Wall clock time and date at job start Tue Mar 31 2020 21:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00288 * 2 1 4 4 H 1.08003 * 120.00010 * 202.67392 * 3 2 1 5 5 C 1.38811 * 119.99921 * 22.68497 * 3 2 1 6 6 N 1.31620 * 120.00329 * 11.49099 * 5 3 2 7 7 Si 1.86803 * 120.00124 * 191.49861 * 5 3 2 8 8 H 1.48498 * 109.47135 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47084 * 119.99672 * 7 5 3 10 10 H 1.48497 * 109.47248 * 239.99595 * 7 5 3 11 11 C 1.46499 * 119.99815 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47257 * 269.99963 * 11 2 1 13 13 H 1.08997 * 109.46806 * 305.00390 * 12 11 2 14 14 O 1.42900 * 109.46984 * 64.99715 * 12 11 2 15 15 C 1.52997 * 109.47481 * 184.99727 * 12 11 2 16 16 N 1.46504 * 109.47258 * 179.97438 * 15 12 11 17 17 C 1.46500 * 120.00107 * 270.00334 * 16 15 12 18 18 C 1.34778 * 119.99523 * 90.00443 * 16 15 12 19 19 O 1.21279 * 120.00389 * 359.97438 * 18 16 15 20 20 C 1.50703 * 119.99613 * 180.02562 * 18 16 15 21 21 H 1.09001 * 109.43249 * 59.94619 * 20 18 16 22 22 C 1.53171 * 109.44784 * 179.90431 * 20 18 16 23 23 C 1.53460 * 109.29345 * 189.47717 * 22 20 18 24 24 C 1.50798 * 108.13529 * 311.28870 * 23 22 20 25 25 N 1.29835 * 128.52198 * 195.91820 * 24 23 22 26 26 N 1.28911 * 109.48237 * 179.83139 * 25 24 23 27 27 C 1.30840 * 109.73607 * 0.02562 * 26 25 24 28 28 N 1.34699 * 107.07294 * 0.05247 * 27 26 25 29 29 C 1.46250 * 128.84927 * 179.83779 * 28 27 26 30 30 H 1.08996 * 109.47061 * 273.92763 * 1 2 3 31 31 H 1.09005 * 109.46676 * 33.92558 * 1 2 3 32 32 H 1.09000 * 109.47346 * 153.92519 * 1 2 3 33 33 H 0.96998 * 120.00566 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47591 * 150.00043 * 11 2 1 35 35 H 1.09004 * 109.47248 * 29.99607 * 11 2 1 36 36 H 0.96696 * 114.00345 * 60.00369 * 14 12 11 37 37 H 1.09002 * 109.46757 * 60.00210 * 15 12 11 38 38 H 1.08997 * 109.47641 * 300.00151 * 15 12 11 39 39 H 1.08997 * 109.46941 * 269.99401 * 17 16 15 40 40 H 1.08996 * 109.47280 * 30.00086 * 17 16 15 41 41 H 1.09002 * 109.46382 * 149.99843 * 17 16 15 42 42 H 1.09002 * 109.51452 * 69.52209 * 22 20 18 43 43 H 1.09005 * 109.52371 * 309.43367 * 22 20 18 44 44 H 1.08999 * 109.72915 * 191.62657 * 23 22 20 45 45 H 1.08997 * 109.76287 * 70.96887 * 23 22 20 46 46 H 1.08003 * 126.46433 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.59512 * 316.85697 * 29 28 27 48 48 H 1.08992 * 109.59654 * 77.31051 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1672 1.2219 -0.3606 5 6 1.5363 2.3415 0.4636 6 7 0.3913 2.2656 1.1083 7 14 2.3356 4.0046 0.1724 8 1 3.6081 3.8189 -0.5703 9 1 1.4192 4.8620 -0.6215 10 1 2.6152 4.6548 1.4778 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 2.9642 -0.9140 1.9811 14 8 1.2060 -1.9944 2.0805 15 6 3.3237 -2.9688 1.4430 16 7 3.5683 -3.3920 2.8241 17 6 4.7331 -2.8814 3.5513 18 6 2.7218 -4.2511 3.4256 19 8 1.7573 -4.6734 2.8238 20 6 2.9731 -4.6859 4.8465 21 1 2.9714 -3.8126 5.4987 22 6 1.8703 -5.6537 5.2863 23 6 1.9914 -5.9087 6.7947 24 6 3.4300 -6.2420 7.1004 25 7 3.9235 -6.7910 8.1684 26 7 5.2006 -6.9103 8.0397 27 6 5.5735 -6.4385 6.8776 28 7 4.4627 -6.0018 6.2532 29 6 4.3346 -5.3853 4.9332 30 1 -0.3633 0.0704 1.0252 31 1 -0.3633 0.8528 -0.5736 32 1 -0.3634 -0.9231 -0.4517 33 1 -0.0372 3.0731 1.4326 34 1 3.1500 -1.1383 -0.5143 35 1 1.6084 -2.0282 -0.5147 36 1 0.6954 -2.6956 1.6531 37 1 4.2745 -2.7526 0.9558 38 1 2.8120 -3.7659 0.9037 39 1 5.5820 -3.5459 3.3901 40 1 4.9789 -1.8833 3.1887 41 1 4.5049 -2.8352 4.6162 42 1 1.9766 -6.5957 4.7483 43 1 0.8951 -5.2182 5.0681 44 1 1.3516 -6.7441 7.0792 45 1 1.6959 -5.0151 7.3445 46 1 6.5817 -6.4052 6.4920 47 1 5.1308 -4.6542 4.7924 48 1 4.4005 -6.1536 4.1630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677185389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:04 Heat of formation + Delta-G solvation = 5.854287 kcal Electronic energy + Delta-G solvation = -30247.095122 eV Core-core repulsion = 26145.876521 eV Total energy + Delta-G solvation = -4101.218601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.31735 -41.36706 -38.95818 -37.73716 -36.82000 -36.10481 -34.61524 -33.28053 -32.47206 -31.04190 -30.06764 -28.16564 -27.82534 -27.15014 -25.70482 -24.49071 -23.35659 -23.27963 -22.19453 -21.06301 -20.02090 -18.78004 -18.38777 -18.27764 -17.65185 -17.22544 -16.87405 -16.58174 -16.43586 -16.15482 -15.89950 -15.48591 -15.38597 -15.17864 -15.06325 -14.85160 -14.65789 -14.42794 -13.84421 -13.62032 -13.28227 -13.24381 -13.07181 -12.94802 -12.80530 -12.66677 -12.57942 -12.50214 -12.25270 -12.11388 -12.03787 -12.01371 -11.94044 -11.75357 -11.37980 -11.20835 -11.09574 -10.84988 -10.58609 -10.22288 -9.58779 -8.67254 -7.79725 -5.27755 0.85969 1.38742 1.45538 1.47163 1.57077 1.61631 1.84412 2.00776 2.51623 3.08740 3.23485 3.32621 3.36408 3.49506 3.64782 3.77668 3.83044 3.94784 3.98884 4.10939 4.17206 4.21357 4.26318 4.28007 4.45708 4.50180 4.57191 4.60041 4.64282 4.73234 4.79907 4.87096 4.88505 4.95736 4.98553 5.01951 5.06880 5.19339 5.31996 5.35092 5.47619 5.65132 5.80550 5.90724 6.34498 6.38254 7.00965 7.15311 7.17003 7.69917 7.90161 8.34931 9.23660 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.002444 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.246555 B =11453.125811 C =11746.868646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.611 5.611 3 C -0.258 4.258 4 H 0.077 0.923 5 C -0.058 4.058 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.261 1.261 9 H -0.296 1.296 10 H -0.295 1.295 11 C 0.120 3.880 12 C 0.081 3.919 13 H 0.064 0.936 14 O -0.565 6.565 15 C 0.093 3.907 16 N -0.605 5.605 17 C 0.059 3.941 18 C 0.526 3.474 19 O -0.561 6.561 20 C -0.115 4.115 21 H 0.115 0.885 22 C -0.099 4.099 23 C -0.031 4.031 24 C 0.176 3.824 25 N -0.338 5.338 26 N -0.352 5.352 27 C 0.171 3.829 28 N -0.470 5.470 29 C 0.111 3.889 30 H 0.000 1.000 31 H 0.010 0.990 32 H 0.023 0.977 33 H 0.244 0.756 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.368 0.632 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.264 0.736 47 H 0.139 0.861 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.284 -17.327 4.955 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.334 5.334 3 C -0.389 4.389 4 H 0.095 0.905 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.185 1.185 9 H -0.223 1.223 10 H -0.223 1.223 11 C -0.007 4.007 12 C 0.018 3.982 13 H 0.082 0.918 14 O -0.370 6.370 15 C -0.030 4.030 16 N -0.337 5.337 17 C -0.083 4.083 18 C 0.313 3.687 19 O -0.439 6.439 20 C -0.137 4.137 21 H 0.133 0.867 22 C -0.138 4.138 23 C -0.070 4.070 24 C -0.093 4.093 25 N -0.177 5.177 26 N -0.191 5.191 27 C -0.117 4.117 28 N -0.160 5.160 29 C -0.011 4.011 30 H 0.019 0.981 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.215 0.785 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.279 0.721 47 H 0.157 0.843 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.026 -17.574 6.427 22.244 hybrid contribution -0.273 1.535 -1.464 2.139 sum 11.754 -16.040 4.963 20.495 Atomic orbital electron populations 1.20420 0.83074 0.95138 0.97187 1.44073 1.01980 1.01654 1.85672 1.19606 0.98446 0.86493 1.34311 0.90507 1.25850 0.98543 1.02018 0.98898 1.70292 1.19730 1.27110 1.41398 0.85200 0.78212 0.80138 0.76876 1.18464 1.22271 1.22260 1.21672 0.96916 0.87453 0.94649 1.22956 0.84332 0.95293 0.95597 0.91803 1.86592 1.33503 1.59908 1.56995 1.22206 1.01609 0.96515 0.82711 1.47812 1.26780 1.44737 1.14357 1.22304 0.87450 1.01173 0.97324 1.20314 0.82045 0.78424 0.87876 1.90673 1.29611 1.57423 1.66184 1.21582 0.96338 1.01089 0.94681 0.86739 1.21464 0.99111 0.99284 0.93914 1.20346 0.85527 1.04719 0.96401 1.25216 0.94802 1.00997 0.88296 1.73989 1.02807 1.19174 1.21751 1.74395 1.04891 1.22024 1.17744 1.27094 0.95396 0.98502 0.90699 1.46281 1.07188 1.45735 1.16823 1.22400 0.98486 0.99366 0.80830 0.98121 0.97075 0.95864 0.94663 0.91465 0.92386 0.78520 0.87032 0.89863 0.88561 0.90709 0.90121 0.90720 0.89320 0.86964 0.87598 0.72061 0.84337 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.45 8.61 127.77 1.10 10.55 16 2 N -0.61 -29.71 2.89 -726.92 -2.10 -31.81 16 3 C -0.26 -13.68 9.67 84.03 0.81 -12.87 16 4 H 0.08 3.84 7.85 -2.91 -0.02 3.81 16 5 C -0.06 -3.24 5.12 84.86 0.43 -2.81 16 6 N -0.94 -56.35 10.62 21.65 0.23 -56.12 16 7 Si 0.97 44.34 29.57 68.60 2.03 46.37 16 8 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 9 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 11 C 0.12 4.31 5.37 86.38 0.46 4.77 16 12 C 0.08 2.64 3.48 30.59 0.11 2.74 16 13 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 14 O -0.57 -21.56 11.70 -140.60 -1.65 -23.20 16 15 C 0.09 2.00 5.15 86.38 0.44 2.44 16 16 N -0.61 -10.84 2.83 -846.76 -2.39 -13.23 16 17 C 0.06 0.60 8.79 127.77 1.12 1.73 16 18 C 0.53 10.62 6.57 87.66 0.58 11.20 16 19 O -0.56 -15.53 14.19 5.35 0.08 -15.46 16 20 C -0.12 -1.59 1.73 -11.38 -0.02 -1.61 16 21 H 0.11 1.54 7.37 -2.39 -0.02 1.52 16 22 C -0.10 -1.50 4.68 30.81 0.14 -1.35 16 23 C -0.03 -0.44 6.33 30.03 0.19 -0.25 16 24 C 0.18 3.41 7.75 138.14 1.07 4.48 16 25 N -0.34 -8.91 12.21 -50.28 -0.61 -9.52 16 26 N -0.35 -8.61 12.23 -60.31 -0.74 -9.35 16 27 C 0.17 2.45 12.83 180.27 2.31 4.76 16 28 N -0.47 -6.48 3.11 -519.43 -1.62 -8.10 16 29 C 0.11 0.93 5.81 86.53 0.50 1.43 16 30 H 0.00 0.03 7.43 -2.39 -0.02 0.01 16 31 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 32 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 33 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 35 H 0.06 1.88 7.87 -2.38 -0.02 1.86 16 36 H 0.37 12.76 8.45 -74.06 -0.63 12.13 16 37 H 0.11 1.76 8.07 -2.39 -0.02 1.74 16 38 H 0.08 1.84 7.42 -2.39 -0.02 1.83 16 39 H 0.10 0.28 7.18 -2.39 -0.02 0.26 16 40 H 0.07 0.93 8.07 -2.39 -0.02 0.91 16 41 H 0.08 0.67 5.89 -2.39 -0.01 0.66 16 42 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 43 H 0.09 1.58 7.79 -2.38 -0.02 1.56 16 44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.26 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.14 0.37 4.89 -2.38 -0.01 0.36 16 48 H 0.11 0.76 8.12 -2.39 -0.02 0.74 16 Total: -1.00 -82.40 380.95 2.84 -79.56 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.35 Total: 15.65 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 9.26 Total: 25.21 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -7.23 Total: -128.12 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.57 Total: -38.66 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -82.40 2.84 -79.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677185389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.413 kcal (2) G-P(sol) polarization free energy of solvation -82.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds