Wall clock time and date at job start Tue Mar 31 2020 21:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00032 * 2 1 4 4 C 1.52993 * 109.47106 * 89.99774 * 3 2 1 5 5 H 1.08999 * 109.47163 * 60.00545 * 4 3 2 6 6 O 1.42898 * 109.47359 * 300.00011 * 4 3 2 7 7 C 1.53008 * 109.47301 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47505 * 184.99989 * 7 4 3 9 9 C 1.36936 * 120.00106 * 180.02562 * 8 7 4 10 10 H 1.07997 * 120.00077 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00263 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00128 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47343 * 89.99551 * 13 11 9 15 15 H 1.48494 * 109.47431 * 210.00009 * 13 11 9 16 16 H 1.48503 * 109.47011 * 330.00062 * 13 11 9 17 17 C 1.34783 * 120.00049 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00003 * 184.49153 * 17 2 1 19 19 C 1.50697 * 119.99810 * 4.48846 * 17 2 1 20 20 H 1.08998 * 107.87979 * 43.89057 * 19 17 2 21 21 C 1.50948 * 108.03231 * 287.33518 * 19 17 2 22 22 C 1.53675 * 110.96186 * 165.70266 * 21 19 17 23 23 C 1.51885 * 106.89604 * 79.10321 * 22 21 19 24 24 N 1.29897 * 127.81146 * 114.88568 * 23 22 21 25 25 N 1.29031 * 109.22176 * 180.26465 * 24 23 22 26 26 C 1.30974 * 109.70863 * 359.92352 * 25 24 23 27 27 N 1.34591 * 124.56751 * 294.92375 * 23 22 21 28 28 C 1.47500 * 125.03807 * 359.45942 * 27 23 22 29 29 C 1.50863 * 108.02936 * 160.43586 * 19 17 2 30 30 H 1.08997 * 109.47180 * 92.92960 * 1 2 3 31 31 H 1.08998 * 109.47201 * 332.92498 * 1 2 3 32 32 H 1.08999 * 109.47007 * 212.92305 * 1 2 3 33 33 H 1.09003 * 109.47342 * 210.00040 * 3 2 1 34 34 H 1.09001 * 109.47106 * 329.99737 * 3 2 1 35 35 H 0.96698 * 114.00199 * 299.99643 * 6 4 3 36 36 H 1.09003 * 109.47047 * 305.00746 * 7 4 3 37 37 H 1.09003 * 109.46569 * 64.99479 * 7 4 3 38 38 H 0.97004 * 119.99903 * 0.02562 * 8 7 4 39 39 H 0.96994 * 120.00417 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.18261 * 286.08637 * 21 19 17 41 41 H 1.09008 * 109.17734 * 45.37414 * 21 19 17 42 42 H 1.09003 * 109.96694 * 198.44405 * 22 21 19 43 43 H 1.08995 * 109.96880 * 319.75244 * 22 21 19 44 44 H 1.07994 * 126.61087 * 179.89682 * 26 25 24 45 45 H 1.09007 * 109.93007 * 185.37044 * 28 27 23 46 46 H 1.08998 * 109.93361 * 306.58913 * 28 27 23 47 47 H 1.09000 * 109.14919 * 314.85936 * 29 19 17 48 48 H 1.09003 * 109.14776 * 74.00349 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4424 5 1 3.0416 0.9508 1.9563 6 8 1.2038 1.8813 2.1161 7 6 3.2180 3.0351 1.4425 8 7 3.5664 3.3979 2.8184 9 6 4.2584 4.5529 3.0677 10 1 4.5478 5.1962 2.2499 11 6 4.5890 4.8963 4.3714 12 7 5.2546 6.0062 4.6111 13 14 4.0904 3.7825 5.7857 14 1 5.1664 2.7905 6.0377 15 1 3.8744 4.5994 7.0068 16 1 2.8339 3.0719 5.4369 17 6 2.1389 -1.1672 0.0005 18 8 3.3489 -1.1688 0.0828 19 6 1.3889 -2.4704 -0.1010 20 1 0.6246 -2.3575 -0.8700 21 6 0.6936 -2.7132 1.2166 22 6 -0.3643 -3.8200 1.0842 23 6 0.3767 -5.1453 1.1179 24 7 0.3019 -6.0769 2.0201 25 7 1.0885 -7.0468 1.6956 26 6 1.6939 -6.7663 0.5685 27 7 1.2503 -5.5559 0.1799 28 6 1.6160 -4.7931 -1.0284 29 6 2.3579 -3.5324 -0.5582 30 1 -0.3633 -0.0525 -1.0263 31 1 -0.3633 0.9150 0.4677 32 1 -0.3633 -0.8626 0.5585 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0283 -0.5139 35 1 0.6267 2.5440 1.7126 36 1 4.1288 2.9285 0.8531 37 1 2.5935 3.8157 1.0079 38 1 3.3068 2.8198 3.5529 39 1 5.4859 6.2460 5.5220 40 1 1.4317 -3.0106 1.9615 41 1 0.2088 -1.7923 1.5408 42 1 -1.0666 -3.7650 1.9160 43 1 -0.8965 -3.7149 0.1389 44 1 2.4106 -7.3863 0.0507 45 1 2.2681 -5.3931 -1.6633 46 1 0.7169 -4.5126 -1.5771 47 1 2.9548 -3.1411 -1.3820 48 1 3.0188 -3.7932 0.2685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677098712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:11 Heat of formation + Delta-G solvation = 20.708555 kcal Electronic energy + Delta-G solvation = -29964.592490 eV Core-core repulsion = 25864.018018 eV Total energy + Delta-G solvation = -4100.574471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.64419 -40.78315 -38.10302 -37.13060 -35.59829 -34.64303 -34.19697 -32.57473 -31.55398 -30.51664 -29.79504 -27.68754 -27.08074 -25.47420 -24.82227 -22.80476 -22.73382 -21.56017 -21.35877 -20.68090 -19.45901 -18.18005 -17.74336 -17.38724 -16.73601 -16.43626 -16.13662 -15.65580 -15.51122 -15.30069 -15.20844 -14.66822 -14.51469 -14.37440 -13.81228 -13.66548 -13.37949 -13.30030 -13.06288 -12.98528 -12.78131 -12.51990 -12.44222 -12.33271 -12.07317 -11.79774 -11.66566 -11.37927 -11.35835 -11.27456 -10.91927 -10.83966 -10.66454 -10.57031 -10.26210 -10.07667 -9.83155 -9.59222 -9.49527 -8.92246 -8.71612 -7.24779 -5.77423 -3.13187 1.51547 2.08222 2.31262 2.58897 2.66499 3.41642 3.47824 3.48449 3.69464 3.81938 3.90643 4.01605 4.25288 4.28758 4.44315 4.49303 4.51091 4.61340 4.67750 4.72368 4.74106 4.82592 4.85367 4.92981 5.03895 5.11842 5.18877 5.26903 5.34697 5.43034 5.45893 5.51710 5.58134 5.59712 5.62311 5.69664 5.79203 5.83984 5.84638 6.22187 6.41327 6.47749 6.57506 7.07769 7.79487 7.89368 7.98086 8.41378 8.42326 9.20886 9.93388 10.13210 11.40655 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.002491 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.840646 B =11238.382640 C =11912.930639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.087 3.913 4 C 0.082 3.918 5 H 0.101 0.899 6 O -0.553 6.553 7 C 0.132 3.868 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.883 3.117 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.512 3.488 18 O -0.533 6.533 19 C -0.103 4.103 20 H 0.093 0.907 21 C -0.124 4.124 22 C -0.028 4.028 23 C 0.176 3.824 24 N -0.293 5.293 25 N -0.303 5.303 26 C 0.149 3.851 27 N -0.470 5.470 28 C 0.107 3.893 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.368 0.632 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.366 0.634 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.218 0.782 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 -22.050 -18.878 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C -0.037 4.037 4 C 0.021 3.979 5 H 0.119 0.881 6 O -0.358 6.358 7 C 0.003 3.997 8 N -0.395 5.395 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.581 5.581 13 Si 0.713 3.287 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.199 1.199 17 C 0.299 3.701 18 O -0.409 6.409 19 C -0.125 4.125 20 H 0.111 0.889 21 C -0.162 4.162 22 C -0.068 4.068 23 C -0.092 4.092 24 N -0.133 5.133 25 N -0.143 5.143 26 C -0.138 4.138 27 N -0.161 5.161 28 C -0.016 4.016 29 C -0.159 4.159 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.214 0.786 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.199 0.801 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.235 0.765 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.233 -23.049 -17.253 32.117 hybrid contribution 0.060 0.480 -0.564 0.743 sum -14.174 -22.568 -17.817 32.057 Atomic orbital electron populations 1.22138 0.79355 1.04662 1.01488 1.47703 1.07097 1.05769 1.73161 1.22214 0.98531 0.84625 0.98304 1.22605 0.85419 0.98332 0.91518 0.88139 1.86608 1.28988 1.62828 1.57375 1.21195 0.96928 0.92730 0.88839 1.42584 1.68538 1.26510 1.01898 1.19035 1.27172 0.97543 0.93962 0.89307 1.24662 1.00125 0.97208 0.97009 1.69701 1.44268 1.24312 1.19863 0.86549 0.78710 0.80489 0.82918 1.21069 1.21691 1.19896 1.20589 0.87954 0.85196 0.76314 1.90751 1.14119 1.87117 1.48893 1.20652 0.98598 0.93435 0.99803 0.88856 1.21553 0.98479 0.99819 0.96344 1.20545 0.96178 0.85191 1.04889 1.24841 0.95949 0.99740 0.88712 1.74258 1.17788 0.98792 1.22475 1.74549 1.08040 1.20482 1.11180 1.26362 1.03462 0.87244 0.96757 1.46341 1.33167 1.16232 1.20395 1.22505 1.01567 0.92960 0.84524 1.21514 0.97719 0.92869 1.03750 0.92773 0.90056 0.90160 0.88797 0.89888 0.78560 0.94727 0.95412 0.80110 0.93020 0.90320 0.88258 0.87246 0.89148 0.76527 0.87375 0.88381 0.88450 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 9.33 59.85 0.56 0.92 16 2 N -0.60 -5.53 2.80 -181.58 -0.51 -6.04 16 3 C 0.09 0.95 5.05 -4.05 -0.02 0.93 16 4 C 0.08 1.21 3.27 -26.73 -0.09 1.12 16 5 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 6 O -0.55 -7.84 12.05 -35.23 -0.42 -8.27 16 7 C 0.13 2.45 5.90 -4.04 -0.02 2.42 16 8 N -0.75 -18.24 5.35 -59.91 -0.32 -18.56 16 9 C -0.25 -7.14 10.47 -15.06 -0.16 -7.30 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 12 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 13 Si 0.88 22.93 27.74 -169.99 -4.71 18.22 16 14 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.27 -6.81 6.52 56.52 0.37 -6.44 16 17 C 0.51 5.32 6.65 -10.98 -0.07 5.25 16 18 O -0.53 -7.91 15.56 5.56 0.09 -7.82 16 19 C -0.10 -0.65 1.31 -93.88 -0.12 -0.77 16 20 H 0.09 0.31 7.08 -51.93 -0.37 -0.05 16 21 C -0.12 -0.83 4.38 -27.41 -0.12 -0.95 16 22 C -0.03 -0.16 6.02 -26.95 -0.16 -0.32 16 23 C 0.18 1.60 7.03 -155.75 -1.09 0.51 16 24 N -0.29 -3.80 12.23 32.84 0.40 -3.40 16 25 N -0.30 -3.83 12.24 29.60 0.36 -3.46 16 26 C 0.15 1.23 12.83 -90.34 -1.16 0.07 16 27 N -0.47 -3.32 2.72 -114.23 -0.31 -3.63 16 28 C 0.11 0.36 6.53 -3.16 -0.02 0.34 16 29 C -0.12 -0.72 4.36 -27.47 -0.12 -0.84 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.44 6.94 -51.93 -0.36 0.08 16 32 H 0.08 0.34 4.26 -51.93 -0.22 0.12 16 33 H 0.09 1.15 7.49 -51.93 -0.39 0.76 16 34 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.37 3.89 8.79 45.56 0.40 4.29 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.37 9.01 5.53 -40.82 -0.23 8.78 16 39 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 40 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 41 H 0.10 0.62 5.22 -51.92 -0.27 0.35 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.25 7.89 -51.93 -0.41 -0.16 16 44 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.11 0.13 8.13 -51.93 -0.42 -0.30 16 46 H 0.10 0.15 7.87 -51.93 -0.41 -0.26 16 47 H 0.10 0.58 7.78 -51.93 -0.40 0.17 16 48 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -40.68 380.20 -8.08 -48.76 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.46 Total: 6.02 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.70 Total: 1.46 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.40 Total: -64.10 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.34 Total: -16.09 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.68 -8.08 -48.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677098712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.466 kcal (2) G-P(sol) polarization free energy of solvation -40.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds