Wall clock time and date at job start Tue Mar 31 2020 21:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00032 * 2 1 4 4 C 1.52993 * 109.47106 * 89.99774 * 3 2 1 5 5 H 1.08999 * 109.47163 * 60.00545 * 4 3 2 6 6 O 1.42898 * 109.47359 * 300.00011 * 4 3 2 7 7 C 1.53008 * 109.47301 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47505 * 184.99989 * 7 4 3 9 9 C 1.36936 * 120.00106 * 180.02562 * 8 7 4 10 10 H 1.07997 * 120.00077 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00263 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00128 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47343 * 89.99551 * 13 11 9 15 15 H 1.48494 * 109.47431 * 210.00009 * 13 11 9 16 16 H 1.48503 * 109.47011 * 330.00062 * 13 11 9 17 17 C 1.34783 * 120.00049 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00003 * 184.49153 * 17 2 1 19 19 C 1.50697 * 119.99810 * 4.48846 * 17 2 1 20 20 H 1.08998 * 107.87979 * 43.89057 * 19 17 2 21 21 C 1.50948 * 108.03231 * 287.33518 * 19 17 2 22 22 C 1.53675 * 110.96186 * 165.70266 * 21 19 17 23 23 C 1.51885 * 106.89604 * 79.10321 * 22 21 19 24 24 N 1.29897 * 127.81146 * 114.88568 * 23 22 21 25 25 N 1.29031 * 109.22176 * 180.26465 * 24 23 22 26 26 C 1.30974 * 109.70863 * 359.92352 * 25 24 23 27 27 N 1.34591 * 124.56751 * 294.92375 * 23 22 21 28 28 C 1.47500 * 125.03807 * 359.45942 * 27 23 22 29 29 C 1.50863 * 108.02936 * 160.43586 * 19 17 2 30 30 H 1.08997 * 109.47180 * 92.92960 * 1 2 3 31 31 H 1.08998 * 109.47201 * 332.92498 * 1 2 3 32 32 H 1.08999 * 109.47007 * 212.92305 * 1 2 3 33 33 H 1.09003 * 109.47342 * 210.00040 * 3 2 1 34 34 H 1.09001 * 109.47106 * 329.99737 * 3 2 1 35 35 H 0.96698 * 114.00199 * 299.99643 * 6 4 3 36 36 H 1.09003 * 109.47047 * 305.00746 * 7 4 3 37 37 H 1.09003 * 109.46569 * 64.99479 * 7 4 3 38 38 H 0.97004 * 119.99903 * 0.02562 * 8 7 4 39 39 H 0.96994 * 120.00417 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.18261 * 286.08637 * 21 19 17 41 41 H 1.09008 * 109.17734 * 45.37414 * 21 19 17 42 42 H 1.09003 * 109.96694 * 198.44405 * 22 21 19 43 43 H 1.08995 * 109.96880 * 319.75244 * 22 21 19 44 44 H 1.07994 * 126.61087 * 179.89682 * 26 25 24 45 45 H 1.09007 * 109.93007 * 185.37044 * 28 27 23 46 46 H 1.08998 * 109.93361 * 306.58913 * 28 27 23 47 47 H 1.09000 * 109.14919 * 314.85936 * 29 19 17 48 48 H 1.09003 * 109.14776 * 74.00349 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4424 5 1 3.0416 0.9508 1.9563 6 8 1.2038 1.8813 2.1161 7 6 3.2180 3.0351 1.4425 8 7 3.5664 3.3979 2.8184 9 6 4.2584 4.5529 3.0677 10 1 4.5478 5.1962 2.2499 11 6 4.5890 4.8963 4.3714 12 7 5.2546 6.0062 4.6111 13 14 4.0904 3.7825 5.7857 14 1 5.1664 2.7905 6.0377 15 1 3.8744 4.5994 7.0068 16 1 2.8339 3.0719 5.4369 17 6 2.1389 -1.1672 0.0005 18 8 3.3489 -1.1688 0.0828 19 6 1.3889 -2.4704 -0.1010 20 1 0.6246 -2.3575 -0.8700 21 6 0.6936 -2.7132 1.2166 22 6 -0.3643 -3.8200 1.0842 23 6 0.3767 -5.1453 1.1179 24 7 0.3019 -6.0769 2.0201 25 7 1.0885 -7.0468 1.6956 26 6 1.6939 -6.7663 0.5685 27 7 1.2503 -5.5559 0.1799 28 6 1.6160 -4.7931 -1.0284 29 6 2.3579 -3.5324 -0.5582 30 1 -0.3633 -0.0525 -1.0263 31 1 -0.3633 0.9150 0.4677 32 1 -0.3633 -0.8626 0.5585 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0283 -0.5139 35 1 0.6267 2.5440 1.7126 36 1 4.1288 2.9285 0.8531 37 1 2.5935 3.8157 1.0079 38 1 3.3068 2.8198 3.5529 39 1 5.4859 6.2460 5.5220 40 1 1.4317 -3.0106 1.9615 41 1 0.2088 -1.7923 1.5408 42 1 -1.0666 -3.7650 1.9160 43 1 -0.8965 -3.7149 0.1389 44 1 2.4106 -7.3863 0.0507 45 1 2.2681 -5.3931 -1.6633 46 1 0.7169 -4.5126 -1.5771 47 1 2.9548 -3.1411 -1.3820 48 1 3.0188 -3.7932 0.2685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677098712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:10 Heat of formation + Delta-G solvation = -10.764638 kcal Electronic energy + Delta-G solvation = -29965.957270 eV Core-core repulsion = 25864.018018 eV Total energy + Delta-G solvation = -4101.939251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.26013 -41.51993 -39.15090 -37.87763 -36.57303 -35.94109 -35.17469 -33.54676 -33.13657 -31.45642 -30.75810 -28.37025 -27.95435 -26.52706 -25.38193 -24.31440 -23.42190 -22.89436 -22.21100 -21.21597 -20.15588 -19.84560 -18.72752 -18.02583 -17.73376 -17.14719 -16.86524 -16.68647 -16.52875 -16.39315 -16.00701 -15.78794 -15.52674 -15.21155 -14.95995 -14.84819 -14.45827 -14.23023 -13.86505 -13.75825 -13.65223 -13.49756 -13.28839 -13.16222 -13.09748 -12.89555 -12.71282 -12.50367 -12.36860 -12.28907 -12.00769 -11.90290 -11.89278 -11.82178 -11.33487 -11.25484 -11.12169 -11.06588 -10.68808 -10.19260 -9.53400 -9.35922 -8.08468 -5.41290 0.94794 1.34510 1.35398 1.43794 1.55870 1.63745 1.89180 1.98488 2.43000 3.19099 3.22133 3.27787 3.38552 3.49781 3.61417 3.62398 3.82505 3.85221 3.93253 4.02377 4.08316 4.22146 4.23807 4.25683 4.35051 4.37808 4.41795 4.47815 4.56183 4.69611 4.72285 4.83023 4.86324 4.87813 4.90977 4.99974 5.06338 5.11418 5.17319 5.22289 5.30531 5.51332 5.69060 6.00300 6.15771 6.39449 6.85164 7.02549 7.15283 7.75317 7.79181 7.96444 9.12776 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.002491 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.840646 B =11238.382640 C =11912.930639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.602 5.602 3 C 0.095 3.905 4 C 0.101 3.899 5 H 0.065 0.935 6 O -0.561 6.561 7 C 0.125 3.875 8 N -0.756 5.756 9 C -0.235 4.235 10 H 0.062 0.938 11 C -0.060 4.060 12 N -0.980 5.980 13 Si 0.951 3.049 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.256 1.256 17 C 0.502 3.498 18 O -0.589 6.589 19 C -0.095 4.095 20 H 0.140 0.860 21 C -0.114 4.114 22 C -0.021 4.021 23 C 0.175 3.825 24 N -0.350 5.350 25 N -0.361 5.361 26 C 0.159 3.841 27 N -0.468 5.468 28 C 0.110 3.890 29 C -0.117 4.117 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.387 0.613 36 H 0.028 0.972 37 H 0.047 0.953 38 H 0.365 0.635 39 H 0.259 0.741 40 H 0.036 0.964 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.256 0.744 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.099 0.901 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.858 -23.257 -21.494 36.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.333 5.333 3 C -0.029 4.029 4 C 0.040 3.960 5 H 0.084 0.916 6 O -0.368 6.368 7 C -0.002 4.002 8 N -0.402 5.402 9 C -0.366 4.366 10 H 0.080 0.920 11 C -0.252 4.252 12 N -0.631 5.631 13 Si 0.779 3.221 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.181 1.181 17 C 0.292 3.708 18 O -0.469 6.469 19 C -0.116 4.116 20 H 0.158 0.842 21 C -0.153 4.153 22 C -0.060 4.060 23 C -0.095 4.095 24 N -0.189 5.189 25 N -0.199 5.199 26 C -0.130 4.130 27 N -0.158 5.158 28 C -0.010 4.010 29 C -0.155 4.155 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.236 0.764 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.198 0.802 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.271 0.729 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.117 0.883 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.310 -24.272 -19.920 35.855 hybrid contribution 1.032 0.929 0.136 1.395 sum -16.278 -23.343 -19.784 34.660 Atomic orbital electron populations 1.22464 0.76543 1.05545 1.03883 1.47830 1.08740 1.04650 1.72082 1.21997 0.99075 0.86570 0.95262 1.22226 0.85007 0.95009 0.93791 0.91642 1.86572 1.28588 1.63645 1.57987 1.21463 0.97497 0.95427 0.85792 1.42653 1.68160 1.25059 1.04323 1.19066 1.26223 0.98147 0.93167 0.92026 1.25442 1.01033 0.98908 0.99841 1.69859 1.46374 1.26505 1.20345 0.85464 0.78855 0.78436 0.79372 1.21147 1.21641 1.18072 1.21408 0.87574 0.86740 0.75107 1.90729 1.16785 1.87976 1.51443 1.20712 0.99117 0.90965 1.00781 0.84235 1.21450 0.97855 1.00479 0.95510 1.20718 0.95450 0.82562 1.07267 1.25418 0.95841 1.00011 0.88218 1.74122 1.19694 1.00327 1.24798 1.74413 1.09926 1.21889 1.13721 1.27072 1.02587 0.87795 0.95569 1.46556 1.32281 1.15942 1.21005 1.22837 1.03372 0.91537 0.83300 1.21453 0.97494 0.94149 1.02408 0.89561 0.89765 0.88782 0.90474 0.86409 0.76404 0.95363 0.93533 0.80242 0.93220 0.94519 0.87461 0.87180 0.84834 0.72850 0.84555 0.84892 0.88271 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 9.33 127.77 1.19 1.53 16 2 N -0.60 -9.31 2.80 -846.78 -2.37 -11.68 16 3 C 0.10 1.88 5.05 86.38 0.44 2.32 16 4 C 0.10 2.87 3.27 30.59 0.10 2.97 16 5 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 6 O -0.56 -14.51 12.05 -148.98 -1.80 -16.31 16 7 C 0.13 4.57 5.90 86.38 0.51 5.08 16 8 N -0.76 -36.61 5.35 -343.45 -1.84 -38.45 16 9 C -0.24 -13.75 10.47 84.03 0.88 -12.86 16 10 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 11 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 12 N -0.98 -63.95 13.97 21.65 0.30 -63.64 16 13 Si 0.95 47.91 27.74 68.60 1.90 49.81 16 14 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 16 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 17 C 0.50 9.65 6.65 87.66 0.58 10.24 16 18 O -0.59 -17.82 15.56 -3.03 -0.05 -17.87 16 19 C -0.09 -0.91 1.31 -12.90 -0.02 -0.93 16 20 H 0.14 0.08 7.08 -2.39 -0.02 0.07 16 21 C -0.11 -1.30 4.38 30.15 0.13 -1.17 16 22 C -0.02 -0.17 6.02 30.45 0.18 0.01 16 23 C 0.18 2.96 7.03 138.83 0.98 3.93 16 24 N -0.35 -9.25 12.23 -50.00 -0.61 -9.86 16 25 N -0.36 -9.29 12.24 -60.28 -0.74 -10.03 16 26 C 0.16 2.41 12.83 180.25 2.31 4.73 16 27 N -0.47 -5.58 2.72 -515.31 -1.40 -6.98 16 28 C 0.11 0.31 6.53 86.41 0.56 0.87 16 29 C -0.12 -1.15 4.36 30.12 0.13 -1.02 16 30 H 0.09 0.05 8.14 -2.39 -0.02 0.04 16 31 H 0.08 0.52 6.94 -2.39 -0.02 0.50 16 32 H 0.09 0.32 4.26 -2.39 -0.01 0.31 16 33 H 0.08 1.83 7.49 -2.39 -0.02 1.81 16 34 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 35 H 0.39 6.81 8.79 -74.06 -0.65 6.16 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.36 17.67 5.53 -92.70 -0.51 17.16 16 39 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.04 0.73 7.91 -2.39 -0.02 0.72 16 41 H 0.11 1.05 5.22 -2.38 -0.01 1.04 16 42 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.13 -0.04 7.89 -2.39 -0.02 -0.06 16 44 H 0.26 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.14 -0.31 8.13 -2.38 -0.02 -0.33 16 46 H 0.13 -0.45 7.87 -2.39 -0.02 -0.47 16 47 H 0.10 0.98 7.78 -2.39 -0.02 0.96 16 48 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 Total: -1.00 -96.35 380.20 1.63 -94.71 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.22 Total: 17.79 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 8.45 Total: 12.50 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -6.65 Total: -140.63 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.84 Total: -34.18 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.90 Total: 49.81 kcal Total: -96.35 1.63 -94.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677098712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.949 kcal (2) G-P(sol) polarization free energy of solvation -96.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds