Wall clock time and date at job start Tue Mar 31 2020 21:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00352 * 2 1 4 4 C 1.53000 * 109.47012 * 125.00187 * 3 2 1 5 5 N 1.46504 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59552 * 125.33145 * 5 4 3 7 7 C 1.36595 * 106.83835 * 180.11420 * 6 5 4 8 8 C 1.47526 * 125.77034 * 179.84039 * 7 6 5 9 9 O 1.21592 * 119.99927 * 353.65020 * 8 7 6 10 10 N 1.34777 * 119.99764 * 173.65118 * 8 7 6 11 11 C 1.46495 * 120.00110 * 3.29873 * 10 8 7 12 12 C 1.46501 * 119.99798 * 183.29267 * 10 8 7 13 13 C 1.52998 * 109.47086 * 90.00265 * 12 10 8 14 14 H 1.08997 * 109.47020 * 59.99932 * 13 12 10 15 15 O 1.42901 * 109.47207 * 300.00118 * 13 12 10 16 16 C 1.52998 * 109.47250 * 180.02562 * 13 12 10 17 17 N 1.46504 * 109.47139 * 185.00099 * 16 13 12 18 18 C 1.46491 * 120.00159 * 89.99853 * 17 16 13 19 19 C 1.36941 * 119.99696 * 269.99510 * 17 16 13 20 20 H 1.07998 * 120.00002 * 24.21182 * 19 17 16 21 21 C 1.38810 * 119.99732 * 204.20643 * 19 17 16 22 22 N 1.31620 * 120.00201 * 13.79493 * 21 19 17 23 23 Si 1.86803 * 119.99665 * 193.78862 * 21 19 17 24 24 H 1.48507 * 109.46929 * 90.00623 * 23 21 19 25 25 H 1.48507 * 109.47006 * 210.00164 * 23 21 19 26 26 H 1.48493 * 109.47442 * 330.00567 * 23 21 19 27 27 N 1.34403 * 108.45877 * 359.57403 * 7 6 5 28 28 N 1.28762 * 109.51920 * 0.26472 * 27 7 6 29 29 H 1.07994 * 120.00751 * 179.97438 * 1 2 3 30 30 H 1.08010 * 119.99193 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.98921 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47188 * 5.00085 * 3 2 1 33 33 H 1.08997 * 109.46834 * 244.99617 * 3 2 1 34 34 H 1.08999 * 109.47382 * 59.99392 * 4 3 2 35 35 H 1.09003 * 109.47273 * 299.99983 * 4 3 2 36 36 H 1.08004 * 126.58241 * 359.95745 * 6 5 4 37 37 H 1.08998 * 109.47260 * 84.25332 * 11 10 8 38 38 H 1.09003 * 109.46736 * 204.25402 * 11 10 8 39 39 H 1.08997 * 109.47203 * 324.24835 * 11 10 8 40 40 H 1.08995 * 109.47200 * 210.00495 * 12 10 8 41 41 H 1.08997 * 109.47246 * 330.00336 * 12 10 8 42 42 H 0.96704 * 114.00168 * 300.00043 * 15 13 12 43 43 H 1.09000 * 109.47172 * 305.00031 * 16 13 12 44 44 H 1.08997 * 109.47637 * 64.99929 * 16 13 12 45 45 H 1.09001 * 109.47069 * 94.67043 * 18 17 16 46 46 H 1.08998 * 109.47117 * 214.67207 * 18 17 16 47 47 H 1.09005 * 109.47113 * 334.67295 * 18 17 16 48 48 H 0.96998 * 120.00019 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 7 3.7673 2.6019 1.1820 6 6 3.8535 3.4797 2.2015 7 6 4.6284 4.5169 1.7661 8 6 4.9893 5.7125 2.5514 9 8 4.4956 5.8914 3.6480 10 7 5.8663 6.6065 2.0531 11 6 6.4058 6.4289 0.7027 12 6 6.2798 7.7559 2.8618 13 6 7.5168 7.3840 3.6817 14 1 8.3272 7.1024 3.0094 15 8 7.2064 6.2845 4.5402 16 6 7.9483 8.5841 4.5269 17 7 9.1997 8.2685 5.2202 18 6 10.4850 8.5659 4.5836 19 6 9.1677 7.6955 6.4636 20 1 8.3034 7.1273 6.7743 21 6 10.2463 7.8449 7.3245 22 7 11.1720 8.7453 7.0697 23 14 10.3840 6.7681 8.8448 24 1 11.1401 5.5344 8.5107 25 1 11.0970 7.5112 9.9148 26 1 9.0245 6.4027 9.3173 27 7 5.0114 4.2612 0.5034 28 7 4.5189 3.1334 0.1245 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5399 0.9355 -0.0004 31 1 1.8498 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4024 -0.9313 34 1 3.7399 0.5063 1.0921 35 1 2.4774 1.2354 2.1130 36 1 3.3954 3.3829 3.1747 37 1 5.7094 6.8461 -0.0246 38 1 7.3642 6.9421 0.6241 39 1 6.5454 5.3663 0.5041 40 1 6.5165 8.5945 2.2071 41 1 5.4694 8.0375 3.5342 42 1 6.4921 6.4642 5.1668 43 1 8.0993 9.4484 3.8801 44 1 7.1738 8.8098 5.2598 45 1 10.8411 9.5393 4.9211 46 1 11.2109 7.7994 4.8550 47 1 10.3595 8.5804 3.5009 48 1 11.9255 8.8499 7.6715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677174347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:48 Heat of formation + Delta-G solvation = 47.055918 kcal Electronic energy + Delta-G solvation = -29111.224733 eV Core-core repulsion = 25011.792770 eV Total energy + Delta-G solvation = -4099.431964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.25901 -40.70010 -38.67665 -37.33483 -36.75877 -36.02797 -34.67396 -33.29163 -32.19513 -31.14717 -30.12960 -28.10800 -27.80876 -27.02846 -25.57595 -24.56767 -23.11938 -22.77335 -22.08085 -20.78261 -20.63150 -18.83241 -18.50178 -17.68277 -17.33140 -17.27926 -16.78163 -16.76343 -16.36382 -16.11428 -16.04148 -15.59263 -15.30323 -15.14667 -14.85046 -14.64044 -14.46814 -13.97965 -13.90170 -13.72165 -13.68400 -13.57451 -13.10133 -12.95575 -12.79869 -12.61667 -12.52155 -12.47593 -12.22118 -12.07293 -12.03318 -11.84669 -11.83340 -11.75168 -11.31703 -11.18147 -11.03109 -10.56065 -10.37260 -10.26061 -9.53739 -8.62857 -7.77052 -5.24921 0.14784 0.65490 1.03675 1.41074 1.45327 1.47644 1.55982 1.97714 2.31650 2.54339 3.16374 3.33277 3.35712 3.60932 3.73680 3.78749 3.83585 3.96699 4.03193 4.11409 4.22374 4.27121 4.36218 4.36875 4.39335 4.48574 4.58519 4.63172 4.73337 4.80694 4.84068 4.85743 4.96534 4.98837 5.06423 5.19324 5.28048 5.37537 5.44006 5.57681 5.69345 5.72308 5.74544 5.82266 6.35211 6.39681 6.86230 6.99344 7.16573 7.21742 7.92845 8.35821 9.25540 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.002191 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.493025 B =12773.966216 C =13695.265615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C -0.100 4.100 4 C 0.117 3.883 5 N -0.348 5.348 6 C 0.106 3.894 7 C -0.121 4.121 8 C 0.601 3.399 9 O -0.565 6.565 10 N -0.596 5.596 11 C 0.076 3.924 12 C 0.092 3.908 13 C 0.083 3.917 14 H 0.076 0.924 15 O -0.563 6.563 16 C 0.123 3.877 17 N -0.611 5.611 18 C 0.175 3.825 19 C -0.237 4.237 20 H 0.068 0.932 21 C -0.062 4.062 22 N -0.942 5.942 23 Si 0.964 3.036 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.269 1.269 27 N -0.217 5.217 28 N -0.089 5.089 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.231 0.769 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.370 0.630 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.008 0.992 46 H 0.007 0.993 47 H 0.033 0.967 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 -15.036 -17.487 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C -0.138 4.138 4 C -0.002 4.002 5 N -0.133 5.133 6 C -0.052 4.052 7 C -0.260 4.260 8 C 0.388 3.612 9 O -0.444 6.444 10 N -0.326 5.326 11 C -0.067 4.067 12 C -0.032 4.032 13 C 0.021 3.979 14 H 0.094 0.906 15 O -0.368 6.368 16 C -0.004 4.004 17 N -0.334 5.334 18 C 0.030 3.970 19 C -0.368 4.368 20 H 0.085 0.915 21 C -0.256 4.256 22 N -0.590 5.590 23 Si 0.793 3.207 24 H -0.220 1.220 25 H -0.221 1.221 26 H -0.194 1.194 27 N -0.090 5.090 28 N -0.069 5.069 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.218 0.782 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.052 0.948 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.210 -15.426 -18.637 32.174 hybrid contribution -0.098 -0.028 2.103 2.105 sum -21.308 -15.454 -16.534 31.084 Atomic orbital electron populations 1.24102 0.96054 1.02745 0.99229 1.22765 0.96001 0.97551 1.01504 1.20932 0.97686 0.97177 0.97988 1.22478 0.94768 0.79947 1.02980 1.50762 1.34757 1.18072 1.09680 1.23780 0.96956 0.88324 0.96119 1.21463 1.09899 1.00827 0.93827 1.16999 0.78704 0.81297 0.84225 1.90735 1.55809 1.76594 1.21280 1.47576 1.43080 1.24870 1.17052 1.22222 0.99310 1.04300 0.80847 1.22267 0.97280 0.88085 0.95527 1.22962 0.95407 0.88534 0.91028 0.90634 1.86521 1.58695 1.39524 1.52081 1.21537 0.88363 0.95300 0.95208 1.43986 1.01100 1.71856 1.16446 1.20531 0.86638 0.97768 0.92021 1.19452 1.02995 1.23421 0.90949 0.91453 1.25752 0.99248 0.99685 1.00914 1.70215 1.14027 1.35408 1.39372 0.85303 0.77784 0.78101 0.79518 1.22041 1.22140 1.19381 1.74727 1.15397 1.08172 1.10750 1.81870 1.09725 1.05499 1.09790 0.87066 0.88603 0.85471 0.91241 0.90361 0.86662 0.84646 0.75273 0.91397 0.90221 0.89599 0.86796 0.89845 0.78249 0.91414 0.93208 0.97416 0.97459 0.94833 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.32 67.78 0.97 -0.09 16 2 C -0.16 -0.88 9.52 25.64 0.24 -0.63 16 3 C -0.10 -0.76 5.86 29.85 0.17 -0.59 16 4 C 0.12 0.81 6.52 86.38 0.56 1.37 16 5 N -0.35 -5.51 3.69 -347.09 -1.28 -6.79 16 6 C 0.11 1.94 11.28 83.85 0.95 2.89 16 7 C -0.12 -3.07 6.70 40.82 0.27 -2.80 16 8 C 0.60 17.91 7.13 86.69 0.62 18.53 16 9 O -0.57 -19.17 15.45 -0.04 0.00 -19.17 16 10 N -0.60 -16.26 2.83 -850.58 -2.40 -18.67 16 11 C 0.08 1.71 9.60 127.77 1.23 2.94 16 12 C 0.09 2.47 5.14 86.38 0.44 2.91 16 13 C 0.08 2.90 3.48 30.59 0.11 3.01 16 14 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 15 O -0.56 -22.92 11.43 -145.01 -1.66 -24.58 16 16 C 0.12 4.82 5.33 86.38 0.46 5.28 16 17 N -0.61 -31.23 2.90 -726.95 -2.11 -33.34 16 18 C 0.18 8.89 8.99 127.77 1.15 10.04 16 19 C -0.24 -13.49 9.20 84.03 0.77 -12.72 16 20 H 0.07 3.79 7.55 -2.91 -0.02 3.76 16 21 C -0.06 -3.63 5.08 84.86 0.43 -3.20 16 22 N -0.94 -57.82 10.83 21.65 0.23 -57.59 16 23 Si 0.96 47.61 29.58 68.60 2.03 49.64 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 27 N -0.22 -5.51 8.80 -49.99 -0.44 -5.95 16 28 N -0.09 -2.00 13.65 37.02 0.51 -1.49 16 29 H 0.11 0.43 8.06 -2.91 -0.02 0.41 16 30 H 0.10 0.58 7.84 -2.91 -0.02 0.56 16 31 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 32 H 0.07 0.63 7.79 -2.39 -0.02 0.61 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.14 0.21 8.08 -2.39 -0.02 0.19 16 36 H 0.23 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.58 8.03 -2.39 -0.02 1.56 16 39 H 0.09 2.15 5.28 -2.39 -0.01 2.14 16 40 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16 41 H 0.08 2.34 7.38 -2.39 -0.02 2.32 16 42 H 0.37 14.29 8.55 -74.05 -0.63 13.66 16 43 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 44 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 45 H 0.01 0.42 7.34 -2.39 -0.02 0.40 16 46 H 0.01 0.37 7.41 -2.39 -0.02 0.36 16 47 H 0.03 1.41 8.04 -2.38 -0.02 1.39 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -77.73 401.12 3.58 -74.15 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.32 Total: 16.85 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 8.38 Total: 26.94 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -5.49 Total: -123.83 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.66 Total: -43.75 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -77.73 3.58 -74.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677174347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.208 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds