Wall clock time and date at job start Tue Mar 31 2020 21:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00288 * 2 1 4 4 H 1.08003 * 120.00010 * 202.67392 * 3 2 1 5 5 C 1.38811 * 119.99921 * 22.68497 * 3 2 1 6 6 N 1.31620 * 120.00329 * 11.49099 * 5 3 2 7 7 Si 1.86803 * 120.00124 * 191.49861 * 5 3 2 8 8 H 1.48498 * 109.47135 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47084 * 119.99672 * 7 5 3 10 10 H 1.48497 * 109.47248 * 239.99595 * 7 5 3 11 11 C 1.46499 * 119.99815 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47257 * 269.99963 * 11 2 1 13 13 H 1.08997 * 109.46806 * 305.00390 * 12 11 2 14 14 O 1.42900 * 109.46984 * 64.99715 * 12 11 2 15 15 C 1.52997 * 109.47481 * 184.99727 * 12 11 2 16 16 N 1.46504 * 109.47258 * 179.97438 * 15 12 11 17 17 C 1.46500 * 120.00107 * 270.00334 * 16 15 12 18 18 C 1.34778 * 119.99523 * 90.00443 * 16 15 12 19 19 O 1.21279 * 120.00389 * 359.97438 * 18 16 15 20 20 C 1.50703 * 119.99613 * 180.02562 * 18 16 15 21 21 H 1.09001 * 109.43249 * 59.94619 * 20 18 16 22 22 C 1.53171 * 109.44784 * 179.90431 * 20 18 16 23 23 C 1.53460 * 109.29345 * 189.47717 * 22 20 18 24 24 C 1.50798 * 108.13529 * 311.28870 * 23 22 20 25 25 N 1.29835 * 128.52198 * 195.91820 * 24 23 22 26 26 N 1.28911 * 109.48237 * 179.83139 * 25 24 23 27 27 C 1.30840 * 109.73607 * 0.02562 * 26 25 24 28 28 N 1.34699 * 107.07294 * 0.05247 * 27 26 25 29 29 C 1.46250 * 128.84927 * 179.83779 * 28 27 26 30 30 H 1.08996 * 109.47061 * 273.92763 * 1 2 3 31 31 H 1.09005 * 109.46676 * 33.92558 * 1 2 3 32 32 H 1.09000 * 109.47346 * 153.92519 * 1 2 3 33 33 H 0.96998 * 120.00566 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47591 * 150.00043 * 11 2 1 35 35 H 1.09004 * 109.47248 * 29.99607 * 11 2 1 36 36 H 0.96696 * 114.00345 * 60.00369 * 14 12 11 37 37 H 1.09002 * 109.46757 * 60.00210 * 15 12 11 38 38 H 1.08997 * 109.47641 * 300.00151 * 15 12 11 39 39 H 1.08997 * 109.46941 * 269.99401 * 17 16 15 40 40 H 1.08996 * 109.47280 * 30.00086 * 17 16 15 41 41 H 1.09002 * 109.46382 * 149.99843 * 17 16 15 42 42 H 1.09002 * 109.51452 * 69.52209 * 22 20 18 43 43 H 1.09005 * 109.52371 * 309.43367 * 22 20 18 44 44 H 1.08999 * 109.72915 * 191.62657 * 23 22 20 45 45 H 1.08997 * 109.76287 * 70.96887 * 23 22 20 46 46 H 1.08003 * 126.46433 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.59512 * 316.85697 * 29 28 27 48 48 H 1.08992 * 109.59654 * 77.31051 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1672 1.2219 -0.3606 5 6 1.5363 2.3415 0.4636 6 7 0.3913 2.2656 1.1083 7 14 2.3356 4.0046 0.1724 8 1 3.6081 3.8189 -0.5703 9 1 1.4192 4.8620 -0.6215 10 1 2.6152 4.6548 1.4778 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 2.9642 -0.9140 1.9811 14 8 1.2060 -1.9944 2.0805 15 6 3.3237 -2.9688 1.4430 16 7 3.5683 -3.3920 2.8241 17 6 4.7331 -2.8814 3.5513 18 6 2.7218 -4.2511 3.4256 19 8 1.7573 -4.6734 2.8238 20 6 2.9731 -4.6859 4.8465 21 1 2.9714 -3.8126 5.4987 22 6 1.8703 -5.6537 5.2863 23 6 1.9914 -5.9087 6.7947 24 6 3.4300 -6.2420 7.1004 25 7 3.9235 -6.7910 8.1684 26 7 5.2006 -6.9103 8.0397 27 6 5.5735 -6.4385 6.8776 28 7 4.4627 -6.0018 6.2532 29 6 4.3346 -5.3853 4.9332 30 1 -0.3633 0.0704 1.0252 31 1 -0.3633 0.8528 -0.5736 32 1 -0.3634 -0.9231 -0.4517 33 1 -0.0372 3.0731 1.4326 34 1 3.1500 -1.1383 -0.5143 35 1 1.6084 -2.0282 -0.5147 36 1 0.6954 -2.6956 1.6531 37 1 4.2745 -2.7526 0.9558 38 1 2.8120 -3.7659 0.9037 39 1 5.5820 -3.5459 3.3901 40 1 4.9789 -1.8833 3.1887 41 1 4.5049 -2.8352 4.6162 42 1 1.9766 -6.5957 4.7483 43 1 0.8951 -5.2182 5.0681 44 1 1.3516 -6.7441 7.0792 45 1 1.6959 -5.0151 7.3445 46 1 6.5817 -6.4052 6.4920 47 1 5.1308 -4.6542 4.7924 48 1 4.4005 -6.1536 4.1630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677185389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:06 Heat of formation + Delta-G solvation = 30.242510 kcal Electronic energy + Delta-G solvation = -30246.037569 eV Core-core repulsion = 26145.876521 eV Total energy + Delta-G solvation = -4100.161048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.61058 -40.52460 -37.72333 -36.81490 -35.61559 -34.58439 -33.93919 -31.76541 -31.29568 -29.91546 -29.16766 -27.29602 -26.17024 -25.72060 -24.93710 -23.54875 -22.59106 -21.96871 -20.58434 -20.29468 -19.26579 -17.64369 -17.62172 -16.92921 -16.57111 -16.23673 -16.03890 -15.43801 -15.07352 -14.92145 -14.78831 -14.62941 -14.43594 -14.39166 -13.86142 -13.68555 -13.30764 -13.15698 -12.87825 -12.58859 -12.53939 -12.23455 -11.90433 -11.81231 -11.65901 -11.55033 -11.39388 -11.15383 -10.90739 -10.75321 -10.64901 -10.48844 -10.46304 -10.31997 -10.04680 -10.00963 -9.92749 -9.67123 -9.46714 -8.69249 -8.47676 -6.71841 -5.73349 -3.19899 1.51166 2.02665 2.41458 2.60051 2.77625 3.33602 3.40402 3.42497 3.71336 3.91735 3.98828 4.06131 4.31153 4.45766 4.51123 4.59297 4.60708 4.75292 4.86353 4.93526 5.00152 5.07315 5.12617 5.20193 5.34106 5.37822 5.43588 5.46716 5.59052 5.61564 5.66565 5.73185 5.81055 5.85558 5.95212 6.03527 6.35590 6.49433 6.50280 6.74284 6.81529 7.18557 7.41911 7.74581 7.87993 7.98192 8.36657 8.39879 8.43674 9.21738 9.85241 10.34795 11.30654 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.002444 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.246555 B =11453.125811 C =11746.868646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.592 5.592 3 C -0.259 4.259 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.125 3.875 12 C 0.071 3.929 13 H 0.095 0.905 14 O -0.542 6.542 15 C 0.079 3.921 16 N -0.604 5.604 17 C 0.069 3.931 18 C 0.530 3.470 19 O -0.523 6.523 20 C -0.122 4.122 21 H 0.111 0.889 22 C -0.106 4.106 23 C -0.036 4.036 24 C 0.181 3.819 25 N -0.294 5.294 26 N -0.302 5.302 27 C 0.153 3.847 28 N -0.472 5.472 29 C 0.106 3.894 30 H 0.035 0.965 31 H 0.040 0.960 32 H -0.008 1.008 33 H 0.251 0.749 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.362 0.638 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.219 0.781 47 H 0.110 0.890 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 -16.531 5.850 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.314 5.314 3 C -0.389 4.389 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.544 5.544 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C -0.004 4.004 12 C 0.007 3.993 13 H 0.112 0.888 14 O -0.345 6.345 15 C -0.044 4.044 16 N -0.337 5.337 17 C -0.074 4.074 18 C 0.316 3.684 19 O -0.398 6.398 20 C -0.144 4.144 21 H 0.129 0.871 22 C -0.144 4.144 23 C -0.076 4.076 24 C -0.087 4.087 25 N -0.133 5.133 26 N -0.141 5.141 27 C -0.135 4.135 28 N -0.163 5.163 29 C -0.017 4.017 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.011 0.989 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.208 0.792 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.236 0.764 47 H 0.128 0.872 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.092 -16.744 7.321 20.412 hybrid contribution 0.599 1.351 -1.684 2.241 sum 9.691 -15.393 5.637 19.043 Atomic orbital electron populations 1.20770 0.82197 0.95034 0.99552 1.43846 1.02049 1.00131 1.85370 1.19205 0.98246 0.85488 1.35948 0.91515 1.25067 0.97743 0.98503 0.98256 1.70101 1.17992 1.26900 1.39454 0.86224 0.78634 0.84483 0.77393 1.20388 1.21592 1.21761 1.21445 0.96456 0.89422 0.93046 1.23248 0.84365 0.93606 0.98045 0.88758 1.86623 1.32229 1.59397 1.56299 1.22527 1.01385 0.99299 0.81172 1.47754 1.25958 1.45179 1.14799 1.22004 0.87616 1.00669 0.97131 1.19853 0.82708 0.78778 0.87102 1.90688 1.28067 1.55960 1.65128 1.21669 0.95083 1.00832 0.96809 0.87100 1.21563 0.99534 0.99492 0.93815 1.20317 0.86432 1.04123 0.96689 1.24924 0.93722 1.01590 0.88445 1.74089 1.02026 1.17343 1.19851 1.74496 1.04842 1.19527 1.15203 1.26280 0.93959 1.01146 0.92099 1.46168 1.07736 1.46000 1.16439 1.22259 0.99077 0.98634 0.81775 0.94707 0.94127 0.98907 0.93818 0.93275 0.94153 0.79215 0.89965 0.89874 0.92443 0.89967 0.91167 0.90413 0.88059 0.87628 0.88303 0.76445 0.87246 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 8.61 59.85 0.52 4.71 16 2 N -0.59 -14.49 2.89 -181.11 -0.52 -15.02 16 3 C -0.26 -6.92 9.67 -15.06 -0.15 -7.07 16 4 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.90 -26.25 10.62 55.49 0.59 -25.66 16 7 Si 0.90 21.43 29.57 -169.99 -5.03 16.41 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 C 0.13 2.36 5.37 -4.04 -0.02 2.34 16 12 C 0.07 1.20 3.48 -26.73 -0.09 1.11 16 13 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 14 O -0.54 -10.36 11.70 -43.99 -0.51 -10.88 16 15 C 0.08 0.96 5.15 -4.04 -0.02 0.94 16 16 N -0.60 -6.28 2.83 -181.57 -0.51 -6.79 16 17 C 0.07 0.49 8.79 59.85 0.53 1.01 16 18 C 0.53 5.88 6.57 -10.98 -0.07 5.81 16 19 O -0.52 -7.50 14.19 -3.20 -0.05 -7.55 16 20 C -0.12 -0.98 1.73 -91.52 -0.16 -1.14 16 21 H 0.11 0.87 7.37 -51.93 -0.38 0.49 16 22 C -0.11 -0.85 4.68 -26.40 -0.12 -0.97 16 23 C -0.04 -0.28 6.33 -27.60 -0.17 -0.45 16 24 C 0.18 1.86 7.75 -155.30 -1.20 0.65 16 25 N -0.29 -3.91 12.21 32.76 0.40 -3.51 16 26 N -0.30 -3.83 12.23 29.59 0.36 -3.47 16 27 C 0.15 1.31 12.83 -90.40 -1.16 0.15 16 28 N -0.47 -3.90 3.11 -115.53 -0.36 -4.26 16 29 C 0.11 0.64 5.81 -4.02 -0.02 0.61 16 30 H 0.03 0.95 7.43 -51.93 -0.39 0.57 16 31 H 0.04 1.08 7.20 -51.93 -0.37 0.71 16 32 H -0.01 -0.17 7.85 -51.93 -0.41 -0.57 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 36 H 0.36 6.29 8.45 45.56 0.38 6.68 16 37 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.08 1.03 7.42 -51.93 -0.39 0.65 16 39 H 0.06 0.25 7.18 -51.93 -0.37 -0.12 16 40 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 41 H 0.07 0.43 5.89 -51.93 -0.31 0.12 16 42 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.10 0.91 7.79 -51.93 -0.40 0.50 16 44 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.22 0.86 8.06 -52.48 -0.42 0.44 16 47 H 0.11 0.44 4.89 -51.93 -0.25 0.18 16 48 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -36.18 380.95 -8.77 -44.95 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.63 Total: 2.33 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -2.24 Total: 7.70 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.05 Total: -58.70 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.56 Total: -18.43 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.18 -8.77 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677185389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.191 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds