Wall clock time and date at job start Tue Mar 31 2020 21:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36933 * 119.99754 * 2 1 4 4 H 1.07998 * 120.00028 * 203.18837 * 3 2 1 5 5 C 1.38812 * 120.00028 * 23.18971 * 3 2 1 6 6 N 1.31621 * 120.00387 * 13.70904 * 5 3 2 7 7 Si 1.86804 * 120.00039 * 193.70665 * 5 3 2 8 8 H 1.48498 * 109.46939 * 90.00288 * 7 5 3 9 9 H 1.48498 * 109.47422 * 210.00138 * 7 5 3 10 10 H 1.48496 * 109.47115 * 330.00379 * 7 5 3 11 11 C 1.46493 * 119.99964 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47084 * 90.00181 * 11 2 1 13 13 H 1.08998 * 109.47119 * 59.99686 * 12 11 2 14 14 O 1.42898 * 109.46866 * 299.99431 * 12 11 2 15 15 C 1.53006 * 109.47152 * 179.97438 * 12 11 2 16 16 N 1.46498 * 109.46864 * 184.99819 * 15 12 11 17 17 C 1.46502 * 120.00016 * 269.99515 * 16 15 12 18 18 C 1.34773 * 119.99912 * 90.00519 * 16 15 12 19 19 O 1.21277 * 120.00222 * 359.97438 * 18 16 15 20 20 C 1.50709 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.08995 * 109.45266 * 59.95169 * 20 18 16 22 22 C 1.53145 * 109.44983 * 179.88352 * 20 18 16 23 23 C 1.53462 * 109.29617 * 189.46527 * 22 20 18 24 24 C 1.50804 * 108.13787 * 311.28160 * 23 22 20 25 25 N 1.29831 * 128.52512 * 195.93262 * 24 23 22 26 26 N 1.28912 * 109.48008 * 179.86478 * 25 24 23 27 27 C 1.30844 * 109.73471 * 0.02643 * 26 25 24 28 28 N 1.34685 * 107.07325 * 0.03381 * 27 26 25 29 29 C 1.46261 * 128.84500 * 179.86754 * 28 27 26 30 30 H 1.09005 * 109.46924 * 275.15593 * 1 2 3 31 31 H 1.08995 * 109.47152 * 35.15330 * 1 2 3 32 32 H 1.08999 * 109.46943 * 155.16039 * 1 2 3 33 33 H 0.96995 * 120.00637 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47399 * 330.00038 * 11 2 1 35 35 H 1.09001 * 109.47340 * 209.99722 * 11 2 1 36 36 H 0.96693 * 114.00672 * 300.00308 * 14 12 11 37 37 H 1.08997 * 109.46626 * 65.00145 * 15 12 11 38 38 H 1.08996 * 109.47154 * 304.99829 * 15 12 11 39 39 H 1.08997 * 109.47396 * 270.00636 * 17 16 15 40 40 H 1.09006 * 109.46812 * 30.01086 * 17 16 15 41 41 H 1.09006 * 109.47086 * 150.00099 * 17 16 15 42 42 H 1.08995 * 109.49945 * 309.41240 * 22 20 18 43 43 H 1.09000 * 109.49898 * 69.48350 * 22 20 18 44 44 H 1.09000 * 109.73129 * 70.94266 * 23 22 20 45 45 H 1.09010 * 109.72551 * 191.57422 * 23 22 20 46 46 H 1.08006 * 126.45817 * 180.02562 * 27 26 25 47 47 H 1.08993 * 109.59652 * 316.86057 * 29 28 27 48 48 H 1.09001 * 109.58950 * 77.32145 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1642 1.2237 -0.3683 5 6 1.5397 2.3395 0.4734 6 7 0.4224 2.2572 1.1642 7 14 2.3046 4.0088 0.1301 8 1 1.7677 4.5463 -1.1458 9 1 1.9753 4.9415 1.2377 10 1 3.7790 3.8656 0.0254 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 1 3.0416 -0.9498 -1.9567 14 8 1.2039 -1.8803 -2.1169 15 6 3.2181 -3.0344 -1.4439 16 7 3.5665 -3.3964 -2.8200 17 6 2.6464 -4.2099 -3.6188 18 6 4.7335 -2.9813 -3.3512 19 8 5.4951 -2.3076 -2.6901 20 6 5.0921 -3.3541 -4.7667 21 1 4.3373 -2.9614 -5.4478 22 6 6.4576 -2.7580 -5.1207 23 6 6.7137 -2.9342 -6.6235 24 6 6.4193 -4.3684 -6.9849 25 7 6.7605 -5.0190 -8.0554 26 7 6.3184 -6.2277 -7.9830 27 6 5.6736 -6.3957 -6.8570 28 7 5.7196 -5.2229 -6.1962 29 6 5.1495 -4.8810 -4.8934 30 1 -0.3633 0.0924 1.0236 31 1 -0.3633 0.8402 -0.5917 32 1 -0.3633 -0.9326 -0.4317 33 1 -0.0037 3.0632 1.4953 34 1 1.6085 -2.0286 0.5129 35 1 3.1500 -1.1386 0.5133 36 1 0.6268 -2.5432 -1.7138 37 1 2.5935 -3.8151 -1.0098 38 1 4.1288 -2.9280 -0.8546 39 1 2.8772 -5.2655 -3.4760 40 1 1.6215 -4.0158 -3.3021 41 1 2.7558 -3.9533 -4.6725 42 1 6.4668 -1.6968 -4.8720 43 1 7.2361 -3.2709 -4.5559 44 1 6.0592 -2.2705 -7.1886 45 1 7.7549 -2.7034 -6.8489 46 1 5.1947 -7.3035 -6.5209 47 1 4.1432 -5.2923 -4.8155 48 1 5.7766 -5.2902 -4.1013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677185390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:10 Heat of formation + Delta-G solvation = 3.290995 kcal Electronic energy + Delta-G solvation = -30059.469992 eV Core-core repulsion = 25958.140239 eV Total energy + Delta-G solvation = -4101.329753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.32264 -41.43364 -39.09879 -37.80964 -36.91075 -36.03518 -34.62830 -33.33425 -32.52262 -31.11530 -30.09401 -28.10943 -27.81257 -27.20614 -25.69430 -24.51713 -23.41458 -23.29266 -22.29356 -21.09743 -20.05847 -18.83740 -18.35081 -18.29154 -17.60275 -17.22776 -16.91249 -16.74285 -16.52621 -16.21527 -15.94316 -15.48613 -15.42632 -15.24381 -15.08142 -14.77799 -14.64391 -14.54696 -13.90124 -13.69642 -13.33056 -13.19407 -13.04555 -12.97806 -12.84284 -12.67502 -12.61417 -12.48838 -12.28016 -12.21158 -12.06525 -12.04467 -11.97632 -11.81420 -11.38601 -11.32238 -11.10516 -10.93224 -10.62805 -10.22597 -9.61843 -8.67826 -7.83534 -5.32303 0.85767 1.33579 1.41834 1.43370 1.51841 1.56593 1.84320 1.95334 2.48265 3.06522 3.21337 3.27141 3.33429 3.47098 3.56269 3.72974 3.82375 3.91723 3.96881 4.10101 4.13686 4.20014 4.21258 4.28903 4.45207 4.48814 4.53717 4.55752 4.66996 4.72812 4.82293 4.89913 4.92657 4.94145 4.98410 5.04297 5.04810 5.18400 5.23896 5.39956 5.49770 5.60498 5.73607 5.90504 6.31323 6.32949 7.03074 7.07747 7.15173 7.69929 7.88975 8.29359 9.17163 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.002477 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.548009 B =11302.654373 C =12193.326173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.611 5.611 3 C -0.260 4.260 4 H 0.058 0.942 5 C -0.052 4.052 6 N -0.935 5.935 7 Si 0.962 3.038 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.272 1.272 11 C 0.121 3.879 12 C 0.092 3.908 13 H 0.049 0.951 14 O -0.560 6.560 15 C 0.094 3.906 16 N -0.601 5.601 17 C 0.062 3.938 18 C 0.516 3.484 19 O -0.573 6.573 20 C -0.113 4.113 21 H 0.122 0.878 22 C -0.103 4.103 23 C -0.030 4.030 24 C 0.176 3.824 25 N -0.338 5.338 26 N -0.353 5.353 27 C 0.173 3.827 28 N -0.469 5.469 29 C 0.112 3.888 30 H 0.000 1.000 31 H 0.002 0.998 32 H 0.043 0.957 33 H 0.248 0.752 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.379 0.621 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.265 0.735 47 H 0.143 0.857 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -21.569 -11.352 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.334 5.334 3 C -0.391 4.391 4 H 0.076 0.924 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.790 3.210 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.197 1.197 11 C -0.006 4.006 12 C 0.029 3.971 13 H 0.067 0.933 14 O -0.366 6.366 15 C -0.030 4.030 16 N -0.332 5.332 17 C -0.080 4.080 18 C 0.303 3.697 19 O -0.452 6.452 20 C -0.135 4.135 21 H 0.140 0.860 22 C -0.141 4.141 23 C -0.069 4.069 24 C -0.093 4.093 25 N -0.177 5.177 26 N -0.191 5.191 27 C -0.116 4.116 28 N -0.160 5.160 29 C -0.010 4.010 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.227 0.773 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.280 0.720 47 H 0.161 0.839 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.334 -20.992 -12.648 25.313 hybrid contribution -0.489 1.325 1.637 2.162 sum 5.845 -19.668 -11.012 23.286 Atomic orbital electron populations 1.20470 0.82382 0.96204 0.96880 1.43936 1.02240 1.01297 1.85935 1.19391 0.98176 0.87407 1.34131 0.92421 1.25701 0.98804 1.01605 0.98621 1.70208 1.21311 1.27540 1.39159 0.85347 0.78330 0.80349 0.76960 1.21493 1.21673 1.19697 1.21531 0.96333 0.87961 0.94798 1.22695 0.84601 0.95501 0.94314 0.93282 1.86610 1.29316 1.64486 1.56219 1.22148 1.00906 0.96988 0.82939 1.47844 1.18698 1.52217 1.14402 1.22352 0.94507 0.95270 0.95823 1.20571 0.81217 0.79393 0.88524 1.90756 1.51673 1.39891 1.62900 1.21578 1.01213 0.96210 0.94500 0.86021 1.21483 0.94890 1.03274 0.94500 1.20330 1.05295 0.85445 0.95817 1.25186 0.97263 0.97431 0.89460 1.73992 1.22411 1.00520 1.20767 1.74402 1.15131 1.10452 1.19096 1.27105 1.01820 0.92434 0.90197 1.46273 1.41003 1.10543 1.18201 1.22399 1.03056 0.94075 0.81465 0.98145 0.97937 0.93817 0.94268 0.91213 0.93824 0.77323 0.86275 0.90497 0.88943 0.89445 0.90181 0.89541 0.90968 0.87313 0.87107 0.71967 0.83920 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 8.93 8.66 127.77 1.11 10.04 16 2 N -0.61 -30.14 2.84 -726.94 -2.07 -32.21 16 3 C -0.26 -14.68 9.65 84.03 0.81 -13.87 16 4 H 0.06 3.27 7.87 -2.91 -0.02 3.25 16 5 C -0.05 -3.00 5.09 84.86 0.43 -2.56 16 6 N -0.94 -56.06 10.76 21.65 0.23 -55.82 16 7 Si 0.96 46.51 29.58 68.60 2.03 48.54 16 8 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 C 0.12 4.43 5.34 86.38 0.46 4.89 16 12 C 0.09 2.77 3.48 30.60 0.11 2.88 16 13 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 14 O -0.56 -15.53 10.97 -148.98 -1.63 -17.17 16 15 C 0.09 1.88 5.07 86.38 0.44 2.32 16 16 N -0.60 -9.68 2.84 -846.74 -2.40 -12.08 16 17 C 0.06 0.42 8.60 127.77 1.10 1.52 16 18 C 0.52 10.38 7.06 87.66 0.62 11.00 16 19 O -0.57 -17.47 15.41 -3.02 -0.05 -17.52 16 20 C -0.11 -1.45 1.73 -11.38 -0.02 -1.47 16 21 H 0.12 1.35 7.37 -2.39 -0.02 1.33 16 22 C -0.10 -1.55 4.68 30.80 0.14 -1.40 16 23 C -0.03 -0.41 6.33 30.04 0.19 -0.22 16 24 C 0.18 3.25 7.75 138.14 1.07 4.32 16 25 N -0.34 -8.62 12.21 -50.28 -0.61 -9.23 16 26 N -0.35 -8.28 12.23 -60.31 -0.74 -9.02 16 27 C 0.17 2.28 12.83 180.28 2.31 4.59 16 28 N -0.47 -5.97 3.11 -519.39 -1.62 -7.59 16 29 C 0.11 0.81 5.81 86.53 0.50 1.31 16 30 H 0.00 0.02 7.33 -2.38 -0.02 0.00 16 31 H 0.00 0.10 7.37 -2.39 -0.02 0.08 16 32 H 0.04 1.67 7.00 -2.39 -0.02 1.66 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 35 H 0.04 1.69 8.04 -2.39 -0.02 1.68 16 36 H 0.38 7.02 8.79 -74.06 -0.65 6.37 16 37 H 0.12 1.45 8.07 -2.39 -0.02 1.44 16 38 H 0.08 1.84 7.42 -2.39 -0.02 1.83 16 39 H 0.09 0.01 7.17 -2.39 -0.02 -0.01 16 40 H 0.09 0.65 7.11 -2.38 -0.02 0.63 16 41 H 0.08 0.41 5.90 -2.38 -0.01 0.40 16 42 H 0.09 1.56 7.79 -2.39 -0.02 1.54 16 43 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.26 0.54 8.06 -2.91 -0.02 0.52 16 47 H 0.14 0.11 4.89 -2.39 -0.01 0.10 16 48 H 0.10 0.68 8.12 -2.39 -0.02 0.66 16 Total: -1.00 -86.81 380.58 2.75 -84.06 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.33 Total: 4.71 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 9.27 Total: 23.33 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -7.20 Total: -125.95 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.68 Total: -34.69 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -86.81 2.75 -84.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677185390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.349 kcal (2) G-P(sol) polarization free energy of solvation -86.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds