Wall clock time and date at job start Tue Mar 31 2020 21:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00352 * 2 1 4 4 C 1.53000 * 109.47012 * 125.00187 * 3 2 1 5 5 N 1.46504 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59552 * 125.33145 * 5 4 3 7 7 C 1.36595 * 106.83835 * 180.11420 * 6 5 4 8 8 C 1.47526 * 125.77034 * 179.84039 * 7 6 5 9 9 O 1.21592 * 119.99927 * 353.65020 * 8 7 6 10 10 N 1.34777 * 119.99764 * 173.65118 * 8 7 6 11 11 C 1.46495 * 120.00110 * 3.29873 * 10 8 7 12 12 C 1.46501 * 119.99798 * 183.29267 * 10 8 7 13 13 C 1.52998 * 109.47086 * 90.00265 * 12 10 8 14 14 H 1.08997 * 109.47020 * 59.99932 * 13 12 10 15 15 O 1.42901 * 109.47207 * 300.00118 * 13 12 10 16 16 C 1.52998 * 109.47250 * 180.02562 * 13 12 10 17 17 N 1.46504 * 109.47139 * 185.00099 * 16 13 12 18 18 C 1.46491 * 120.00159 * 89.99853 * 17 16 13 19 19 C 1.36941 * 119.99696 * 269.99510 * 17 16 13 20 20 H 1.07998 * 120.00002 * 24.21182 * 19 17 16 21 21 C 1.38810 * 119.99732 * 204.20643 * 19 17 16 22 22 N 1.31620 * 120.00201 * 13.79493 * 21 19 17 23 23 Si 1.86803 * 119.99665 * 193.78862 * 21 19 17 24 24 H 1.48507 * 109.46929 * 90.00623 * 23 21 19 25 25 H 1.48507 * 109.47006 * 210.00164 * 23 21 19 26 26 H 1.48493 * 109.47442 * 330.00567 * 23 21 19 27 27 N 1.34403 * 108.45877 * 359.57403 * 7 6 5 28 28 N 1.28762 * 109.51920 * 0.26472 * 27 7 6 29 29 H 1.07994 * 120.00751 * 179.97438 * 1 2 3 30 30 H 1.08010 * 119.99193 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.98921 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47188 * 5.00085 * 3 2 1 33 33 H 1.08997 * 109.46834 * 244.99617 * 3 2 1 34 34 H 1.08999 * 109.47382 * 59.99392 * 4 3 2 35 35 H 1.09003 * 109.47273 * 299.99983 * 4 3 2 36 36 H 1.08004 * 126.58241 * 359.95745 * 6 5 4 37 37 H 1.08998 * 109.47260 * 84.25332 * 11 10 8 38 38 H 1.09003 * 109.46736 * 204.25402 * 11 10 8 39 39 H 1.08997 * 109.47203 * 324.24835 * 11 10 8 40 40 H 1.08995 * 109.47200 * 210.00495 * 12 10 8 41 41 H 1.08997 * 109.47246 * 330.00336 * 12 10 8 42 42 H 0.96704 * 114.00168 * 300.00043 * 15 13 12 43 43 H 1.09000 * 109.47172 * 305.00031 * 16 13 12 44 44 H 1.08997 * 109.47637 * 64.99929 * 16 13 12 45 45 H 1.09001 * 109.47069 * 94.67043 * 18 17 16 46 46 H 1.08998 * 109.47117 * 214.67207 * 18 17 16 47 47 H 1.09005 * 109.47113 * 334.67295 * 18 17 16 48 48 H 0.96998 * 120.00019 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 7 3.7673 2.6019 1.1820 6 6 3.8535 3.4797 2.2015 7 6 4.6284 4.5169 1.7661 8 6 4.9893 5.7125 2.5514 9 8 4.4956 5.8914 3.6480 10 7 5.8663 6.6065 2.0531 11 6 6.4058 6.4289 0.7027 12 6 6.2798 7.7559 2.8618 13 6 7.5168 7.3840 3.6817 14 1 8.3272 7.1024 3.0094 15 8 7.2064 6.2845 4.5402 16 6 7.9483 8.5841 4.5269 17 7 9.1997 8.2685 5.2202 18 6 10.4850 8.5659 4.5836 19 6 9.1677 7.6955 6.4636 20 1 8.3034 7.1273 6.7743 21 6 10.2463 7.8449 7.3245 22 7 11.1720 8.7453 7.0697 23 14 10.3840 6.7681 8.8448 24 1 11.1401 5.5344 8.5107 25 1 11.0970 7.5112 9.9148 26 1 9.0245 6.4027 9.3173 27 7 5.0114 4.2612 0.5034 28 7 4.5189 3.1334 0.1245 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5399 0.9355 -0.0004 31 1 1.8498 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4024 -0.9313 34 1 3.7399 0.5063 1.0921 35 1 2.4774 1.2354 2.1130 36 1 3.3954 3.3829 3.1747 37 1 5.7094 6.8461 -0.0246 38 1 7.3642 6.9421 0.6241 39 1 6.5454 5.3663 0.5041 40 1 6.5165 8.5945 2.2071 41 1 5.4694 8.0375 3.5342 42 1 6.4921 6.4642 5.1668 43 1 8.0993 9.4484 3.8801 44 1 7.1738 8.8098 5.2598 45 1 10.8411 9.5393 4.9211 46 1 11.2109 7.7994 4.8550 47 1 10.3595 8.5804 3.5009 48 1 11.9255 8.8499 7.6715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677174347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:50 Heat of formation + Delta-G solvation = 72.262814 kcal Electronic energy + Delta-G solvation = -29110.131680 eV Core-core repulsion = 25011.792770 eV Total energy + Delta-G solvation = -4098.338911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.42689 -39.54726 -37.15396 -36.84288 -35.29604 -34.46767 -34.03607 -31.41019 -31.17520 -30.10499 -29.13781 -26.83321 -25.97858 -25.53931 -24.98355 -23.26671 -22.07386 -21.70649 -20.47743 -20.37039 -19.64323 -17.70648 -16.80912 -16.56160 -16.44962 -16.19955 -15.86137 -15.60894 -15.04820 -14.97432 -14.73421 -14.48982 -14.26126 -13.68100 -13.61200 -13.38694 -13.21686 -13.07826 -12.84827 -12.74276 -12.66129 -12.31088 -11.98856 -11.82565 -11.74751 -11.48061 -10.98706 -10.93877 -10.77673 -10.64861 -10.55481 -10.46316 -10.30251 -10.00081 -9.98755 -9.83566 -9.79352 -9.50738 -9.44175 -8.50774 -8.24876 -6.56986 -5.59777 -3.05623 0.92727 1.54077 1.63065 1.83296 3.03104 3.37987 3.47979 3.53713 3.55875 3.89705 4.02559 4.14138 4.33832 4.49730 4.59020 4.61377 4.66811 4.76438 4.93638 5.08510 5.16168 5.22329 5.30810 5.35133 5.35761 5.46894 5.54401 5.57654 5.67070 5.83970 5.96095 5.98226 6.04709 6.07809 6.11948 6.15831 6.17799 6.56472 6.67095 6.78044 6.88771 7.43025 7.44347 7.74951 7.78775 7.97481 8.26165 8.47881 8.56719 9.36094 9.98682 10.47909 11.45377 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.002191 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.493025 B =12773.966216 C =13695.265615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C -0.106 4.106 4 C 0.126 3.874 5 N -0.362 5.362 6 C 0.093 3.907 7 C -0.091 4.091 8 C 0.607 3.393 9 O -0.538 6.538 10 N -0.592 5.592 11 C 0.074 3.926 12 C 0.081 3.919 13 C 0.072 3.928 14 H 0.086 0.914 15 O -0.542 6.542 16 C 0.125 3.875 17 N -0.593 5.593 18 C 0.162 3.838 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.005 4.005 22 N -0.912 5.912 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.280 1.280 27 N -0.204 5.204 28 N -0.071 5.071 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.204 0.796 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.368 0.632 43 H 0.042 0.958 44 H 0.052 0.948 45 H 0.031 0.969 46 H 0.038 0.962 47 H -0.005 1.005 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.332 -13.779 -16.783 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.178 4.178 3 C -0.144 4.144 4 C 0.005 3.995 5 N -0.147 5.147 6 C -0.063 4.063 7 C -0.230 4.230 8 C 0.393 3.607 9 O -0.414 6.414 10 N -0.323 5.323 11 C -0.069 4.069 12 C -0.042 4.042 13 C 0.008 3.992 14 H 0.104 0.896 15 O -0.346 6.346 16 C -0.004 4.004 17 N -0.315 5.315 18 C 0.017 3.983 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.202 4.202 22 N -0.558 5.558 23 Si 0.735 3.265 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.205 1.205 27 N -0.077 5.077 28 N -0.051 5.051 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.221 0.779 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.214 0.786 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.014 0.986 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.469 -14.145 -17.873 29.976 hybrid contribution -0.519 -0.347 1.974 2.071 sum -19.988 -14.492 -15.899 29.365 Atomic orbital electron populations 1.23969 0.95888 1.02325 0.99493 1.22743 0.96021 0.97668 1.01340 1.21019 0.97979 0.96759 0.98611 1.22031 0.94477 0.81458 1.01539 1.50500 1.35881 1.17499 1.10830 1.23384 0.98378 0.89310 0.95255 1.21519 1.07825 1.00319 0.93336 1.16658 0.78919 0.80778 0.84359 1.90766 1.54707 1.75834 1.20110 1.47479 1.43318 1.25077 1.16428 1.22148 0.98483 1.04529 0.81737 1.22455 0.99331 0.87161 0.95271 1.23176 0.93959 0.90420 0.91612 0.89635 1.86554 1.58377 1.38254 1.51450 1.21334 0.90647 0.93456 0.94933 1.43736 0.99362 1.71718 1.16642 1.20783 0.87186 1.00264 0.90032 1.19202 1.03343 1.24079 0.89999 0.91270 1.25026 0.99042 0.98186 0.97936 1.70067 1.13548 1.33850 1.38375 0.86248 0.77618 0.80023 0.82626 1.21725 1.22034 1.20512 1.74754 1.14848 1.07505 1.10619 1.81950 1.08951 1.05561 1.08655 0.87983 0.88387 0.86672 0.90572 0.89038 0.88128 0.87522 0.77902 0.92762 0.91393 0.88707 0.89908 0.89562 0.78599 0.93942 0.92997 0.95055 0.94286 0.98596 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 14.32 29.01 0.42 -0.26 16 2 C -0.16 -0.59 9.52 -36.03 -0.34 -0.94 16 3 C -0.11 -0.49 5.86 -27.88 -0.16 -0.65 16 4 C 0.13 0.59 6.52 -4.04 -0.03 0.56 16 5 N -0.36 -3.19 3.69 -61.06 -0.23 -3.42 16 6 C 0.09 0.94 11.28 -16.84 -0.19 0.75 16 7 C -0.09 -1.20 6.70 -83.55 -0.56 -1.76 16 8 C 0.61 9.30 7.13 -12.47 -0.09 9.21 16 9 O -0.54 -9.28 15.45 1.13 0.02 -9.26 16 10 N -0.59 -8.50 2.83 -182.82 -0.52 -9.02 16 11 C 0.07 0.90 9.60 59.84 0.57 1.47 16 12 C 0.08 1.17 5.14 -4.04 -0.02 1.15 16 13 C 0.07 1.30 3.48 -26.73 -0.09 1.21 16 14 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 15 O -0.54 -11.18 11.43 -39.38 -0.45 -11.63 16 16 C 0.13 2.55 5.33 -4.04 -0.02 2.53 16 17 N -0.59 -15.25 2.90 -181.12 -0.52 -15.78 16 18 C 0.16 4.11 8.99 59.84 0.54 4.64 16 19 C -0.24 -6.71 9.20 -15.06 -0.14 -6.85 16 20 H 0.07 1.95 7.55 -52.49 -0.40 1.55 16 21 C 0.00 -0.14 5.08 -17.43 -0.09 -0.22 16 22 N -0.91 -27.53 10.83 55.49 0.60 -26.93 16 23 Si 0.90 22.95 29.58 -169.99 -5.03 17.92 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 N -0.20 -2.66 8.80 32.85 0.29 -2.37 16 28 N -0.07 -0.84 13.65 60.35 0.82 -0.01 16 29 H 0.10 0.29 8.06 -52.49 -0.42 -0.13 16 30 H 0.10 0.36 7.84 -52.48 -0.41 -0.05 16 31 H 0.12 0.32 8.06 -52.49 -0.42 -0.11 16 32 H 0.08 0.39 7.79 -51.93 -0.40 -0.01 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.20 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 39 H 0.09 1.23 5.28 -51.93 -0.27 0.95 16 40 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 41 H 0.09 1.28 7.38 -51.93 -0.38 0.90 16 42 H 0.37 7.12 8.55 45.56 0.39 7.51 16 43 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 44 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 45 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 46 H 0.04 1.07 7.41 -51.93 -0.38 0.68 16 47 H 0.00 -0.10 8.04 -51.93 -0.42 -0.52 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -35.70 401.12 -6.02 -41.73 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.85 Total: 1.87 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.21 Total: 10.85 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.45 Total: -57.53 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.43 Total: -20.89 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.70 -6.02 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677174347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.992 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds