Wall clock time and date at job start Tue Mar 31 2020 21:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 119.99947 * 2 1 4 4 H 1.07998 * 120.00284 * 159.86270 * 3 2 1 5 5 C 1.38812 * 120.00244 * 339.86514 * 3 2 1 6 6 N 1.31625 * 119.99646 * 347.47878 * 5 3 2 7 7 Si 1.86800 * 120.00410 * 167.47946 * 5 3 2 8 8 H 1.48501 * 109.47050 * 180.02562 * 7 5 3 9 9 H 1.48504 * 109.46894 * 299.99644 * 7 5 3 10 10 H 1.48502 * 109.47042 * 60.00017 * 7 5 3 11 11 C 1.46503 * 120.00135 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.46915 * 269.99781 * 11 2 1 13 13 H 1.09000 * 109.47324 * 304.99794 * 12 11 2 14 14 O 1.42898 * 109.47331 * 65.00338 * 12 11 2 15 15 C 1.53009 * 109.46983 * 184.99783 * 12 11 2 16 16 N 1.46497 * 109.47313 * 179.97438 * 15 12 11 17 17 C 1.46506 * 119.99545 * 89.99863 * 16 15 12 18 18 C 1.34771 * 120.00404 * 270.00480 * 16 15 12 19 19 O 1.21281 * 119.99738 * 359.97438 * 18 16 15 20 20 C 1.50703 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.09001 * 109.45010 * 299.95359 * 20 18 16 22 22 C 1.53141 * 109.45031 * 179.97438 * 20 18 16 23 23 C 1.53466 * 109.30312 * 170.53637 * 22 20 18 24 24 C 1.50799 * 108.13306 * 48.70862 * 23 22 20 25 25 N 1.29842 * 128.52071 * 164.11143 * 24 23 22 26 26 N 1.28910 * 109.47817 * 180.09506 * 25 24 23 27 27 C 1.30839 * 109.74065 * 359.97158 * 26 25 24 28 28 N 1.34698 * 107.06984 * 359.96471 * 27 26 25 29 29 C 1.46253 * 128.84724 * 180.14381 * 28 27 26 30 30 H 1.09000 * 109.47591 * 84.85892 * 1 2 3 31 31 H 1.09002 * 109.47462 * 204.86181 * 1 2 3 32 32 H 1.09000 * 109.47327 * 324.85934 * 1 2 3 33 33 H 0.97006 * 119.99842 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46653 * 29.99672 * 11 2 1 35 35 H 1.09002 * 109.46701 * 149.99634 * 11 2 1 36 36 H 0.96696 * 114.00272 * 59.99826 * 14 12 11 37 37 H 1.08991 * 109.47281 * 300.00380 * 15 12 11 38 38 H 1.09005 * 109.46423 * 60.00448 * 15 12 11 39 39 H 1.09007 * 109.46638 * 90.00049 * 17 16 15 40 40 H 1.08994 * 109.47250 * 210.00296 * 17 16 15 41 41 H 1.08998 * 109.47257 * 330.00378 * 17 16 15 42 42 H 1.08996 * 109.50136 * 290.48264 * 22 20 18 43 43 H 1.08994 * 109.50021 * 50.55358 * 22 20 18 44 44 H 1.08996 * 109.72662 * 168.36973 * 23 22 20 45 45 H 1.08997 * 109.73099 * 288.99884 * 23 22 20 46 46 H 1.07997 * 126.46298 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.59698 * 43.10096 * 29 28 27 48 48 H 1.09001 * 109.59622 * 282.64984 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1801 1.2145 0.3220 5 6 1.5192 2.3513 -0.4138 6 7 0.3597 2.2879 -1.0336 7 14 2.3163 4.0096 -0.0912 8 1 1.4480 5.0888 -0.6267 9 1 2.4935 4.1975 1.3712 10 1 3.6407 4.0609 -0.7610 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9642 -0.9139 1.9811 14 8 1.2061 -1.9944 2.0805 15 6 3.3238 -2.9687 1.4430 16 7 3.5686 -3.3919 2.8240 17 6 2.6484 -4.3257 3.4779 18 6 4.6401 -2.9221 3.4929 19 8 5.4020 -2.1493 2.9514 20 6 4.8914 -3.3570 4.9138 21 1 4.0450 -3.0682 5.5369 22 6 6.1635 -2.6829 5.4360 23 6 6.2888 -2.9355 6.9445 24 6 6.0797 -4.4081 7.1927 25 7 6.3688 -5.0984 8.2537 26 7 6.0355 -6.3299 8.0694 27 6 5.5171 -6.4737 6.8767 28 7 5.5304 -5.2608 6.2910 29 6 5.0613 -4.8800 4.9591 30 1 -0.3634 0.0921 -1.0235 31 1 -0.3634 -0.9324 0.4321 32 1 -0.3634 0.8404 0.5915 33 1 -0.0807 3.1023 -1.3231 34 1 1.6083 -2.0281 -0.5147 35 1 3.1499 -1.1381 -0.5144 36 1 0.6956 -2.6957 1.6531 37 1 2.8122 -3.7657 0.9036 38 1 4.2746 -2.7524 0.9557 39 1 2.9802 -5.3484 3.2984 40 1 2.6345 -4.1311 4.5502 41 1 1.6458 -4.1924 3.0714 42 1 7.0317 -3.0981 4.9242 43 1 6.1097 -1.6103 5.2494 44 1 7.2817 -2.6422 7.2854 45 1 5.5320 -2.3605 7.4780 46 1 5.1480 -7.3916 6.4437 47 1 4.1040 -5.3607 4.7574 48 1 5.7924 -5.1887 4.2119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677185391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:18 Heat of formation + Delta-G solvation = 31.063454 kcal Electronic energy + Delta-G solvation = -30070.302801 eV Core-core repulsion = 25970.177352 eV Total energy + Delta-G solvation = -4100.125449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.64958 -40.61743 -37.91646 -36.98622 -35.64544 -34.66217 -33.97805 -31.89646 -31.32332 -30.00428 -29.25982 -27.26525 -26.23659 -25.72412 -24.98019 -23.58840 -22.62912 -22.10233 -20.67380 -20.37365 -19.33414 -17.71276 -17.67541 -16.94259 -16.53639 -16.33235 -16.12098 -15.59308 -15.12487 -15.04759 -14.82835 -14.76112 -14.58242 -14.47625 -13.88059 -13.69640 -13.34151 -13.15279 -12.93190 -12.67635 -12.63449 -12.30004 -11.95390 -11.91975 -11.71704 -11.56170 -11.44182 -11.15848 -10.91539 -10.73275 -10.68605 -10.64227 -10.51286 -10.38518 -10.20921 -10.02299 -9.87228 -9.82942 -9.50390 -8.78829 -8.45774 -6.73782 -5.71433 -3.16092 1.47392 1.97089 2.31970 2.56415 2.68477 3.39905 3.44752 3.46736 3.65989 3.86390 3.93087 4.00767 4.26943 4.45457 4.48941 4.53911 4.55689 4.67159 4.76850 4.84266 4.89633 5.01444 5.07903 5.11278 5.19833 5.31066 5.38765 5.43698 5.54323 5.57039 5.68644 5.70704 5.78938 5.80680 5.82561 5.95233 6.28369 6.45990 6.52030 6.66993 6.81251 7.07993 7.45819 7.71777 7.82916 7.87503 8.04223 8.38913 8.40165 9.24428 9.87287 10.34158 11.32921 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002481 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.207619 B =11282.977972 C =12171.235405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.594 5.594 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.290 1.290 9 H -0.284 1.284 10 H -0.283 1.283 11 C 0.127 3.873 12 C 0.069 3.931 13 H 0.099 0.901 14 O -0.550 6.550 15 C 0.082 3.918 16 N -0.603 5.603 17 C 0.073 3.927 18 C 0.520 3.480 19 O -0.521 6.521 20 C -0.122 4.122 21 H 0.112 0.888 22 C -0.108 4.108 23 C -0.036 4.036 24 C 0.181 3.819 25 N -0.293 5.293 26 N -0.301 5.301 27 C 0.153 3.847 28 N -0.472 5.472 29 C 0.106 3.894 30 H 0.024 0.976 31 H -0.001 1.001 32 H 0.042 0.958 33 H 0.252 0.748 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.357 0.643 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.219 0.781 47 H 0.110 0.890 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -19.078 10.432 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.316 5.316 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.211 1.211 10 H -0.209 1.209 11 C -0.002 4.002 12 C 0.006 3.994 13 H 0.117 0.883 14 O -0.353 6.353 15 C -0.041 4.041 16 N -0.336 5.336 17 C -0.070 4.070 18 C 0.306 3.694 19 O -0.396 6.396 20 C -0.144 4.144 21 H 0.130 0.870 22 C -0.146 4.146 23 C -0.075 4.075 24 C -0.087 4.087 25 N -0.133 5.133 26 N -0.140 5.140 27 C -0.135 4.135 28 N -0.164 5.164 29 C -0.017 4.017 30 H 0.042 0.958 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.202 0.798 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.236 0.764 47 H 0.128 0.872 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.207 -18.395 11.817 23.020 hybrid contribution -0.490 0.585 -1.595 1.768 sum 6.717 -17.810 10.221 21.605 Atomic orbital electron populations 1.20750 0.82163 0.95676 0.98762 1.43748 1.02025 1.00149 1.85654 1.19158 0.96571 0.85240 1.37451 0.91490 1.24958 0.97567 0.98380 0.98805 1.70085 1.17140 1.26801 1.41490 0.86324 0.78430 0.83680 0.78061 1.21617 1.21092 1.20919 1.21270 0.96930 0.89540 0.92479 1.23345 0.83353 0.94496 0.98211 0.88291 1.86658 1.32875 1.59459 1.56333 1.22412 1.02257 0.98279 0.81132 1.47755 1.25144 1.46016 1.14638 1.22003 0.94951 0.91767 0.98253 1.20032 0.81003 0.81362 0.87021 1.90774 1.46340 1.34079 1.68428 1.21665 1.02224 0.94100 0.96362 0.87025 1.21577 0.95966 1.03491 0.93572 1.20309 1.05173 0.85161 0.96879 1.24918 0.99838 0.96602 0.87337 1.74097 1.20053 0.98284 1.20818 1.74498 1.15115 1.10533 1.13890 1.26280 1.04321 0.90324 0.92525 1.46164 1.46283 1.08790 1.15129 1.22254 1.02500 0.95531 0.81411 0.95786 0.98260 0.93880 0.93754 0.94316 0.92641 0.79802 0.90390 0.88945 0.92719 0.91245 0.89731 0.90285 0.88102 0.87571 0.88300 0.76426 0.87193 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.17 8.74 59.84 0.52 4.70 16 2 N -0.59 -14.65 2.89 -181.13 -0.52 -15.17 16 3 C -0.25 -7.04 9.69 -15.06 -0.15 -7.19 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -26.67 10.51 55.49 0.58 -26.09 16 7 Si 0.91 22.22 29.57 -169.99 -5.03 17.19 16 8 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.13 2.38 5.30 -4.04 -0.02 2.36 16 12 C 0.07 1.09 3.48 -26.73 -0.09 1.00 16 13 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 14 O -0.55 -8.33 10.98 -35.23 -0.39 -8.71 16 15 C 0.08 0.94 5.10 -4.04 -0.02 0.92 16 16 N -0.60 -5.79 2.80 -181.57 -0.51 -6.29 16 17 C 0.07 0.43 8.52 59.85 0.51 0.94 16 18 C 0.52 5.68 7.06 -10.99 -0.08 5.60 16 19 O -0.52 -7.93 15.40 5.56 0.09 -7.84 16 20 C -0.12 -0.92 1.73 -91.54 -0.16 -1.08 16 21 H 0.11 0.78 7.38 -51.93 -0.38 0.40 16 22 C -0.11 -0.85 4.68 -26.42 -0.12 -0.97 16 23 C -0.04 -0.26 6.34 -27.59 -0.17 -0.44 16 24 C 0.18 1.79 7.75 -155.30 -1.20 0.58 16 25 N -0.29 -3.79 12.21 32.76 0.40 -3.39 16 26 N -0.30 -3.71 12.23 29.59 0.36 -3.35 16 27 C 0.15 1.24 12.83 -90.41 -1.16 0.08 16 28 N -0.47 -3.69 3.11 -115.53 -0.36 -4.05 16 29 C 0.11 0.59 5.81 -4.01 -0.02 0.56 16 30 H 0.02 0.63 7.42 -51.93 -0.39 0.25 16 31 H 0.00 -0.02 7.22 -51.93 -0.37 -0.40 16 32 H 0.04 1.16 7.13 -51.93 -0.37 0.79 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.36 4.00 8.79 45.56 0.40 4.41 16 37 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.09 1.18 7.42 -51.93 -0.39 0.79 16 39 H 0.05 0.18 7.18 -51.92 -0.37 -0.19 16 40 H 0.07 0.35 5.89 -51.93 -0.31 0.04 16 41 H 0.08 0.51 6.88 -51.93 -0.36 0.15 16 42 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.10 0.89 7.79 -51.93 -0.40 0.49 16 44 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.22 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.11 0.36 4.88 -51.93 -0.25 0.11 16 48 H 0.10 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -37.35 380.21 -8.43 -45.78 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.53 Total: -0.81 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -2.26 Total: 7.00 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.05 Total: -58.35 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.30 Total: -16.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.35 -8.43 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677185391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.847 kcal (2) G-P(sol) polarization free energy of solvation -37.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds