Wall clock time and date at job start Tue Mar 31 2020 21:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36933 * 119.99754 * 2 1 4 4 H 1.07998 * 120.00028 * 203.18837 * 3 2 1 5 5 C 1.38812 * 120.00028 * 23.18971 * 3 2 1 6 6 N 1.31621 * 120.00387 * 13.70904 * 5 3 2 7 7 Si 1.86804 * 120.00039 * 193.70665 * 5 3 2 8 8 H 1.48498 * 109.46939 * 90.00288 * 7 5 3 9 9 H 1.48498 * 109.47422 * 210.00138 * 7 5 3 10 10 H 1.48496 * 109.47115 * 330.00379 * 7 5 3 11 11 C 1.46493 * 119.99964 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47084 * 90.00181 * 11 2 1 13 13 H 1.08998 * 109.47119 * 59.99686 * 12 11 2 14 14 O 1.42898 * 109.46866 * 299.99431 * 12 11 2 15 15 C 1.53006 * 109.47152 * 179.97438 * 12 11 2 16 16 N 1.46498 * 109.46864 * 184.99819 * 15 12 11 17 17 C 1.46502 * 120.00016 * 269.99515 * 16 15 12 18 18 C 1.34773 * 119.99912 * 90.00519 * 16 15 12 19 19 O 1.21277 * 120.00222 * 359.97438 * 18 16 15 20 20 C 1.50709 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.08995 * 109.45266 * 59.95169 * 20 18 16 22 22 C 1.53145 * 109.44983 * 179.88352 * 20 18 16 23 23 C 1.53462 * 109.29617 * 189.46527 * 22 20 18 24 24 C 1.50804 * 108.13787 * 311.28160 * 23 22 20 25 25 N 1.29831 * 128.52512 * 195.93262 * 24 23 22 26 26 N 1.28912 * 109.48008 * 179.86478 * 25 24 23 27 27 C 1.30844 * 109.73471 * 0.02643 * 26 25 24 28 28 N 1.34685 * 107.07325 * 0.03381 * 27 26 25 29 29 C 1.46261 * 128.84500 * 179.86754 * 28 27 26 30 30 H 1.09005 * 109.46924 * 275.15593 * 1 2 3 31 31 H 1.08995 * 109.47152 * 35.15330 * 1 2 3 32 32 H 1.08999 * 109.46943 * 155.16039 * 1 2 3 33 33 H 0.96995 * 120.00637 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47399 * 330.00038 * 11 2 1 35 35 H 1.09001 * 109.47340 * 209.99722 * 11 2 1 36 36 H 0.96693 * 114.00672 * 300.00308 * 14 12 11 37 37 H 1.08997 * 109.46626 * 65.00145 * 15 12 11 38 38 H 1.08996 * 109.47154 * 304.99829 * 15 12 11 39 39 H 1.08997 * 109.47396 * 270.00636 * 17 16 15 40 40 H 1.09006 * 109.46812 * 30.01086 * 17 16 15 41 41 H 1.09006 * 109.47086 * 150.00099 * 17 16 15 42 42 H 1.08995 * 109.49945 * 309.41240 * 22 20 18 43 43 H 1.09000 * 109.49898 * 69.48350 * 22 20 18 44 44 H 1.09000 * 109.73129 * 70.94266 * 23 22 20 45 45 H 1.09010 * 109.72551 * 191.57422 * 23 22 20 46 46 H 1.08006 * 126.45817 * 180.02562 * 27 26 25 47 47 H 1.08993 * 109.59652 * 316.86057 * 29 28 27 48 48 H 1.09001 * 109.58950 * 77.32145 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1642 1.2237 -0.3683 5 6 1.5397 2.3395 0.4734 6 7 0.4224 2.2572 1.1642 7 14 2.3046 4.0088 0.1301 8 1 1.7677 4.5463 -1.1458 9 1 1.9753 4.9415 1.2377 10 1 3.7790 3.8656 0.0254 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 1 3.0416 -0.9498 -1.9567 14 8 1.2039 -1.8803 -2.1169 15 6 3.2181 -3.0344 -1.4439 16 7 3.5665 -3.3964 -2.8200 17 6 2.6464 -4.2099 -3.6188 18 6 4.7335 -2.9813 -3.3512 19 8 5.4951 -2.3076 -2.6901 20 6 5.0921 -3.3541 -4.7667 21 1 4.3373 -2.9614 -5.4478 22 6 6.4576 -2.7580 -5.1207 23 6 6.7137 -2.9342 -6.6235 24 6 6.4193 -4.3684 -6.9849 25 7 6.7605 -5.0190 -8.0554 26 7 6.3184 -6.2277 -7.9830 27 6 5.6736 -6.3957 -6.8570 28 7 5.7196 -5.2229 -6.1962 29 6 5.1495 -4.8810 -4.8934 30 1 -0.3633 0.0924 1.0236 31 1 -0.3633 0.8402 -0.5917 32 1 -0.3633 -0.9326 -0.4317 33 1 -0.0037 3.0632 1.4953 34 1 1.6085 -2.0286 0.5129 35 1 3.1500 -1.1386 0.5133 36 1 0.6268 -2.5432 -1.7138 37 1 2.5935 -3.8151 -1.0098 38 1 4.1288 -2.9280 -0.8546 39 1 2.8772 -5.2655 -3.4760 40 1 1.6215 -4.0158 -3.3021 41 1 2.7558 -3.9533 -4.6725 42 1 6.4668 -1.6968 -4.8720 43 1 7.2361 -3.2709 -4.5559 44 1 6.0592 -2.2705 -7.1886 45 1 7.7549 -2.7034 -6.8489 46 1 5.1947 -7.3035 -6.5209 47 1 4.1432 -5.2923 -4.8155 48 1 5.7766 -5.2902 -4.1013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677185390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:12 Heat of formation + Delta-G solvation = 29.607615 kcal Electronic energy + Delta-G solvation = -30058.328818 eV Core-core repulsion = 25958.140239 eV Total energy + Delta-G solvation = -4100.188579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.65214 -40.62124 -37.91073 -36.98989 -35.65474 -34.63445 -33.98163 -31.89489 -31.31669 -30.01444 -29.26764 -27.26536 -26.25697 -25.71249 -24.98728 -23.59147 -22.63165 -22.10755 -20.67957 -20.37543 -19.33292 -17.71603 -17.67592 -16.92646 -16.53489 -16.35564 -16.13161 -15.58014 -15.10286 -15.01337 -14.84201 -14.78013 -14.59556 -14.48025 -13.86147 -13.69126 -13.33398 -13.15563 -12.97904 -12.68283 -12.63983 -12.30304 -11.95556 -11.92155 -11.72705 -11.56626 -11.44552 -11.18487 -10.90185 -10.72674 -10.68855 -10.62935 -10.51487 -10.42177 -10.21711 -10.00497 -9.88912 -9.82024 -9.50593 -8.79793 -8.46171 -6.70381 -5.72020 -3.18981 1.47249 1.96699 2.31385 2.56249 2.68085 3.39136 3.45435 3.46871 3.65688 3.86066 3.92714 4.00414 4.26724 4.45159 4.48641 4.53587 4.55466 4.67882 4.76850 4.83896 4.89672 5.01113 5.08256 5.11202 5.20065 5.30808 5.39480 5.42910 5.54056 5.56694 5.68273 5.69731 5.80093 5.80711 5.82250 5.93935 6.28288 6.45785 6.54596 6.66270 6.78327 7.07369 7.40169 7.71393 7.81512 7.86825 8.05428 8.39857 8.39995 9.23762 9.86539 10.34810 11.32026 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.002477 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.548009 B =11302.654373 C =12193.326173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.126 3.874 12 C 0.070 3.930 13 H 0.097 0.903 14 O -0.549 6.549 15 C 0.083 3.917 16 N -0.604 5.604 17 C 0.073 3.927 18 C 0.520 3.480 19 O -0.521 6.521 20 C -0.122 4.122 21 H 0.112 0.888 22 C -0.108 4.108 23 C -0.036 4.036 24 C 0.181 3.819 25 N -0.293 5.293 26 N -0.301 5.301 27 C 0.153 3.847 28 N -0.472 5.472 29 C 0.106 3.894 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.000 1.000 33 H 0.252 0.748 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.357 0.643 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.219 0.781 47 H 0.110 0.890 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -18.899 -10.913 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.313 5.313 3 C -0.385 4.385 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.003 4.003 12 C 0.007 3.993 13 H 0.115 0.885 14 O -0.353 6.353 15 C -0.040 4.040 16 N -0.336 5.336 17 C -0.070 4.070 18 C 0.305 3.695 19 O -0.396 6.396 20 C -0.144 4.144 21 H 0.130 0.870 22 C -0.146 4.146 23 C -0.075 4.075 24 C -0.087 4.087 25 N -0.132 5.132 26 N -0.140 5.140 27 C -0.134 4.134 28 N -0.164 5.164 29 C -0.017 4.017 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.203 0.797 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.236 0.764 47 H 0.128 0.872 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.135 -18.252 -12.180 23.074 hybrid contribution -0.703 0.584 1.487 1.746 sum 6.432 -17.668 -10.692 21.630 Atomic orbital electron populations 1.20739 0.82390 0.95578 0.98816 1.43700 1.01870 1.00171 1.85579 1.19170 0.98331 0.85712 1.35251 0.91597 1.25000 0.97974 0.98521 0.98076 1.70069 1.20085 1.27204 1.37847 0.86263 0.78818 0.84126 0.77422 1.21497 1.21742 1.20414 1.21272 0.97045 0.89530 0.92446 1.23298 0.84110 0.94196 0.97718 0.88479 1.86650 1.29194 1.63298 1.56135 1.22420 1.01648 0.98441 0.81533 1.47781 1.18554 1.52500 1.14793 1.22008 0.95323 0.93880 0.95829 1.20039 0.81370 0.80330 0.87720 1.90773 1.49889 1.37528 1.61411 1.21669 1.01498 0.94471 0.96731 0.87032 1.21579 0.94532 1.04171 0.94323 1.20312 1.04684 0.86255 0.96270 1.24916 0.97450 0.96684 0.89653 1.74093 1.20668 0.99644 1.18842 1.74503 1.12792 1.10239 1.16503 1.26281 1.03966 0.91464 0.91735 1.46164 1.41470 1.10907 1.17827 1.22249 1.01198 0.95789 0.82438 0.95517 0.94384 0.98167 0.93788 0.94384 0.92563 0.79730 0.90380 0.88934 0.92708 0.89620 0.91269 0.88108 0.90272 0.88308 0.87561 0.76423 0.87203 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.09 8.66 59.85 0.52 4.61 16 2 N -0.59 -14.56 2.84 -181.12 -0.51 -15.08 16 3 C -0.26 -7.06 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.82 7.87 -52.49 -0.41 1.40 16 5 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 6 N -0.91 -26.60 10.76 55.49 0.60 -26.00 16 7 Si 0.90 22.20 29.58 -169.99 -5.03 17.17 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.13 2.38 5.34 -4.04 -0.02 2.36 16 12 C 0.07 1.10 3.48 -26.73 -0.09 1.01 16 13 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 14 O -0.55 -8.38 10.97 -35.23 -0.39 -8.77 16 15 C 0.08 0.94 5.07 -4.04 -0.02 0.92 16 16 N -0.60 -5.79 2.84 -181.57 -0.52 -6.30 16 17 C 0.07 0.43 8.60 59.85 0.51 0.94 16 18 C 0.52 5.64 7.06 -10.98 -0.08 5.56 16 19 O -0.52 -7.87 15.41 5.56 0.09 -7.78 16 20 C -0.12 -0.91 1.73 -91.53 -0.16 -1.07 16 21 H 0.11 0.77 7.37 -51.93 -0.38 0.39 16 22 C -0.11 -0.84 4.68 -26.42 -0.12 -0.96 16 23 C -0.04 -0.26 6.33 -27.59 -0.17 -0.44 16 24 C 0.18 1.78 7.75 -155.31 -1.20 0.58 16 25 N -0.29 -3.79 12.21 32.76 0.40 -3.39 16 26 N -0.30 -3.70 12.23 29.59 0.36 -3.34 16 27 C 0.15 1.24 12.83 -90.41 -1.16 0.08 16 28 N -0.47 -3.68 3.11 -115.52 -0.36 -4.04 16 29 C 0.11 0.59 5.81 -4.01 -0.02 0.56 16 30 H 0.03 0.70 7.33 -51.93 -0.38 0.32 16 31 H 0.04 1.01 7.37 -51.93 -0.38 0.63 16 32 H 0.00 0.00 7.00 -51.93 -0.36 -0.37 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 36 H 0.36 4.11 8.79 45.56 0.40 4.51 16 37 H 0.08 0.67 8.07 -51.93 -0.42 0.26 16 38 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16 39 H 0.05 0.19 7.17 -51.93 -0.37 -0.19 16 40 H 0.09 0.54 7.11 -51.93 -0.37 0.17 16 41 H 0.07 0.35 5.90 -51.93 -0.31 0.04 16 42 H 0.10 0.88 7.79 -51.93 -0.40 0.48 16 43 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.11 0.69 8.14 -51.92 -0.42 0.26 16 46 H 0.22 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.11 0.36 4.89 -51.93 -0.25 0.11 16 48 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -37.32 380.58 -8.42 -45.74 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.54 Total: -0.89 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -2.26 Total: 6.94 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.03 Total: -58.15 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.30 Total: -16.55 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.32 -8.42 -45.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677185390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.344 kcal (2) G-P(sol) polarization free energy of solvation -37.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds