26 16 33 H 0.12 1.64 8.07 -2.39 -0.02 1.62 16 34 H 0.08 1.73 7.38 -2.38 -0.02 1.71 16 35 H 0.38 12.31 8.55 -74.06 -0.63 11.67 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.37 17.31 5.53 -92.71 -0.51 16.80 16 39 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.04 0.76 7.91 -2.39 -0.02 0.74 16 41 H 0.10 1.08 5.59 -2.39 -0.01 1.06 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.13 0.05 7.89 -2.39 -0.02 0.03 16 44 H 0.26 1.35 8.06 -2.91 -0.02 1.32 16 45 H 0.14 -0.33 8.13 -2.39 -0.02 -0.35 16 46 H 0.13 -0.42 7.87 -2.39 -0.02 -0.44 16 47 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 48 H 0.10 0.93 7.75 -2.39 -0.02 0.91 16 Total: -1.00 -93.54 380.18 1.72 -91.82 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.21 Total: 23.77 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 8.44 Total: 11.84 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -6.66 Total: -140.26 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.75 Total: -36.46 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.90 Total: 49.29 kcal Total: -93.54 1.72 -91.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677098710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.777 kcal (2) G-P(sol) polarization free energy of solvation -93.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds